Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y9C	39073	2025-05-15	2024-02-06	3.0	3.24	3.07	3.2	0.003	0.49	0.0	0.04	14.35	0.00	2.211	7.37	0.46	3.7	96.3	0.0	1.00	0.71	0.78	2.73	3.2	0.003	0.58	0.0	0.04	16.27	0.00	2.234	5.68	1.38	3.0	97.0	0.0	1.14	0.65	0.72	0.82	2.67	13400	1674	3	0	1	0	0	logfile
✔	8Y8H	39046	2025-05-26	2024-02-06	3.65	2.56	3.74	1.8	0.002	0.43	0.0	0.04	7.61	0.00	2.225	5.50	1.54	4.1	95.9	0.0	-3.71	0.66	0.59	1.29	1.8	0.003	0.65	0.0	0.04	12.05	0.00	2.461	7.62	2.32	5.8	94.2	0.0	-1.73	1.03	0.65	0.57	1.07	27359	3545	6	0	11	0	0	logfile
✔	8Y8i	39047	2025-05-26	2024-02-06	3.58	2.86	3.64	2.0	0.002	0.40	0.0	0.04	7.75	0.00	2.216	6.32	3.10	3.5	96.5	0.0	-2.74	0.63	0.54	0.63	1.8	0.006	0.80	0.0	0.05	12.43	0.01	2.420	14.76	2.78	8.2	91.8	0.0	-1.84	0.76	0.66	0.62	0.64	27728	3567	6	0	6	0	0	logfile
✔	8Y9E	39075	2025-05-15	2024-02-06	2.95	3.10	2.96	3.1	0.010	0.66	0.0	0.05	12.36	0.00	2.128	7.30	0.56	5.0	95.0	0.0	-3.86	0.67	0.79	4.19	3.1	0.004	0.61	0.0	0.04	15.44	0.00	2.599	8.35	2.39	2.3	97.7	0.0	-0.19	0.47	0.64	0.80	3.54	13076	1640	4	0	0	0	0	logfile
✔	8Y8G	39045	2025-05-26	2024-02-06	3.23	3.55	3.37	3.5	0.002	0.43	0.0	0.04	8.08	0.00	2.236	4.64	1.19	3.4	96.6	0.0	-3.23	0.75	0.83	3.07	3.5	0.003	0.63	0.0	0.04	11.97	0.00	2.421	4.57	1.99	5.7	94.3	0.0	-1.15	0.71	0.78	0.89	3.11	27828	3527	11	0	31	0	0	logfile
✔	8Y8C	39041	2025-05-26	2024-02-06	2.95	3.16	2.99	3.1	0.002	0.40	0.0	0.04	6.86	0.00	2.219	3.81	0.80	2.2	97.8	0.0	-1.59	0.75	0.84	3.94	3.1	0.003	0.60	0.0	0.04	13.02	0.00	2.397	3.33	2.12	3.7	96.3	0.0	-0.35	0.56	0.78	0.90	4.05	27789	3548	6	0	25	0	0	logfile
✔	8Y8A	39039	2025-05-30	2024-02-06	3.19	2.47	3.23	2.2	0.002	0.43	0.0	0.04	7.89	0.00	2.209	3.84	1.45	3.5	96.5	0.0	-2.29	0.73	0.73	2.75	2.1	0.004	0.73	1.0	0.05	12.07	0.00	2.186	5.63	2.50	4.8	95.2	0.0	-0.81	0.99	0.76	0.80	2.72	33387	4284	22	0	38	0	0	logfile
✔	8Y86	39035	2025-05-11	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.003	0.51	0.0	0.04	15.72	0.00	2.627	2.72	1.71	2.0	98.0	0.0	2.24	0.21	0.54	0.79	2.23	8060	1028	4	0	2	0	0	logfile
✔	8Y9B	39072	2025-05-15	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.47	0.0	0.04	15.73	0.00	2.131	4.04	1.19	3.0	97.0	0.1	1.24	0.38	0.75	0.86	2.68	13380	1672	3	0	1	0	0	logfile
✔	8Y9J	39081	2025-05-13	2024-02-06	4.6	4.84	4.61	4.7	0.012	2.02	19.0	0.12	16.84	0.02	2.310	2.29	2.23	7.4	90.6	2.0	-2.49	0.43	0.72	—	4.7	0.004	0.94	0.0	0.05	15.24	0.01	2.309	17.59	0.00	8.5	91.1	0.3	-1.39	1.18	0.46	0.74	—	9770	1205	5	12	0	0	0	logfile
✔	8Y8S	39057	2025-05-11	2024-02-06	3.03	3.17	2.93	3.2	0.002	0.42	0.0	0.04	16.23	0.00	2.265	4.62	2.85	3.8	96.2	0.0	-0.75	0.71	0.86	3.15	3.2	0.004	0.55	0.0	0.04	16.07	0.00	2.466	3.82	4.28	4.9	95.1	0.0	1.25	0.26	0.70	0.86	2.85	7577	1011	4	0	0	0	0	logfile
✔	8Y8K	39050	2025-05-11	2024-02-06	2.89	3.09	2.85	3.2	0.003	0.54	0.0	0.04	16.02	0.01	2.248	3.63	2.28	2.5	97.5	0.0	1.68	0.61	0.80	1.21	3.2	0.003	0.49	0.0	0.04	16.56	0.01	2.614	2.78	2.85	2.4	97.6	0.0	2.06	0.26	0.57	0.79	1.24	8052	1028	2	0	0	0	0	logfile
✔	8Y8E	39043	2025-05-25	2024-02-06	3.62	2.58	3.68	1.8	0.002	0.43	0.0	0.04	8.47	0.00	2.211	6.06	2.45	5.7	94.3	0.0	-3.40	0.67	0.60	1.08	1.7	0.003	0.67	0.0	0.04	12.40	0.00	2.478	8.69	2.70	9.6	90.4	0.0	-2.23	1.01	0.69	0.63	0.93	26640	3538	6	0	16	0	0	logfile
✔	8Y8F	39044	2025-05-26	2024-02-06	3.07	2.37	3.12	2.2	0.002	0.43	0.0	0.04	8.09	0.00	2.203	3.54	1.35	3.1	96.9	0.0	-2.12	0.79	0.79	3.87	2.1	0.004	0.82	2.0	0.04	12.92	0.00	2.155	5.31	2.02	4.3	95.7	0.0	-0.51	0.53	0.81	0.84	3.73	28027	3550	10	0	41	0	0	logfile
✔	8Y88	39037	2025-05-29	2024-02-06	3.03	2.43	3.03	2.2	0.002	0.42	0.0	0.04	7.75	0.00	2.210	4.18	1.72	3.8	96.2	0.0	-3.28	0.75	0.76	3.28	2.1	0.004	0.77	3.0	0.05	12.45	0.00	2.427	5.20	2.79	6.1	93.9	0.0	-0.89	0.53	0.77	0.82	2.86	31257	4031	12	0	27	0	0	logfile
✔	8Y8D	39042	2025-05-26	2024-02-06	3.41	3.76	3.59	3.7	0.002	0.44	0.0	0.04	8.48	0.00	2.230	4.65	1.41	3.6	96.4	0.0	-3.34	0.75	0.81	2.61	3.7	0.003	0.62	0.0	0.04	11.74	0.00	2.437	5.73	2.05	5.2	94.8	0.0	-1.01	1.01	0.76	0.86	2.65	27867	3529	8	0	31	0	0	logfile
✔	8RXC	19573	2025-05-30	2024-02-06	3.15	3.82	3.32	3.5	0.008	0.86	0.0	0.05	19.21	0.00	1.903	8.52	0.30	4.7	94.8	0.5	-1.13	0.55	0.25	2.79	3.6	0.003	0.72	0.0	0.04	19.12	0.00	1.916	8.21	2.39	4.1	95.8	0.1	0.54	1.04	0.86	0.88	2.35	19206	2376	13	42	10	0	0	logfile
✔	8VXT	43639	2025-05-16	2024-02-06	4.25	2.73	4.20	2.2	0.003	0.71	0.0	0.08	14.08	0.01	2.224	7.78	0.00	3.5	96.5	0.0	0.59	0.65	0.63	—	2.0	0.003	0.68	0.0	0.04	14.70	0.00	2.472	10.77	0.00	4.1	95.9	0.0	1.35	0.85	0.67	0.67	—	13896	1740	12	0	6	0	0	logfile
✔	8Y81	39029	2025-05-12	2024-02-05	2.89	3.13	2.95	3.2	0.007	1.01	0.0	0.06	16.04	0.01	2.274	5.39	0.10	3.8	96.1	0.1	-1.30	0.64	0.78	2.56	3.2	0.004	0.61	0.0	0.04	16.12	0.00	2.469	8.08	1.82	4.1	95.9	0.0	0.60	1.13	0.57	0.77	2.34	8915	1077	13	0	14	0	0	logfile
✔	8Y84	39032	2025-05-09	2024-02-05	2.98	3.18	2.95	3.2	0.007	1.15	0.0	0.06	15.18	0.01	2.269	4.95	0.00	1.5	98.5	0.0	-1.59	0.43	0.76	2.26	3.2	0.004	0.69	0.0	0.04	16.72	0.00	2.591	6.29	0.42	1.9	98.1	0.0	2.08	0.31	0.42	0.78	1.47	2168	268	5	0	1	0	0	logfile

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