Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y7Z	39027	2025-05-10	2024-02-05	2.57	2.82	2.61	2.9	0.004	0.66	0.0	0.04	20.76	0.00	1.958	14.35	0.33	3.7	96.3	0.0	-0.35	0.69	0.79	3.13	2.9	0.005	0.65	0.0	0.04	21.11	0.01	1.928	11.56	3.95	3.7	96.3	0.0	-0.22	0.24	0.65	0.80	3.25	6488	708	5	41	1	0	0	logfile
✔	8Y81	39029	2025-05-12	2024-02-05	2.89	3.13	2.95	3.2	0.007	1.01	0.0	0.06	16.04	0.01	2.274	5.39	0.10	3.8	96.1	0.1	-1.30	0.64	0.78	2.56	3.2	0.004	0.61	0.0	0.04	16.12	0.00	2.469	8.08	1.82	4.1	95.9	0.0	0.60	1.13	0.57	0.77	2.34	8915	1077	13	0	14	0	0	logfile
✔	8Y85	39034	2025-05-11	2024-02-05	2.73	2.89	2.73	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.003	0.57	0.0	0.04	16.88	0.01	2.615	2.35	1.94	2.5	97.5	0.0	2.43	0.23	0.59	0.78	1.83	8116	1028	4	0	4	0	0	logfile
✔	8RWY	19568	2025-05-16	2024-02-05	3.02	3.74	3.11	3.5	0.003	0.49	0.0	0.04	13.42	0.00	2.218	5.36	0.07	2.2	97.6	0.1	1.41	0.88	0.90	3.43	3.5	0.005	0.55	0.0	0.04	14.16	0.00	2.600	3.23	0.49	2.4	97.6	0.1	1.12	0.24	0.88	0.92	3.09	14109	1837	12	0	6	0	0	logfile
✔	8RWK	19549	2025-05-17	2024-02-05	3.8	3.22	3.88	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.2	0.003	0.64	0.0	0.04	16.19	0.00	2.392	5.96	2.08	2.6	97.4	0.0	0.25	2.40	0.74	0.77	2.52	15416	1980	8	0	4	0	0	logfile
✔	8VXQ	43629	2025-05-29	2024-02-05	3.1	3.71	3.15	3.6	0.004	0.71	1.0	0.03	18.79	0.01	2.202	3.22	0.37	6.7	93.2	0.0	1.68	0.65	0.78	1.03	3.6	0.003	0.71	1.0	0.04	19.07	0.00	2.108	5.92	2.82	6.1	93.7	0.2	2.26	0.42	0.63	0.78	1.06	31572	4158	18	0	0	0	0	logfile
✔	8Y7E	39013	2025-05-25	2024-02-04	4.66	8.34	16.54	40.0	0.023	1.40	0.0	0.09	15.11	0.01	2.073	10.06	3.83	3.1	96.9	0.0	-1.68	0.32	0.10	—	40.0	0.002	0.61	0.0	0.04	13.92	0.00	2.456	10.31	0.00	2.2	97.8	0.0	0.57	2.08	0.41	0.29	—	26949	3426	19	80	4	0	0	logfile
✔	8VXC	43616	2025-05-12	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.004	0.65	0.0	0.04	17.44	0.01	2.542	10.81	1.90	4.0	96.0	0.0	0.23	0.60	0.75	0.73	1.77	9390	1139	3	22	0	0	0	logfile
✔	8Y7M	39020	2025-05-26	2024-02-04	3.0	2.23	2.74	2.0	0.003	0.64	1.0	0.04	13.68	0.00	2.225	5.62	0.22	6.0	93.8	0.1	-0.65	0.76	0.76	2.09	2.0	0.004	0.70	0.0	0.04	17.90	0.00	2.486	5.14	3.85	6.3	93.5	0.2	-0.23	0.99	0.80	0.84	2.63	25006	3117	8	0	0	0	0	logfile
✔	8VXH	43617	2025-05-20	2024-02-04	2.79	3.06	2.80	3.0	0.002	0.46	0.0	0.04	9.66	0.00	2.365	1.02	0.00	1.3	98.7	0.0	3.14	0.65	0.81	2.76	3.0	0.003	0.53	0.0	0.04	14.89	0.00	2.394	2.39	1.34	3.1	96.9	0.0	1.81	1.61	0.63	0.80	2.22	19668	1248	4	0	0	0	9956	logfile
✔	8VX9	43613	2025-05-14	2024-02-03	2.65	2.17	2.70	1.9	0.004	0.62	0.0	0.04	13.77	0.00	2.221	11.85	0.08	4.1	95.9	0.0	-0.43	0.74	0.70	2.71	1.5	0.004	0.68	0.0	0.04	16.65	0.01	2.454	11.98	1.42	3.9	96.1	0.0	0.00	3.19	0.73	0.70	2.09	11244	1433	2	0	0	0	0	logfile
✔	8VXA	43615	2025-05-12	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.003	0.63	0.0	0.04	18.17	0.00	2.477	10.45	3.16	2.7	97.3	0.0	0.91	0.58	0.77	0.77	2.38	9431	1139	3	24	0	0	0	logfile
✔	8Y6P	38994	2025-05-13	2024-02-03	3.9	4.26	4.00	4.1	0.004	0.90	0.0	0.05	16.87	0.01	2.064	19.68	1.34	7.1	91.8	1.1	-0.98	0.81	0.77	1.08	4.1	0.003	0.80	0.0	0.05	17.21	0.00	2.382	12.85	3.49	7.7	91.6	0.7	-0.94	2.44	0.82	0.79	1.10	9977	1228	1	0	0	0	0	logfile
✔	8Y6L	38990	2025-05-10	2024-02-02	3.4	3.59	3.33	3.6	0.006	1.02	8.0	0.06	17.31	0.01	1.397	18.84	3.53	10.0	88.5	1.5	-1.61	0.58	0.74	2.10	3.6	0.003	0.80	0.0	0.04	17.76	0.00	2.394	12.87	5.88	8.5	91.3	0.2	-0.24	1.17	0.57	0.74	1.36	6256	818	2	0	0	0	0	logfile
✔	8RW5	19543	2025-05-10	2024-02-02	2.94	3.11	2.94	3.1	0.003	0.54	0.0	0.04	15.69	0.00	2.179	5.79	0.29	2.5	97.5	0.0	0.66	0.67	0.85	3.33	3.1	0.004	0.58	0.0	0.04	16.52	0.00	2.535	5.27	2.19	2.7	97.3	0.0	0.91	0.68	0.68	0.85	3.17	6753	872	1	0	0	0	0	logfile
✔	8Y6A	38983	2025-05-13	2024-02-02	2.72	3.72	2.80	3.2	0.004	0.81	0.0	0.06	15.69	0.01	2.212	14.67	0.48	6.5	93.0	0.5	-1.89	0.79	0.64	1.10	3.3	0.004	0.92	0.0	0.05	15.95	0.01	2.095	14.46	1.90	7.4	92.5	0.1	-1.47	0.94	0.80	0.66	1.10	9786	1206	10	0	16	0	0	logfile
✔	8Y6M	38991	2025-05-10	2024-02-02	2.91	3.15	2.94	3.2	0.006	0.70	0.0	0.05	18.43	0.01	2.065	13.26	7.32	3.3	96.7	0.0	0.60	0.50	0.70	2.60	3.2	0.003	0.63	0.0	0.04	18.16	0.00	2.598	13.11	2.90	2.6	97.4	0.0	1.33	1.07	0.51	0.70	1.91	6502	826	2	0	0	0	0	logfile
✔	8VWY	43605	2025-05-10	2024-02-02	2.78	2.94	2.85	3.1	0.006	0.58	0.0	0.04	12.58	0.00	2.133	11.76	6.10	5.2	94.8	0.0	-1.38	0.63	0.78	3.81	3.1	0.004	0.62	0.0	0.04	15.73	0.00	2.274	9.84	2.82	5.5	94.5	0.0	-0.93	0.50	0.62	0.80	2.39	6293	825	13	0	7	8	0	logfile
✔	8Y69	38982	2025-05-19	2024-02-02	3.38	4.15	3.51	3.8	0.003	0.66	0.0	0.04	9.88	0.00	2.194	8.52	3.56	5.4	94.5	0.1	-2.16	0.73	0.80	2.04	3.8	0.004	0.89	1.0	0.04	13.29	0.00	2.410	10.29	3.61	7.2	92.7	0.1	-1.48	1.31	0.71	0.78	1.72	17577	2255	10	0	2	0	0	logfile
✔	8VWP	43593	2025-05-16	2024-02-02	3.21	3.46	3.22	3.5	0.012	1.51	4.0	0.09	10.39	0.01	2.359	1.40	0.00	2.2	97.6	0.2	0.79	0.77	0.84	4.06	3.5	0.002	0.55	0.0	0.04	13.38	0.00	2.625	2.34	1.29	1.8	98.2	0.0	0.75	0.49	0.75	0.88	3.73	14820	2012	8	0	4	0	0	logfile

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