Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZC1	39919	2024-06-24	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.004	0.64	0.0	0.05	13.51	0.00	2.213	12.41	0.00	5.7	94.3	0.0	-1.50	0.57	0.75	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8Z9Z	39873	2024-06-27	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.51	0.0	0.04	18.44	0.00	2.229	9.18	3.55	2.7	97.3	0.0	2.59	1.12	0.64	0.80	1.58	12648	1519	8	0	6	0	0	logfile
✔	8Z9Q	39867	2024-06-27	2024-04-23	2.33	2.83	2.42	2.7	0.003	0.53	0.0	0.04	13.21	0.00	2.117	8.28	0.00	3.5	96.5	0.0	0.58	0.70	0.83	4.40	2.7	0.003	0.56	0.0	0.04	15.93	0.00	2.131	8.89	1.41	3.5	96.5	0.0	0.53	0.38	0.71	0.85	4.38	12362	1505	4	9	1	0	0	logfile
✔	8Z9A	39858	2024-06-27	2024-04-23	3.0	3.24	3.08	3.3	0.005	0.98	0.0	0.04	16.72	0.01	2.163	6.19	1.56	2.3	97.7	0.0	2.18	0.58	0.81	1.75	3.3	0.003	0.53	0.0	0.04	16.73	0.00	2.178	6.07	2.19	2.3	97.7	0.0	2.36	0.29	0.54	0.79	1.85	13021	1557	8	0	8	0	0	logfile
✔	8Z8J	39848	2024-06-28	2024-04-22	3.16	3.46	3.17	3.4	0.002	0.55	0.0	0.04	13.58	0.01	2.218	9.57	0.00	4.7	95.3	0.0	-0.26	0.79	0.87	2.49	3.4	0.004	0.59	0.0	0.04	15.31	0.00	2.200	9.75	1.60	5.0	95.0	0.0	0.07	0.38	0.81	0.90	2.50	13766	1665	5	15	0	0	0	logfile
✔	8Z90	39852	2024-06-28	2024-04-22	2.87	3.20	2.88	3.1	0.003	0.67	0.0	0.04	14.44	0.01	2.113	10.76	0.00	3.8	96.2	0.0	-0.73	0.81	0.88	3.65	3.1	0.003	0.60	0.0	0.04	16.71	0.00	2.133	11.02	1.34	3.8	96.2	0.0	0.10	1.00	0.80	0.89	3.57	13481	1575	6	35	1	0	0	logfile
✔	8Z8X	39850	2024-06-28	2024-04-22	3.06	3.36	3.12	3.3	0.003	0.61	0.0	0.04	14.96	0.01	2.148	12.31	0.00	4.9	95.1	0.0	-0.67	0.80	0.87	2.83	3.3	0.003	0.80	1.0	0.04	16.26	0.00	2.158	11.05	1.22	4.6	95.4	0.0	-0.32	1.33	0.81	0.90	2.70	14768	1730	6	35	1	0	0	logfile
✔	8Z8N	39849	2024-06-27	2024-04-22	2.79	3.11	2.79	3.0	0.003	0.56	0.0	0.04	12.85	0.01	2.114	10.07	0.00	4.2	95.8	0.0	-0.39	0.75	0.84	2.78	3.0	0.005	0.69	0.0	0.04	16.10	0.00	2.046	11.15	2.14	4.6	95.4	0.0	-0.14	1.35	0.76	0.87	2.80	12485	1510	5	15	0	0	0	logfile
✔	8Z85	39838	2024-06-27	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.002	0.52	0.0	0.04	15.46	0.00	2.189	7.52	1.16	2.8	97.2	0.0	1.02	1.10	0.79	0.87	4.31	10467	1256	5	18	0	0	0	logfile
✔	9BH9	44537	2024-06-27	2024-04-19	3.5	3.53	3.42	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.5	0.003	0.64	0.0	0.04	17.61	0.00	2.205	7.95	1.92	2.2	97.8	0.0	0.82	1.87	0.74	0.77	1.48	13155	1574	4	50	0	0	0	logfile
✔	9BH8	44536	2024-06-27	2024-04-19	3.6	3.61	3.50	3.5	0.003	0.64	0.0	0.04	15.49	0.01	2.310	1.53	0.15	0.7	99.3	0.0	-2.28	0.74	0.75	2.34	3.5	0.003	0.67	0.0	0.04	17.54	0.00	2.156	9.76	1.84	2.2	97.8	0.0	0.84	1.23	0.76	0.76	1.46	13051	1574	4	44	0	0	0	logfile
✔	9BHA	44538	2024-06-27	2024-04-19	3.5	3.62	3.42	3.6	0.003	0.65	0.0	0.04	15.47	0.01	2.343	1.70	0.00	0.5	99.4	0.1	-1.83	0.72	0.77	2.78	3.6	0.006	0.73	0.0	0.04	18.04	0.00	2.164	8.91	2.20	3.1	96.9	0.0	0.33	0.81	0.74	0.79	2.13	13264	1586	4	49	0	0	0	logfile
✔	9BH7	44535	2024-06-27	2024-04-19	3.5	3.43	3.54	3.6	0.003	0.64	0.0	0.04	12.66	0.01	2.370	1.58	0.00	0.7	99.2	0.1	-1.16	0.83	0.78	2.21	3.6	0.003	0.59	0.0	0.04	15.81	0.00	2.192	7.98	2.32	2.1	97.9	0.0	2.05	2.05	0.83	0.78	0.89	12166	1544	2	0	0	0	0	logfile
✔	9BEi	44479	2024-06-25	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.005	0.81	0.0	0.05	14.48	0.01	2.094	30.93	0.00	11.7	88.3	0.0	-1.86	0.48	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9EZX	50090	2024-06-29	2024-04-14	2.55	3.31	2.59	3.1	0.005	0.74	0.0	0.04	15.19	0.00	2.072	4.71	1.03	2.3	97.7	0.0	2.19	0.85	0.87	3.81	3.1	0.003	0.73	1.0	0.04	16.07	0.00	1.877	9.06	1.13	2.0	98.0	0.0	2.41	0.53	0.83	0.86	3.33	18585	2302	2	0	0	0	0	logfile
✔	9EZ8	50071	2024-06-29	2024-04-11	2.7	2.74	2.62	2.7	0.003	0.54	0.0	0.05	10.65	0.02	2.160	5.49	3.36	0.0	100.0	0.0	2.00	0.82	0.87	3.78	2.7	0.005	0.56	0.0	0.05	16.43	0.00	2.128	6.10	2.98	1.6	98.4	0.0	0.48	0.55	0.81	0.88	3.54	69480	9420	60	0	0	0	0	logfile
✔	8Z1E	39724	2024-06-25	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.004	0.54	0.0	0.04	15.39	0.00	2.280	5.94	3.92	1.9	98.1	0.0	2.53	0.31	0.65	0.86	1.61	6516	834	3	0	0	0	0	logfile
✔	9BBL	44421	2024-06-26	2024-04-06	2.5	2.33	2.51	2.6	0.011	2.11	2.0	0.10	10.02	0.01	2.489	0.19	0.00	9.7	88.9	1.4	-2.48	0.27	0.65	5.75	2.6	0.004	0.65	0.0	0.05	15.78	0.00	2.215	2.79	0.85	7.9	92.1	0.0	-2.87	0.82	0.39	0.83	5.64	10395	666	9	0	0	0	5301	logfile
✔	9BBM	44422	2024-06-25	2024-04-06	3.2	3.01	3.08	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.66	0.0	0.05	16.39	0.00	2.149	7.90	1.79	8.3	90.7	0.9	-3.08	1.33	0.34	0.73	3.97	6966	444	6	0	0	0	3558	logfile
✔	9EWQ	50022	2024-06-27	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.83	1.0	0.05	15.11	0.00	2.141	6.08	2.11	3.8	96.2	0.0	-1.07	0.24	0.77	0.88	3.27	11904	1540	4	0	0	0	0	logfile

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