Table showing results for May 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VWP	43593	2025-05-16	2024-02-02	3.21	3.46	3.22	3.5	0.012	1.51	4.0	0.09	10.39	0.01	2.359	1.40	0.00	2.2	97.6	0.2	0.79	0.77	0.84	4.06	3.5	0.002	0.55	0.0	0.04	13.38	0.00	2.625	2.34	1.29	1.8	98.2	0.0	0.75	0.49	0.75	0.88	3.73	14820	2012	8	0	4	0	0	logfile
✔	8VWW	43604	2025-05-17	2024-02-02	3.9	4.09	3.82	4.1	0.003	0.64	0.0	0.04	13.70	0.01	2.056	4.35	2.05	4.5	95.4	0.1	-0.82	0.67	0.73	2.95	4.1	0.004	0.67	0.0	0.04	15.42	0.00	2.382	9.79	1.92	5.3	94.7	0.0	-0.34	1.33	0.73	0.78	1.98	13801	899	5	0	0	0	6855	logfile
✔	8Y5Z	38960	2025-05-11	2024-02-01	3.35	3.68	3.40	3.7	0.003	0.61	0.0	0.04	13.09	0.01	2.201	8.65	0.00	4.7	95.3	0.0	1.63	0.65	0.84	2.63	3.7	0.002	0.57	0.0	0.04	15.38	0.01	2.282	6.66	1.62	4.8	95.2	0.0	1.85	0.92	0.65	0.85	1.98	7918	1016	4	0	4	0	0	logfile
✔	8VWH	43586	2025-05-19	2024-02-01	3.06	3.44	3.05	3.4	0.002	0.46	0.0	0.04	16.10	0.00	2.115	10.64	0.10	4.5	95.5	0.0	-0.56	0.53	0.73	2.23	3.4	0.004	0.78	1.0	0.05	16.92	0.00	2.196	11.12	3.62	5.2	94.8	0.0	-0.45	1.40	0.53	0.74	1.83	18889	2329	15	0	7	0	0	logfile
✔	8RVN	19525	2025-05-14	2024-02-01	3.5	3.62	3.48	3.5	0.004	0.80	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.003	0.59	0.0	0.05	15.05	0.00	2.427	3.72	1.94	4.2	95.8	0.0	-0.14	1.16	0.78	0.85	2.00	11924	1540	8	0	12	0	0	logfile
✔	8Y66	38968	2025-05-09	2024-02-01	3.28	3.92	3.36	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.62	0.0	0.04	16.22	0.00	2.507	7.51	4.17	2.4	97.6	0.0	1.82	0.35	0.47	0.70	1.02	3606	467	2	0	1	0	0	logfile
✔	8Y65	38966	2025-05-09	2024-02-01	3.51	3.77	3.40	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.002	0.57	0.0	0.04	15.35	0.00	2.602	9.30	2.13	3.4	96.6	0.0	1.85	0.36	0.45	0.57	0.74	3565	467	2	0	1	0	0	logfile
✔	8Y5Y	38959	2025-05-11	2024-02-01	3.3	3.56	3.32	3.6	0.004	0.68	0.0	0.05	13.07	0.01	2.298	9.39	0.46	4.2	95.2	0.6	-0.04	0.65	0.81	3.00	3.6	0.003	0.75	0.0	0.05	15.17	0.01	2.598	11.32	3.59	4.0	95.6	0.4	0.38	0.49	0.64	0.84	1.80	7918	1012	4	0	2	0	0	logfile
✔	8Y5U	38953	2025-05-11	2024-02-01	3.04	3.34	3.12	3.4	0.004	0.62	0.0	0.04	13.06	0.01	2.215	8.29	0.12	3.7	96.2	0.1	1.88	0.68	0.85	2.62	3.4	0.003	0.60	0.0	0.04	15.04	0.01	2.325	7.55	1.84	3.1	96.8	0.1	2.02	0.36	0.60	0.85	2.53	7961	1016	4	0	5	0	0	logfile
✔	8Y62	38964	2025-05-11	2024-02-01	3.2	2.90	3.23	3.3	0.006	0.73	0.0	0.05	13.81	0.00	2.202	9.41	0.13	5.0	95.0	0.0	-1.49	0.79	0.84	3.17	3.4	0.003	0.66	0.0	0.04	15.34	0.00	2.508	6.74	3.26	3.0	97.0	0.0	0.13	0.39	0.80	0.85	2.10	8160	1128	6	0	1	0	0	logfile
✔	8Y5W	38954	2025-05-11	2024-02-01	2.73	2.95	2.75	3.0	0.003	0.64	0.0	0.04	11.21	0.00	2.168	6.39	0.00	4.8	95.2	0.0	0.63	0.71	0.87	3.73	3.0	0.003	0.62	0.0	0.04	13.96	0.01	2.207	7.25	1.60	4.9	95.0	0.1	1.33	0.91	0.66	0.89	3.30	8015	1023	4	0	6	0	0	logfile
✔	8Y5X	38955	2025-05-11	2024-02-01	3.25	3.48	3.25	3.5	0.003	0.64	0.0	0.04	12.54	0.01	2.201	8.63	0.00	3.4	96.4	0.2	1.40	0.64	0.83	2.94	3.4	0.004	0.64	0.0	0.04	14.19	0.01	2.189	9.30	1.82	3.9	96.1	0.0	1.91	0.38	0.65	0.85	2.40	8032	1024	4	0	4	0	0	logfile
✔	8VVF	43557	2025-05-12	2024-01-31	3.0	2.62	—	3.1	0.003	0.67	0.0	0.05	12.63	0.00	2.229	5.99	0.00	4.7	95.3	0.0	-1.37	0.77	0.75	1.34	3.1	0.004	0.69	0.0	0.04	15.76	0.00	2.321	11.86	2.67	5.1	94.9	0.0	-0.17	0.56	0.78	0.77	1.76	8581	1135	6	0	1	0	0	logfile
✔	8VVY	43572	2025-05-16	2024-01-31	3.49	3.69	3.51	3.6	0.003	0.61	0.0	0.04	14.71	0.00	2.243	8.96	0.18	4.8	95.2	0.1	0.80	0.71	0.78	1.16	3.7	0.004	0.64	0.0	0.04	16.25	0.00	2.564	6.95	1.58	4.4	95.6	0.0	1.43	0.36	0.71	0.80	0.95	14950	1901	2	0	0	0	0	logfile
✔	8RUQ	19514	2025-05-21	2024-01-31	2.29	3.29	2.31	2.8	0.004	0.57	0.0	0.04	28.43	0.00	2.076	2.34	0.64	1.7	98.3	0.0	2.96	0.91	0.88	3.99	2.8	0.005	0.59	0.0	0.04	28.27	0.00	2.431	2.06	1.11	2.1	97.9	0.0	2.98	0.17	0.89	0.89	4.10	21818	784	11	294	0	0	9671	logfile
✔	8RUP	19513	2025-05-25	2024-01-31	2.42	2.13	—	1.6	0.006	0.69	0.0	0.04	27.44	0.01	2.215	5.85	0.73	2.0	98.0	0.0	1.21	0.76	0.71	2.15	1.6	0.004	0.63	0.0	0.04	27.28	0.01	2.277	5.02	3.06	3.1	96.9	0.0	2.19	1.04	0.76	0.73	2.23	25466	1021	14	294	1	0	11444	logfile
✔	8Y51	38927	2025-05-12	2024-01-31	3.3	4.02	3.23	3.7	0.002	0.43	0.0	0.04	8.23	0.00	2.053	5.64	0.21	0.8	99.1	0.1	-0.93	0.69	0.74	1.74	3.6	0.004	0.75	0.0	0.04	14.27	0.00	2.489	9.75	2.77	2.3	97.7	0.0	1.12	2.10	0.70	0.83	1.81	8883	1130	5	0	0	0	0	logfile
✔	8VVN	43563	2025-05-15	2024-01-31	2.2	2.40	—	2.4	0.004	0.60	0.0	0.04	13.90	0.00	2.098	10.00	0.00	3.1	96.9	0.1	0.25	0.66	0.82	3.74	2.4	0.003	0.53	0.0	0.04	16.39	0.00	2.219	5.99	0.72	2.5	97.4	0.1	1.65	0.33	0.66	0.84	3.12	12935	1610	16	0	2	140	0	logfile
✔	8VVi	43560	2025-05-11	2024-01-31	2.8	3.04	2.78	3.1	0.002	0.44	0.0	0.04	13.85	0.00	2.197	7.21	0.00	3.9	96.1	0.0	-0.11	0.63	0.80	3.25	3.1	0.004	0.59	0.0	0.04	16.83	0.00	2.429	7.15	1.65	4.1	95.9	0.0	1.26	1.69	0.67	0.84	3.02	7762	968	7	0	0	0	0	logfile
✔	8VVH	43559	2025-05-11	2024-01-31	3.95	4.19	3.93	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.66	0.0	0.04	17.00	0.00	2.522	6.33	6.31	7.7	92.2	0.1	-1.35	0.30	0.69	0.80	1.55	6877	941	4	0	0	0	0	logfile

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