Table showing results for June 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZPP	14860	2022-06-06	2022-04-28	4.5	3.20	4.54	4.6	0.003	0.64	0.0	0.04	15.26	0.00	2.166	11.92	0.00	3.8	96.1	0.1	0.57	0.62	0.53	—	4.4	0.004	0.82	0.0	0.05	15.79	0.01	2.038	18.37	0.00	4.9	95.0	0.1	-0.59	1.74	0.67	0.66	—	33171	3903	20	80	0	0	0	logfile
✔	7XJH	33227	2022-06-02	2022-04-18	3.3	2.96	3.18	3.2	0.003	0.58	0.0	0.04	14.01	0.00	2.218	7.48	0.00	3.1	96.9	0.0	0.45	0.60	0.78	2.05	3.2	0.007	0.66	0.0	0.04	15.48	0.00	2.095	7.35	0.49	2.8	97.2	0.0	0.86	0.38	0.66	0.81	2.18	7832	1027	5	0	1	0	0	logfile
✔	7UPi	26667	2022-06-02	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.62	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.004	0.58	0.0	0.04	11.05	0.00	1.939	4.35	0.11	2.6	97.4	0.0	-0.29	2.21	0.91	0.90	4.11	7775	972	5	0	5	0	0	logfile
✔	7UML	26603	2022-06-03	2022-04-07	3.5	3.77	3.85	3.7	0.003	0.58	0.0	0.04	15.49	0.00	2.114	7.79	0.00	2.0	97.4	0.6	-2.75	0.66	0.69	2.52	3.7	0.009	1.12	0.0	0.04	17.55	0.01	1.978	11.79	0.58	10.4	89.1	0.5	-1.95	0.78	0.65	0.72	2.42	13227	812	7	13	0	0	6477	logfile
✔	7ZGU	14713	2022-06-06	2022-04-04	3.4	2.24	3.39	2.1	0.003	0.68	0.0	0.04	14.94	0.00	2.201	11.86	0.55	6.2	93.8	0.0	-0.91	0.69	0.68	1.58	1.6	0.004	0.81	0.0	0.04	17.57	0.01	2.082	14.38	0.80	7.2	92.8	0.0	-1.15	0.99	0.71	0.73	1.70	38940	4854	12	0	6	0	0	logfile
✔	7ZDQ	14666	2022-06-02	2022-03-29	3.2	2.77	3.10	2.9	0.002	0.54	0.0	0.04	15.18	0.00	2.212	6.55	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.0	0.004	0.55	0.0	0.04	16.22	0.01	2.195	6.96	0.60	2.8	97.2	0.0	1.31	0.26	0.73	0.84	3.03	6264	763	3	0	3	0	0	logfile
✔	7UHG	26514	2022-06-04	2022-03-26	3.0	3.13	—	3.1	0.003	0.56	0.0	0.05	14.80	0.00	2.167	7.51	0.09	4.4	95.5	0.1	-1.09	0.60	0.83	2.76	3.1	0.003	0.55	0.0	0.04	17.00	0.00	2.197	8.10	1.54	4.4	95.5	0.1	-0.07	0.40	0.59	0.84	2.43	20414	2502	11	0	23	0	0	logfile
✔	7XD0	33131	2022-06-03	2022-03-26	3.48	2.99	—	2.9	0.003	0.57	0.0	0.04	27.19	0.00	2.132	10.17	0.13	2.9	97.1	0.0	1.23	0.82	0.81	1.82	2.9	0.006	0.68	0.0	0.04	28.43	0.00	2.154	11.37	0.65	4.5	95.5	0.0	1.36	0.30	0.83	0.83	1.44	13222	915	12	292	0	0	0	logfile
✔	7XD1	33132	2022-06-02	2022-03-26	3.2	2.74	3.19	3.1	0.009	0.87	0.0	0.05	26.97	0.01	2.339	2.86	1.59	1.3	98.7	0.0	-5.83	0.76	0.83	4.00	3.1	0.004	0.61	0.0	0.04	28.48	0.00	2.032	6.87	0.48	2.3	97.7	0.0	1.55	0.48	0.78	0.84	2.74	12048	760	10	294	0	0	0	logfile
✔	7UHF	26513	2022-06-04	2022-03-26	3.1	3.21	—	3.2	0.004	0.69	0.0	0.05	15.94	0.00	2.053	10.13	2.31	5.5	94.4	0.1	-1.07	0.55	0.79	2.79	3.2	0.005	0.67	0.0	0.04	16.71	0.00	2.169	7.98	0.41	5.1	94.9	0.0	-0.71	0.41	0.55	0.82	2.63	20379	2502	10	0	21	0	0	logfile
✔	7XCR	33126	2022-06-04	2022-03-25	2.57	2.86	—	2.8	0.007	0.96	0.0	0.05	23.88	0.01	2.228	4.19	0.90	4.3	95.6	0.2	-4.82	0.76	0.83	4.14	2.8	0.005	0.69	0.0	0.04	26.33	0.00	2.108	8.73	2.50	3.9	95.9	0.2	0.80	0.50	0.74	0.83	3.42	15400	1174	13	292	1	0	0	logfile
✔	7UG7	26486	2022-06-16	2022-03-24	2.58	3.04	2.86	2.8	0.009	1.12	10.0	0.09	15.04	0.02	1.456	3.74	2.15	3.2	96.7	0.1	0.05	0.84	0.88	2.79	2.9	0.003	0.64	4.0	0.03	14.68	0.01	1.889	10.71	2.66	2.6	97.4	0.0	0.26	0.54	0.84	0.89	2.91	154353	6785	70	4701	420	0	0	logfile
✔	7XC6	33113	2022-06-03	2022-03-23	2.79	2.93	2.78	3.0	0.006	0.72	0.0	0.05	17.67	0.00	2.003	7.23	7.75	7.1	92.9	0.0	-2.40	0.63	0.67	0.82	2.9	0.005	0.79	0.0	0.04	18.24	0.00	2.092	8.32	2.05	6.4	93.6	0.0	-0.08	0.81	0.75	0.91	3.41	16176	2026	5	0	0	0	0	logfile
✔	7UDC	26456	2022-06-02	2022-03-18	3.7	3.83	3.54	3.8	0.003	0.54	0.0	0.04	14.90	0.00	2.200	7.93	0.28	3.3	96.7	0.0	1.79	0.71	0.80	1.93	3.8	0.003	0.54	0.0	0.04	16.94	0.00	2.094	7.16	0.14	3.4	96.6	0.0	2.22	0.36	0.74	0.82	1.66	6425	806	3	0	0	0	0	logfile
✔	7UDB	26455	2022-06-02	2022-03-18	3.5	3.64	3.39	3.6	0.003	0.50	0.0	0.04	15.55	0.00	2.182	6.46	0.14	2.8	97.2	0.0	1.74	0.77	0.82	1.51	3.6	0.003	0.54	0.0	0.04	16.78	0.00	2.237	7.08	0.00	2.8	97.2	0.0	1.99	0.35	0.78	0.84	1.52	6472	807	3	0	0	0	0	logfile
✔	7X9B	33070	2022-06-02	2022-03-15	3.4	3.88	—	3.9	0.003	0.51	0.0	0.04	12.10	0.00	2.284	8.93	0.13	4.0	96.0	0.0	-3.52	0.64	0.75	1.20	3.8	0.003	0.78	0.0	0.04	14.98	0.00	2.108	14.65	0.00	6.1	93.9	0.0	-1.19	1.78	0.64	0.79	1.33	7242	946	5	0	0	0	0	logfile
✔	7X9A	33069	2022-06-02	2022-03-15	3.2	3.87	—	3.6	0.003	0.49	0.0	0.04	10.37	0.00	2.251	7.31	0.00	3.0	97.0	0.0	-2.79	0.67	0.69	1.31	3.6	0.003	0.71	0.0	0.04	14.41	0.00	2.180	14.68	0.00	4.5	95.5	0.0	-0.75	0.75	0.70	0.81	1.64	7156	950	5	0	0	0	0	logfile
✔	7X9C	33071	2022-06-02	2022-03-15	3.0	3.24	—	3.2	0.002	0.51	0.0	0.04	10.16	0.00	2.208	8.90	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.70	0.0	0.04	14.62	0.00	2.164	12.90	2.39	3.4	96.6	0.0	-0.36	0.64	0.61	0.78	1.87	7219	945	5	0	0	0	0	logfile
✔	7UB0	26433	2022-06-04	2022-03-14	3.31	3.57	3.27	3.4	0.003	0.47	0.0	0.04	13.05	0.00	2.205	5.06	0.04	2.0	98.0	0.0	-0.12	0.85	0.86	3.45	3.4	0.004	0.49	0.0	0.04	13.94	0.00	2.159	5.24	0.15	2.5	97.5	0.0	0.29	0.23	0.86	0.88	3.33	24993	3109	16	0	50	0	0	logfile
✔	7UB6	26436	2022-06-04	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.64	0.0	0.05	13.00	0.01	2.229	3.41	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.006	0.58	0.0	0.04	13.93	0.00	2.104	5.60	0.04	4.1	95.9	0.0	0.06	0.26	0.85	0.87	3.02	24762	3105	10	0	36	0	0	logfile

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