Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WRQ	32735	2024-06-25	2022-01-27	3.6	4.08	3.17	3.8	0.011	1.29	1.0	0.08	15.48	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.71	0.0	0.04	15.29	0.00	2.255	4.25	1.96	12.0	87.8	0.1	-3.77	0.60	0.87	0.87	1.91	6247	798	5	0	7	0	0	logfile
✔	7WR9	32719	2024-06-24	2022-01-26	3.24	3.43	—	3.4	0.006	1.05	1.0	0.06	17.10	0.01	2.350	3.92	1.15	9.6	89.9	0.5	-2.72	0.56	0.81	3.11	3.4	0.003	0.63	0.0	0.04	15.43	0.01	2.177	5.49	3.45	7.7	92.1	0.2	-1.61	0.34	0.57	0.83	2.38	3266	411	5	0	5	0	0	logfile
✔	7QXB	14197	2024-06-29	2022-01-26	3.9	4.10	3.83	3.4	0.010	1.46	6.0	0.10	22.18	0.01	2.203	7.40	0.47	4.6	95.0	0.3	-2.07	0.78	0.73	0.86	3.4	0.003	0.73	0.0	0.04	23.12	0.00	2.058	15.86	2.99	4.6	95.4	0.1	-0.28	1.45	0.78	0.72	0.65	17053	1494	7	278	0	0	0	logfile
✔	7WQW	32714	2024-06-24	2022-01-26	3.2	3.57	—	3.4	0.003	0.49	0.0	0.04	10.25	0.00	2.272	8.99	4.47	6.7	93.3	0.0	-4.30	0.77	0.75	2.23	3.5	0.003	0.65	0.0	0.04	14.65	0.00	2.185	13.61	2.82	9.3	90.7	0.0	-2.58	1.40	0.79	0.79	2.55	3983	496	4	0	9	0	0	logfile
✔	7WQX	32715	2024-06-24	2022-01-26	2.7	2.26	—	3.2	0.003	0.53	0.0	0.04	11.77	0.00	2.181	9.03	2.56	6.0	94.0	0.0	-3.61	0.73	0.65	2.93	3.2	0.003	0.71	0.0	0.05	14.33	0.00	2.191	14.76	2.33	7.2	92.8	0.0	-1.64	0.83	0.76	0.69	2.01	4022	501	1	0	9	0	0	logfile
✔	7WRi	32727	2024-06-25	2022-01-26	3.03	3.18	—	3.2	0.003	0.58	1.0	0.04	15.54	0.00	2.099	6.76	2.03	6.0	94.0	0.0	-4.19	0.73	0.80	2.23	3.1	0.003	0.59	0.0	0.04	16.73	0.00	1.994	7.95	2.61	7.5	92.5	0.0	-0.85	0.39	0.75	0.83	1.67	6431	790	4	0	2	0	0	logfile
✔	7WR8	32718	2024-06-24	2022-01-26	3.5	3.74	—	3.8	0.008	1.16	0.0	0.06	13.72	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.003	0.65	0.0	0.04	15.47	0.00	2.162	10.26	3.12	9.0	91.0	0.0	-2.54	0.41	0.50	0.77	2.52	3286	417	4	0	3	0	0	logfile
✔	7WQZ	32716	2024-06-24	2022-01-26	3.7	4.25	—	4.0	0.003	0.54	0.0	0.04	10.73	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.1	0.003	0.79	0.0	0.05	13.84	0.00	2.120	19.16	3.79	12.0	88.0	0.0	-2.84	0.74	0.83	0.78	1.74	3974	496	4	0	9	0	0	logfile
✔	7WR7	32717	2024-06-24	2022-01-26	3.1	3.81	—	3.8	0.004	0.61	0.0	0.04	10.28	0.00	2.309	10.13	3.29	9.1	90.9	0.0	-4.53	0.72	0.72	2.80	3.8	0.003	0.66	0.0	0.05	14.03	0.00	2.176	11.67	2.82	10.4	89.6	0.0	-2.48	0.69	0.71	0.74	2.53	3995	496	4	0	10	0	0	logfile
✔	7TQD	26066	2024-06-25	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.61	0.0	0.04	14.85	0.00	1.062	4.49	0.99	1.9	98.1	0.0	0.85	2.47	0.81	0.83	3.66	8690	1096	3	0	5	0	0	logfile
✔	7WRJ	32728	2024-06-24	2022-01-26	4.08	4.24	—	4.2	0.009	1.32	0.0	0.07	14.01	0.01	2.255	12.35	0.55	11.5	87.8	0.7	-2.57	0.62	0.70	—	4.1	0.004	0.82	0.0	0.05	13.74	0.01	2.131	21.31	0.00	9.5	90.0	0.5	-2.20	1.65	0.65	0.75	—	3289	418	4	0	2	0	0	logfile
✔	7QXA	14196	2024-06-28	2022-01-26	3.2	3.14	3.21	3.2	0.010	1.18	0.0	0.09	22.12	0.01	2.254	0.91	0.28	6.0	93.6	0.4	-3.16	0.69	0.71	3.06	3.1	0.006	0.74	0.0	0.04	22.16	0.01	2.103	10.49	1.77	5.7	94.2	0.1	-0.39	0.72	0.75	0.81	2.58	15576	1247	6	265	0	0	0	logfile
✔	7TPH	26055	2024-06-30	2022-01-25	3.58	4.03	—	3.6	0.013	1.76	5.0	0.10	12.02	0.01	2.501	0.16	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.003	0.58	0.0	0.04	12.26	0.00	2.198	4.41	0.46	4.8	95.1	0.1	0.36	1.93	0.84	0.86	2.43	22180	2912	14	0	52	0	0	logfile
✔	7TPi	26056	2024-06-30	2022-01-25	2.3	2.38	—	2.3	0.013	1.55	12.0	0.10	10.36	0.01	2.100	2.28	0.49	2.1	97.9	0.0	0.35	0.75	0.78	5.09	2.3	0.003	0.61	0.0	0.05	12.90	0.00	2.206	2.91	1.15	1.3	98.7	0.0	0.86	1.11	0.72	0.74	4.79	21168	2862	12	0	54	0	0	logfile
✔	7TPL	26059	2024-06-30	2022-01-25	3.87	4.36	—	3.8	0.013	1.79	10.0	0.10	13.64	0.02	2.519	0.40	1.94	8.6	90.3	1.1	-1.79	0.84	0.83	2.53	3.8	0.004	0.69	0.0	0.04	14.21	0.00	2.055	9.74	1.67	7.4	92.5	0.1	-0.33	0.55	0.84	0.83	1.64	19992	2485	18	0	46	0	0	logfile
✔	7QWL	14188	2024-06-24	2022-01-25	3.47	3.11	2.99	3.5	0.012	2.27	14.0	0.13	13.78	0.01	2.501	3.69	1.06	11.3	88.2	0.5	-3.35	0.45	0.81	5.36	3.5	0.005	0.78	0.0	0.05	16.16	0.00	2.070	11.21	4.76	11.3	88.7	0.0	-3.25	3.78	0.37	0.81	4.64	3258	405	3	0	0	0	0	logfile
✔	7TPK	26058	2024-06-24	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.002	0.56	0.0	0.04	14.88	0.00	2.386	3.89	0.72	2.6	97.4	0.0	-0.86	1.24	0.64	0.80	3.33	1484	194	1	0	1	0	0	logfile
✔	7TPJ	26057	2024-06-24	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.62	0.0	0.04	16.48	0.00	2.253	8.15	1.60	5.0	95.0	0.0	0.73	1.42	0.60	0.72	1.81	4758	626	3	0	0	0	0	logfile
✔	7QWM	14189	2024-06-24	2022-01-25	2.76	2.21	2.47	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.004	0.68	0.0	0.05	17.24	0.00	2.109	9.54	0.79	6.3	93.7	0.0	-2.85	0.51	0.37	0.82	6.28	3255	405	3	0	0	0	0	logfile
✔	7QWG	14187	2024-06-24	2022-01-25	3.38	3.26	2.98	3.3	0.012	2.34	10.0	0.15	14.89	0.01	2.525	0.31	0.26	10.0	90.0	0.0	-3.26	0.41	0.82	4.16	3.3	0.004	0.74	0.0	0.05	17.03	0.00	2.223	11.06	3.44	10.0	90.0	0.0	-3.56	2.40	0.37	0.83	3.54	3258	405	3	0	0	0	0	logfile

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