Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9AS7	43807	2025-05-09	2024-02-24	2.72	2.86	2.70	3.0	0.005	0.79	0.0	0.04	16.11	0.01	2.198	1.51	0.00	2.0	98.0	0.0	1.55	0.49	0.74	2.72	3.0	0.003	0.63	0.0	0.04	16.40	0.01	2.583	7.04	4.33	0.8	99.2	0.0	1.42	0.33	0.49	0.74	2.84	1987	262	2	0	1	0	0	logfile
✔	8YFE	39221	2025-05-18	2024-02-24	3.47	4.22	3.30	3.7	0.002	0.54	0.0	0.04	13.90	0.00	2.126	10.77	0.05	4.4	95.6	0.0	-0.05	0.86	0.81	1.57	3.7	0.003	0.60	0.0	0.04	15.67	0.00	2.288	8.36	1.94	4.5	95.5	0.0	0.38	0.38	0.87	0.82	1.52	17315	2107	4	0	0	0	0	logfile
✔	8YET	39203	2025-05-13	2024-02-23	4.16	4.38	4.15	4.3	0.003	0.74	0.0	0.04	17.60	0.00	2.213	8.71	0.09	5.8	94.1	0.1	1.34	0.62	0.75	—	4.3	0.003	0.66	0.0	0.04	16.31	0.00	2.394	8.81	0.00	5.3	94.5	0.2	1.02	1.62	0.63	0.75	—	10102	1206	3	0	2	0	0	logfile
✔	9ARG	43781	2025-05-21	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.112	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.003	0.66	0.0	0.04	9.96	0.00	2.559	7.20	0.00	5.6	94.4	0.0	-0.56	1.10	0.72	0.72	—	21008	3166	4	0	0	0	0	logfile
✔	9ARU	43794	2025-05-29	2024-02-23	3.9	4.46	3.98	4.2	0.006	1.06	0.0	0.06	9.89	0.01	2.181	0.81	0.09	3.1	96.9	0.0	0.83	0.81	0.75	1.24	4.3	0.003	0.72	0.0	0.04	13.83	0.00	2.353	9.39	1.50	3.7	96.3	0.1	0.32	1.84	0.83	0.79	1.08	31926	3996	30	0	63	0	0	logfile
✔	9ARH	43782	2025-05-22	2024-02-23	3.69	4.00	3.70	4.0	0.015	1.64	74.0	0.11	12.97	0.01	1.736	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.003	0.69	0.0	0.04	14.38	0.00	2.421	7.20	4.72	7.7	92.2	0.1	-0.81	1.62	0.70	0.74	1.00	22792	3182	10	0	6	0	0	logfile
✔	8YEX	39204	2025-05-10	2024-02-23	3.68	3.97	3.74	3.9	0.004	0.79	0.0	0.04	17.18	0.01	2.139	16.33	0.72	4.5	95.5	0.0	0.80	0.55	0.74	1.00	3.9	0.003	0.67	0.0	0.04	17.28	0.00	2.523	10.89	2.44	5.3	94.7	0.0	1.45	0.45	0.54	0.74	1.08	6532	784	2	0	0	0	0	logfile
✔	8S5E	19733	2025-05-19	2024-02-23	3.1	3.27	2.16	3.3	0.017	0.99	0.0	0.05	16.83	0.01	1.762	2.70	4.21	2.5	97.5	0.0	-1.35	0.64	0.86	2.35	3.2	0.003	0.55	0.0	0.04	16.02	0.00	1.750	1.46	2.77	2.2	97.8	0.0	0.71	0.65	0.63	0.86	2.49	18508	1141	21	0	14	14	9135	logfile
✔	9ARK	43785	2025-05-23	2024-02-23	4.1	3.41	3.02	3.2	0.003	0.44	0.0	0.04	11.64	0.00	2.212	8.52	3.38	4.1	95.8	0.1	-0.44	0.72	0.75	—	3.2	0.004	0.59	0.0	0.05	12.41	0.00	2.181	7.77	0.11	4.7	95.2	0.1	0.11	0.44	0.76	0.80	—	24165	2986	3	0	0	0	0	logfile
✔	9ARJ	43784	2025-05-23	2024-02-23	3.4	3.36	2.79	3.2	0.003	0.48	0.0	0.05	11.64	0.00	2.207	8.67	3.19	5.1	94.8	0.1	0.38	0.79	0.81	3.60	3.2	0.003	0.55	0.0	0.04	14.11	0.00	2.277	7.61	2.97	5.2	94.7	0.0	0.34	1.16	0.84	0.85	3.10	24188	2982	3	0	0	0	0	logfile
✔	9ARL	43786	2025-05-23	2024-02-23	4.0	3.57	3.11	3.3	0.003	0.48	1.0	0.04	11.65	0.00	2.147	10.99	3.40	3.5	96.5	0.0	0.50	0.78	0.75	—	3.3	0.003	0.57	0.0	0.04	14.20	0.00	2.402	9.92	2.69	3.0	97.0	0.0	0.53	0.85	0.79	0.75	—	24054	2983	3	0	0	0	0	logfile
✔	9ARi	43783	2025-05-21	2024-02-23	3.9	4.18	4.01	4.1	0.010	1.16	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.002	0.65	0.0	0.04	12.73	0.00	2.385	6.27	4.34	7.6	92.4	0.0	-0.55	1.22	0.69	0.70	1.01	20756	3178	6	0	0	0	0	logfile
✔	8YF1	39207	2025-05-12	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.58	0.0	0.04	16.65	0.00	2.526	9.85	2.07	2.4	97.6	0.0	1.53	0.29	0.42	0.63	0.48	9187	1156	4	0	2	0	0	logfile
✔	8S5L	19739	2025-05-25	2024-02-23	3.8	4.03	3.83	3.9	0.006	0.78	0.0	0.04	15.68	0.01	1.962	8.71	0.14	5.6	94.2	0.2	-0.18	0.81	0.80	2.00	3.9	0.005	0.60	0.0	0.04	16.09	0.00	2.246	6.60	1.71	5.7	94.3	0.0	-0.05	0.31	0.81	0.79	1.83	27289	1740	8	0	6	0	13603	logfile
✔	8YF0	39206	2025-05-12	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.67	0.0	0.04	16.76	0.00	2.615	12.10	2.16	2.3	97.7	0.0	1.16	0.42	0.54	0.65	0.81	9181	1159	2	0	0	0	0	logfile
✔	8YEZ	39205	2025-05-29	2024-02-23	3.3	3.81	3.36	3.7	0.011	1.48	6.0	0.09	23.84	0.01	1.126	12.38	25.90	8.6	90.3	1.1	-3.59	0.53	0.65	1.53	3.7	0.003	0.62	0.0	0.04	18.54	0.00	2.432	5.56	2.99	3.3	96.7	0.1	2.38	3.63	0.55	0.77	1.44	31599	3837	6	0	6	0	0	logfile
✔	9ARE	43779	2025-05-20	2024-02-23	3.72	4.00	3.77	3.9	0.007	0.98	36.0	0.07	11.57	0.01	2.124	10.72	5.24	4.8	95.1	0.1	-2.47	0.65	0.65	1.31	3.9	0.003	0.63	0.0	0.04	13.04	0.00	2.530	4.04	5.99	5.8	94.2	0.0	0.18	0.53	0.68	0.71	1.62	19222	3172	8	0	0	0	0	logfile
✔	8S50	19717	2025-05-26	2024-02-22	3.33	3.53	3.35	3.5	0.003	0.58	0.0	0.05	13.59	0.00	1.883	10.58	0.00	8.8	91.2	0.0	-1.25	0.78	0.81	3.26	3.5	0.002	0.50	0.0	0.04	14.32	0.00	2.442	8.20	0.00	8.2	91.8	0.0	-1.40	0.28	0.77	0.81	2.94	28654	1848	24	0	8	214	14016	logfile
✔	8YE9	39191	2025-05-15	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.39	0.00	2.475	4.41	1.61	4.1	95.9	0.0	-0.24	1.30	0.73	0.74	1.66	13559	1448	3	90	0	0	0	logfile
✔	8YEF	39193	2025-05-19	2024-02-22	4.3	4.72	4.48	4.4	0.005	0.90	0.0	0.06	13.94	0.01	2.234	10.30	0.10	6.0	94.0	0.0	-1.67	0.86	0.83	—	4.4	0.004	0.69	0.0	0.04	14.09	0.00	2.399	18.29	0.00	6.6	93.4	0.0	-1.45	0.46	0.86	0.84	—	18074	2307	7	0	0	0	0	logfile

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