Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YA3	39090	2025-05-09	2024-02-07	3.27	3.53	3.30	3.3	0.009	0.93	0.0	0.06	15.75	0.01	2.266	7.80	0.23	7.1	92.9	0.0	-2.67	0.61	0.83	1.74	3.3	0.003	0.62	0.0	0.04	15.65	0.00	2.637	6.60	2.49	5.0	95.0	0.0	2.73	1.19	0.61	0.84	1.75	4060	519	3	0	0	0	0	logfile
✔	8VYB	43655	2025-05-11	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.66	0.0	0.04	16.85	0.00	2.557	7.33	2.37	4.3	95.7	0.0	-0.01	1.19	0.79	0.80	2.09	7249	920	2	0	0	0	0	logfile
✔	8Y9N	39084	2025-05-12	2024-02-07	3.0	3.12	3.20	3.0	0.012	1.17	11.0	0.08	20.09	0.01	2.214	6.24	3.11	2.6	97.4	0.0	0.40	0.82	0.87	3.58	3.0	0.003	0.53	0.0	0.04	19.92	0.00	2.201	3.18	1.35	2.5	97.5	0.0	1.26	0.36	0.85	0.91	3.40	8961	851	5	99	1	0	0	logfile
✔	8Y9L	39082	2025-05-10	2024-02-07	3.0	3.22	2.95	3.2	0.006	0.90	3.0	0.07	17.89	0.01	1.953	10.21	1.52	3.8	96.1	0.1	-0.24	0.66	0.78	3.49	3.2	0.003	0.56	0.0	0.04	18.82	0.00	2.070	5.73	0.61	2.6	97.4	0.0	0.40	0.98	0.62	0.79	2.91	7008	757	3	41	1	0	0	logfile
✔	8RXS	19578	2025-05-17	2024-02-07	2.8	3.57	2.87	3.4	0.003	0.61	0.0	0.04	16.04	0.00	2.088	9.16	0.45	6.6	93.1	0.3	-1.73	0.65	0.78	3.22	3.4	0.003	0.66	0.0	0.04	16.58	0.00	2.337	4.18	1.13	7.1	92.7	0.2	-0.38	2.16	0.64	0.82	3.53	16267	1080	6	0	0	0	8245	logfile
✔	8Y9M	39083	2025-05-12	2024-02-07	2.76	3.35	3.05	3.3	0.005	0.75	0.0	0.04	19.55	0.00	2.167	8.28	0.40	4.0	96.0	0.0	-1.32	0.67	0.79	3.40	3.3	0.003	0.60	0.0	0.04	20.62	0.00	2.504	6.89	2.83	2.1	97.9	0.0	-0.18	0.94	0.59	0.74	2.58	9138	853	4	107	0	0	0	logfile
✔	8RXT	19579	2025-05-22	2024-02-07	3.93	4.22	3.85	3.9	0.008	0.92	0.0	0.04	16.93	0.01	2.188	8.29	0.62	6.3	93.0	0.7	-0.09	0.80	0.75	1.03	3.9	0.003	0.91	0.0	0.04	17.52	0.01	2.438	14.32	2.67	7.1	92.5	0.4	-0.38	1.06	0.80	0.80	1.05	22258	2891	9	0	4	0	0	logfile
✔	8Y9Z	39086	2025-05-13	2024-02-07	3.41	3.63	3.40	3.6	0.006	0.67	0.0	0.05	12.84	0.01	2.003	3.01	1.69	5.1	94.9	0.0	-1.93	0.68	0.82	2.13	3.6	0.003	0.63	0.0	0.04	15.16	0.00	1.797	5.30	1.44	5.3	94.7	0.0	0.76	2.48	0.67	0.82	1.77	11061	1388	6	0	3	0	0	logfile
✔	8Y88	39037	2025-05-29	2024-02-06	3.03	2.43	3.03	2.2	0.002	0.42	0.0	0.04	7.75	0.00	2.210	4.18	1.72	3.8	96.2	0.0	-3.28	0.75	0.76	3.28	2.1	0.004	0.77	3.0	0.05	12.45	0.00	2.427	5.20	2.79	6.1	93.9	0.0	-0.89	0.53	0.77	0.82	2.86	31257	4031	12	0	27	0	0	logfile
✔	8Y9B	39072	2025-05-15	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.47	0.0	0.04	15.73	0.00	2.131	4.04	1.19	3.0	97.0	0.1	1.24	0.38	0.75	0.86	2.68	13380	1672	3	0	1	0	0	logfile
✔	8Y8D	39042	2025-05-26	2024-02-06	3.41	3.76	3.59	3.7	0.002	0.44	0.0	0.04	8.48	0.00	2.230	4.65	1.41	3.6	96.4	0.0	-3.34	0.75	0.81	2.61	3.7	0.003	0.62	0.0	0.04	11.74	0.00	2.437	5.73	2.05	5.2	94.8	0.0	-1.01	1.01	0.76	0.86	2.65	27867	3529	8	0	31	0	0	logfile
✔	8Y9J	39081	2025-05-13	2024-02-06	4.6	4.84	4.61	4.7	0.012	2.02	19.0	0.12	16.84	0.02	2.310	2.29	2.23	7.4	90.6	2.0	-2.49	0.43	0.72	—	4.7	0.004	0.94	0.0	0.05	15.24	0.01	2.309	17.59	0.00	8.5	91.1	0.3	-1.39	1.18	0.46	0.74	—	9770	1205	5	12	0	0	0	logfile
✔	8Y86	39035	2025-05-11	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.003	0.51	0.0	0.04	15.72	0.00	2.627	2.72	1.71	2.0	98.0	0.0	2.24	0.21	0.54	0.79	2.23	8060	1028	4	0	2	0	0	logfile
✔	8Y8K	39050	2025-05-11	2024-02-06	2.89	3.09	2.85	3.2	0.003	0.54	0.0	0.04	16.02	0.01	2.248	3.63	2.28	2.5	97.5	0.0	1.68	0.61	0.80	1.21	3.2	0.003	0.49	0.0	0.04	16.56	0.01	2.614	2.78	2.85	2.4	97.6	0.0	2.06	0.26	0.57	0.79	1.24	8052	1028	2	0	0	0	0	logfile
✔	8RXC	19573	2025-05-30	2024-02-06	3.15	3.82	3.32	3.5	0.008	0.86	0.0	0.05	19.21	0.00	1.903	8.52	0.30	4.7	94.8	0.5	-1.13	0.55	0.25	2.79	3.6	0.003	0.72	0.0	0.04	19.12	0.00	1.916	8.21	2.39	4.1	95.8	0.1	0.54	1.04	0.86	0.88	2.35	19206	2376	13	42	10	0	0	logfile
✔	8VXT	43639	2025-05-16	2024-02-06	4.25	2.73	4.20	2.2	0.003	0.71	0.0	0.08	14.08	0.01	2.224	7.78	0.00	3.5	96.5	0.0	0.59	0.65	0.63	—	2.0	0.003	0.68	0.0	0.04	14.70	0.00	2.472	10.77	0.00	4.1	95.9	0.0	1.35	0.85	0.67	0.67	—	13896	1740	12	0	6	0	0	logfile
✔	8Y9E	39075	2025-05-15	2024-02-06	2.95	3.10	2.96	3.1	0.010	0.66	0.0	0.05	12.36	0.00	2.128	7.30	0.56	5.0	95.0	0.0	-3.86	0.67	0.79	4.19	3.1	0.004	0.61	0.0	0.04	15.44	0.00	2.599	8.35	2.39	2.3	97.7	0.0	-0.19	0.47	0.64	0.80	3.54	13076	1640	4	0	0	0	0	logfile
✔	8Y8Z	39064	2025-05-12	2024-02-06	3.29	3.66	3.37	3.6	0.007	0.63	0.0	0.04	11.55	0.00	1.761	8.07	6.41	2.6	97.4	0.0	-2.01	0.49	0.64	2.05	3.6	0.003	0.65	0.0	0.04	14.68	0.00	2.316	10.51	3.05	3.0	97.0	0.0	0.70	0.82	0.59	0.77	2.28	9082	1130	6	0	6	4	0	logfile
✔	8Y87	39036	2025-05-27	2024-02-06	3.26	2.50	3.33	2.2	0.002	0.43	0.0	0.04	7.82	0.00	2.244	4.09	1.77	3.2	96.8	0.0	-2.35	0.75	0.75	3.02	2.2	0.005	0.68	0.0	0.05	12.73	0.00	2.448	5.70	2.93	5.3	94.7	0.0	-0.90	1.01	0.77	0.82	2.96	29531	3778	10	0	29	0	0	logfile
✔	8Y8E	39043	2025-05-25	2024-02-06	3.62	2.58	3.68	1.8	0.002	0.43	0.0	0.04	8.47	0.00	2.211	6.06	2.45	5.7	94.3	0.0	-3.40	0.67	0.60	1.08	1.7	0.003	0.67	0.0	0.04	12.40	0.00	2.478	8.69	2.70	9.6	90.4	0.0	-2.23	1.01	0.69	0.63	0.93	26640	3538	6	0	16	0	0	logfile

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