Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YAL	39102	2025-05-17	2024-02-09	3.1	4.01	3.08	3.4	0.004	0.68	1.0	0.05	15.43	0.01	2.212	8.50	0.12	3.2	96.8	0.0	0.40	0.74	0.80	3.36	3.4	0.002	0.56	0.0	0.04	15.96	0.00	2.488	6.00	0.48	2.4	97.6	0.0	1.15	1.55	0.75	0.86	2.79	15498	1960	11	0	5	0	0	logfile
✔	8YAR	39105	2025-05-17	2024-02-09	3.6	4.58	3.78	3.9	0.004	0.69	1.0	0.04	15.79	0.01	2.232	8.64	0.06	3.0	97.0	0.0	1.04	0.73	0.82	1.32	3.9	0.002	0.63	0.0	0.04	16.19	0.00	2.478	7.69	1.09	2.9	97.1	0.0	1.02	1.58	0.74	0.84	1.19	15482	1960	11	0	5	0	0	logfile
✔	8YAG	39098	2025-05-23	2024-02-09	2.33	2.57	2.46	2.6	0.004	0.67	0.0	0.05	15.23	0.00	1.802	5.09	0.00	1.8	98.2	0.0	0.00	0.71	0.87	5.30	2.6	0.005	0.66	0.0	0.05	16.27	0.01	2.156	2.82	1.31	1.7	98.3	0.0	0.02	0.93	0.71	0.88	5.10	23960	3192	16	0	16	0	0	logfile
✔	8YAK	39101	2025-05-23	2024-02-09	2.37	2.72	2.59	2.8	0.009	0.68	0.0	0.05	17.34	0.00	2.063	6.38	0.33	2.0	98.0	0.0	0.22	0.70	0.89	4.27	2.8	0.012	0.63	0.0	0.05	16.53	0.01	2.029	2.51	2.00	2.2	97.8	0.0	0.23	0.95	0.73	0.91	4.89	24216	3192	16	0	24	0	0	logfile
✔	8YAJ	39100	2025-05-17	2024-02-09	3.2	4.14	3.27	3.6	0.006	0.70	0.0	0.05	15.60	0.00	2.209	7.97	0.00	3.6	96.4	0.0	0.53	0.75	0.83	2.69	3.6	0.002	0.56	0.0	0.04	15.60	0.00	2.476	7.02	0.85	2.6	97.4	0.0	0.95	1.13	0.75	0.86	2.52	15483	1963	11	0	5	0	0	logfile
✔	8YAH	39099	2025-05-16	2024-02-09	3.3	4.38	3.30	3.3	0.010	1.16	4.0	0.06	13.95	0.01	1.522	13.85	0.72	7.8	91.7	0.5	-0.98	0.69	0.47	0.50	3.2	0.003	0.66	0.0	0.04	13.95	0.00	2.546	8.32	1.35	3.7	96.1	0.1	0.49	0.90	0.81	0.63	0.82	14309	2274	5	0	0	0	0	logfile
✔	8YAQ	39104	2025-05-17	2024-02-09	2.3	3.41	2.42	3.0	0.003	0.46	0.0	0.04	11.19	0.00	2.267	3.21	0.18	2.7	97.3	0.1	0.83	0.85	0.91	5.03	3.0	0.003	0.51	0.0	0.04	12.29	0.00	2.519	2.45	0.47	3.2	96.7	0.1	1.16	0.19	0.85	0.91	4.61	15860	1969	7	0	13	1	0	logfile
✔	8VYM	43667	2025-05-19	2024-02-09	3.4	3.70	3.46	3.7	0.002	0.46	0.0	0.04	11.25	0.00	2.230	6.31	0.66	3.8	96.1	0.0	-0.34	0.75	0.87	2.98	3.7	0.004	0.61	0.0	0.04	13.74	0.00	2.451	7.15	1.99	4.5	95.5	0.0	0.24	1.05	0.74	0.88	2.76	18289	2218	30	0	45	0	0	logfile
✔	8YAA	39093	2025-05-10	2024-02-08	3.34	3.03	3.28	3.1	0.006	1.01	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.77	0.0	0.05	15.75	0.00	2.447	5.62	1.85	8.4	91.5	0.1	-3.88	0.94	0.78	0.86	2.61	6985	844	17	0	36	0	0	logfile
✔	8VYF	43659	2025-05-10	2024-02-08	3.2	3.37	3.21	3.4	0.011	1.29	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.004	0.62	0.0	0.05	12.31	0.00	2.565	2.54	2.12	2.7	97.3	0.0	0.64	0.53	0.67	0.87	4.98	5132	715	9	0	12	0	0	logfile
✔	8VYG	43660	2025-05-09	2024-02-08	3.1	3.18	3.21	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.003	0.66	0.0	0.04	15.22	0.00	2.602	5.29	2.39	3.4	96.6	0.0	0.45	1.45	0.54	0.77	2.58	3204	416	4	0	1	0	0	logfile
✔	8VYE	43658	2025-05-28	2024-02-08	2.7	2.90	2.87	2.9	0.009	1.32	0.0	0.08	8.86	0.01	2.018	0.76	0.00	2.5	97.5	0.0	0.78	0.73	0.78	4.26	2.9	0.005	0.69	0.0	0.05	11.75	0.00	2.407	2.12	1.75	2.2	97.8	0.0	0.96	0.48	0.73	0.80	3.92	31140	5178	24	0	57	0	0	logfile
✔	8VYJ	43662	2025-05-14	2024-02-08	3.6	4.25	3.54	4.2	0.003	0.62	0.0	0.04	20.76	0.00	2.169	8.41	0.16	7.4	92.6	0.0	-0.46	0.67	0.70	1.52	4.2	0.004	0.81	0.0	0.04	17.78	0.00	2.336	8.62	3.25	8.2	91.8	0.0	-0.85	0.80	0.66	0.75	1.81	11715	1395	6	0	23	0	0	logfile
✔	8YAB	39094	2025-05-16	2024-02-08	3.26	4.20	3.29	3.5	0.010	1.16	4.0	0.06	13.95	0.01	1.521	13.77	0.93	7.9	91.6	0.5	-0.98	0.77	0.66	1.19	3.5	0.003	0.67	0.0	0.04	14.23	0.00	2.499	8.28	2.07	4.5	95.4	0.1	0.20	0.96	0.84	0.71	1.20	14309	2274	5	0	0	0	0	logfile
✔	8YAD	39096	2025-05-18	2024-02-08	4.02	7.66	4.03	4.1	0.005	0.69	0.0	0.04	8.46	0.00	2.111	7.68	0.00	11.5	88.1	0.4	-1.33	0.74	0.54	—	4.1	0.004	0.65	0.0	0.04	7.40	0.00	2.407	2.94	0.00	7.9	91.9	0.2	0.42	2.24	0.75	0.40	—	16653	3207	2	0	0	0	0	logfile
✔	8VYK	43663	2025-05-14	2024-02-08	3.9	4.50	3.94	4.4	0.004	0.97	0.0	0.05	20.13	0.02	2.031	10.60	0.57	7.2	92.8	0.0	-0.83	0.67	0.63	0.91	4.4	0.004	0.97	0.0	0.05	17.08	0.00	2.433	10.90	1.87	7.1	92.7	0.1	-1.17	1.25	0.66	0.72	0.95	11721	1395	6	0	23	0	0	logfile
✔	8Y9M	39083	2025-05-12	2024-02-07	2.76	3.35	3.05	3.3	0.005	0.75	0.0	0.04	19.55	0.00	2.167	8.28	0.40	4.0	96.0	0.0	-1.32	0.67	0.79	3.40	3.3	0.003	0.60	0.0	0.04	20.62	0.00	2.504	6.89	2.83	2.1	97.9	0.0	-0.18	0.94	0.59	0.74	2.58	9138	853	4	107	0	0	0	logfile
✔	8VYB	43655	2025-05-11	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.66	0.0	0.04	16.85	0.00	2.557	7.33	2.37	4.3	95.7	0.0	-0.01	1.19	0.79	0.80	2.09	7249	920	2	0	0	0	0	logfile
✔	8Y9Y	39085	2025-05-13	2024-02-07	3.29	3.20	3.22	3.3	0.017	1.13	1.0	0.07	16.62	0.01	1.632	7.09	0.73	6.5	93.5	0.0	-3.25	0.77	0.83	2.48	3.2	0.003	0.63	0.0	0.04	17.52	0.00	1.185	6.07	3.00	4.0	96.0	0.0	1.36	1.20	0.72	0.82	2.26	10207	1284	5	0	3	0	0	logfile
✔	8RXK	19577	2025-05-14	2024-02-07	3.23	4.03	3.38	3.6	0.005	0.77	0.0	0.04	19.42	0.00	2.093	9.71	0.25	7.1	92.2	0.7	-0.95	0.72	0.83	2.64	3.6	0.003	0.73	0.0	0.04	19.77	0.00	2.497	7.43	2.71	6.9	92.7	0.4	0.06	0.83	0.72	0.85	2.39	12162	1446	7	48	3	0	0	logfile

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