Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YGR	39260	2025-05-10	2024-02-26	3.84	2.36	3.79	2.3	0.014	1.78	3.0	0.11	12.37	0.01	2.279	1.64	0.00	3.5	96.5	0.0	-2.89	0.52	0.63	2.84	2.2	0.004	0.70	0.0	0.04	15.09	0.00	2.472	7.51	4.94	6.4	93.6	0.0	-1.80	0.76	0.64	0.75	3.36	5900	745	3	0	0	0	0	logfile
✔	8S5W	19752	2025-05-09	2024-02-26	3.05	3.14	2.97	3.1	0.012	0.84	0.0	0.04	17.30	0.00	2.313	5.50	0.24	6.5	93.5	0.0	-1.89	0.56	0.80	2.00	3.1	0.004	0.62	0.0	0.04	18.02	0.00	2.584	5.37	6.18	4.0	96.0	0.0	0.69	0.89	0.61	0.85	2.62	4009	502	3	0	1	0	0	logfile
✔	9ASo	43821	2025-05-13	2024-02-26	2.9	3.56	2.93	3.1	0.003	0.60	0.0	0.05	17.62	0.00	2.281	3.38	1.04	1.6	98.4	0.0	1.28	0.80	0.66	2.99	3.1	0.006	0.63	0.0	0.04	17.51	0.00	2.432	3.71	0.81	2.7	97.3	0.0	1.28	0.90	0.89	0.90	2.80	9426	966	6	71	4	2	0	logfile
✔	8YFX	39232	2025-05-10	2024-02-25	3.56	3.75	3.46	3.7	0.004	0.65	0.0	0.04	16.59	0.00	2.071	9.89	0.28	6.1	93.9	0.0	0.74	0.52	0.71	1.68	3.7	0.003	0.62	0.0	0.04	17.07	0.00	2.486	8.37	2.98	5.2	94.8	0.0	1.64	1.17	0.51	0.70	1.44	6588	792	2	0	0	0	0	logfile
✔	8YFU	39230	2025-05-11	2024-02-25	4.59	4.78	4.50	4.6	0.003	0.67	0.0	0.04	12.85	0.00	2.081	12.72	0.00	5.3	94.4	0.3	1.47	0.55	0.70	—	4.6	0.003	0.67	0.0	0.04	12.82	0.00	2.368	11.40	0.00	5.5	94.3	0.3	1.85	0.50	0.55	0.71	—	8419	1161	2	0	0	0	0	logfile
✔	9ASH	43814	2025-05-21	2024-02-25	2.58	2.83	2.69	2.9	0.005	0.65	0.0	0.04	16.63	0.00	1.963	10.97	0.00	6.8	93.1	0.1	-0.64	0.70	0.76	2.77	2.9	0.003	0.59	0.0	0.04	18.43	0.00	1.994	9.21	1.81	5.6	94.3	0.0	-0.27	0.35	0.71	0.82	2.26	22309	2624	14	61	5	2	0	logfile
✔	8YFW	39231	2025-05-11	2024-02-25	3.65	3.82	3.62	3.7	0.004	0.75	0.0	0.04	15.86	0.01	2.152	13.17	0.28	4.7	95.0	0.3	1.70	0.56	0.70	1.25	3.7	0.003	0.67	0.0	0.04	16.27	0.00	2.483	10.07	4.13	4.1	95.7	0.3	2.46	0.49	0.56	0.71	0.84	8419	1161	2	0	0	0	0	logfile
✔	9ASD	43813	2025-05-09	2024-02-25	3.3	3.51	3.26	3.6	0.012	1.53	4.0	0.09	11.03	0.02	2.348	2.18	1.35	4.4	95.6	0.0	0.14	0.67	0.76	4.80	3.5	0.004	0.73	0.0	0.05	13.66	0.00	2.618	5.09	1.79	3.4	96.3	0.2	0.13	1.18	0.70	0.81	3.97	3013	419	4	0	2	0	0	logfile
✔	8YFT	39229	2025-05-10	2024-02-25	3.16	4.17	3.25	3.6	0.004	0.71	2.0	0.05	13.01	0.01	2.261	4.81	0.58	4.1	95.6	0.3	-0.17	0.81	0.66	1.68	3.8	0.002	0.64	0.0	0.04	14.78	0.00	2.531	5.99	1.45	3.5	96.4	0.1	0.26	1.74	0.87	0.79	1.88	6508	783	7	0	10	0	0	logfile
✔	9AS4	43804	2025-05-11	2024-02-24	3.06	3.26	3.05	3.3	0.005	0.88	0.0	0.05	15.79	0.01	2.046	5.17	0.47	2.7	97.3	0.0	0.36	0.66	0.82	3.38	3.3	0.004	0.63	0.0	0.04	16.38	0.00	2.544	5.48	3.18	3.8	96.2	0.0	1.06	1.03	0.68	0.86	3.00	8169	1078	6	0	1	0	0	logfile
✔	9AS8	43808	2025-05-11	2024-02-24	2.54	2.73	2.54	2.7	0.005	0.83	0.0	0.05	15.96	0.01	2.198	5.44	0.71	2.3	97.7	0.0	1.16	0.63	0.77	3.54	2.8	0.004	0.69	0.0	0.05	16.66	0.00	2.437	5.81	3.76	2.7	97.3	0.0	1.27	0.97	0.62	0.80	3.44	8257	1102	6	0	1	0	0	logfile
✔	9AS7	43807	2025-05-09	2024-02-24	2.72	2.86	2.70	3.0	0.005	0.79	0.0	0.04	16.11	0.01	2.198	1.51	0.00	2.0	98.0	0.0	1.55	0.49	0.74	2.72	3.0	0.003	0.63	0.0	0.04	16.40	0.01	2.583	7.04	4.33	0.8	99.2	0.0	1.42	0.33	0.49	0.74	2.84	1987	262	2	0	1	0	0	logfile
✔	9ARY	43798	2025-05-11	2024-02-24	3.27	3.50	3.26	3.5	0.005	0.77	0.0	0.05	14.87	0.01	2.278	3.80	0.12	2.3	97.7	0.0	-0.70	0.68	0.79	2.72	3.5	0.003	0.57	0.0	0.04	16.11	0.00	2.518	6.44	2.44	2.9	97.1	0.0	0.87	1.37	0.67	0.83	2.75	8335	1107	6	0	1	0	0	logfile
✔	8YFG	39223	2025-05-29	2024-02-24	4.5	5.35	4.55	4.3	0.008	1.38	32.0	0.10	25.96	0.01	2.007	26.38	42.67	11.2	85.6	3.2	-4.11	0.53	0.35	—	4.5	0.004	0.85	0.0	0.04	14.26	0.01	2.305	20.82	0.00	7.6	91.8	0.6	-0.83	1.98	0.65	0.69	—	31599	3903	6	0	0	0	0	logfile
✔	9ASC	43812	2025-05-20	2024-02-24	2.96	3.23	2.96	3.2	0.003	0.56	0.0	0.04	11.39	0.00	2.035	1.53	0.00	2.1	97.9	0.0	2.10	0.61	0.79	2.03	3.2	0.004	0.57	0.0	0.04	15.06	0.01	1.891	1.53	1.48	2.8	97.2	0.0	0.93	0.63	0.64	0.84	1.70	20292	1272	12	4	4	0	10224	logfile
✔	9ARX	43797	2025-05-09	2024-02-24	3.24	3.48	3.22	3.5	0.006	0.86	0.0	0.05	14.13	0.01	2.302	2.50	0.00	1.2	98.8	0.0	-2.03	0.53	0.81	2.58	3.5	0.002	0.53	0.0	0.04	14.75	0.00	2.636	5.27	4.52	2.4	97.6	0.0	2.10	0.28	0.51	0.80	2.82	1851	256	2	0	1	0	0	logfile
✔	8YFE	39221	2025-05-18	2024-02-24	3.47	4.22	3.30	3.7	0.002	0.54	0.0	0.04	13.90	0.00	2.126	10.77	0.05	4.4	95.6	0.0	-0.05	0.86	0.81	1.57	3.7	0.003	0.60	0.0	0.04	15.67	0.00	2.288	8.36	1.94	4.5	95.5	0.0	0.38	0.38	0.87	0.82	1.52	17315	2107	4	0	0	0	0	logfile
✔	9AS3	43803	2025-05-09	2024-02-24	3.18	3.45	3.16	3.4	0.006	0.86	0.0	0.04	18.43	0.01	2.269	1.84	0.50	3.4	96.6	0.0	-2.31	0.53	0.83	1.31	3.4	0.003	0.63	0.0	0.04	17.83	0.01	2.602	4.46	3.52	3.0	97.0	0.0	1.46	0.36	0.50	0.81	2.21	1890	245	2	0	1	0	0	logfile
✔	8YF4	39210	2025-05-10	2024-02-24	3.41	3.59	3.32	3.6	0.003	0.55	0.0	0.04	17.00	0.00	2.064	7.25	0.86	5.2	94.8	0.0	0.92	0.56	0.73	1.36	3.6	0.003	0.58	0.0	0.04	17.23	0.00	2.507	5.97	4.57	5.8	94.2	0.0	1.54	1.59	0.55	0.74	1.72	6620	786	4	0	2	0	0	logfile
✔	8YFD	39220	2025-05-10	2024-02-24	3.57	3.79	3.57	3.8	0.003	0.68	0.0	0.04	17.76	0.00	2.195	9.97	0.57	6.1	93.5	0.4	0.20	0.56	0.77	1.34	3.8	0.003	0.64	0.0	0.04	17.91	0.00	2.521	8.37	4.69	6.3	93.4	0.3	0.92	1.18	0.56	0.77	1.13	6588	792	2	0	0	0	0	logfile

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