Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TY6	41711	2024-06-26	2023-08-24	3.3	3.52	3.45	3.5	0.002	0.44	0.0	0.04	11.55	0.00	2.144	4.89	2.71	2.1	97.9	0.0	2.36	0.74	0.81	2.58	3.5	0.004	0.60	0.0	0.04	15.23	0.01	2.001	8.32	2.62	2.3	97.7	0.0	2.08	0.60	0.73	0.80	2.04	9678	1260	6	0	0	0	0	logfile
✔	8QBN	18316	2024-06-25	2023-08-24	3.2	3.27	3.06	3.2	0.004	0.59	0.0	0.05	14.30	0.00	2.206	4.37	0.27	4.3	95.7	0.0	-0.65	0.84	0.87	3.32	3.3	0.004	0.54	0.0	0.04	15.25	0.00	2.227	4.45	1.73	4.7	95.3	0.0	-0.38	0.19	0.85	0.89	3.09	7021	897	6	0	3	0	0	logfile
✔	8TXW	41707	2024-06-27	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	1.328	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.004	0.58	0.0	0.03	27.35	0.00	2.163	7.72	0.83	2.5	97.4	0.1	2.54	0.35	0.88	0.89	0.69	12835	857	12	294	0	0	0	logfile
✔	8TXX	41708	2024-06-27	2023-08-24	3.7	3.96	3.60	3.8	0.004	0.55	0.0	0.03	26.69	0.00	1.329	8.69	0.00	2.9	97.1	0.0	2.62	0.86	0.88	1.17	3.8	0.004	0.57	0.0	0.03	27.44	0.00	2.090	8.23	2.72	3.4	96.6	0.0	2.81	1.39	0.87	0.88	0.86	12969	873	12	294	0	0	0	logfile
✔	8TY1	41710	2024-06-27	2023-08-24	3.46	3.78	3.53	3.7	0.005	0.89	0.0	0.05	19.17	0.01	2.005	22.87	0.68	10.5	89.0	0.5	-2.57	0.70	0.59	0.78	3.7	0.006	0.84	0.0	0.05	18.24	0.01	1.974	28.20	6.28	12.3	87.3	0.4	-2.84	0.47	0.72	0.64	0.81	13508	1675	6	0	12	0	0	logfile
✔	8W41	37260	2024-06-27	2023-08-23	3.54	2.42	3.62	2.0	0.008	0.91	2.0	0.06	15.40	0.01	1.918	17.98	1.63	5.0	94.9	0.1	-1.05	0.72	0.71	2.32	2.1	0.003	0.67	0.0	0.04	16.81	0.00	1.931	14.32	1.71	2.6	97.3	0.1	0.82	0.98	0.71	0.70	1.66	11859	1455	5	0	7	0	0	logfile
✔	8TXB	41679	2024-06-25	2023-08-23	3.9	4.67	—	3.9	0.012	1.13	4.0	0.05	13.61	0.01	2.101	12.59	0.57	7.2	91.8	1.0	-3.20	0.58	0.79	1.71	3.9	0.003	0.71	0.0	0.04	13.96	0.01	2.037	12.70	2.54	7.4	92.1	0.5	-1.43	0.56	0.58	0.80	1.65	54748	7576	4	0	0	0	0	logfile
✔	8QA5	18299	2024-06-27	2023-08-22	3.14	3.29	3.20	3.3	0.016	1.94	17.0	0.17	15.49	0.01	2.267	2.48	1.48	4.7	95.1	0.1	-0.88	0.61	0.65	2.67	3.3	0.004	0.66	0.0	0.04	15.79	0.00	1.954	13.11	2.33	6.5	93.5	0.0	0.60	1.18	0.64	0.70	1.35	10338	814	4	0	1	0	4771	logfile
✔	8KHP	37247	2024-06-28	2023-08-22	3.67	4.90	3.71	3.6	0.002	0.62	0.0	0.04	11.29	0.00	2.213	5.29	0.00	3.2	96.3	0.4	1.44	0.86	0.80	1.59	3.6	0.004	0.58	0.0	0.04	12.90	0.00	2.176	7.22	0.78	5.0	94.8	0.1	1.48	1.28	0.89	0.87	1.22	16023	2702	6	0	0	0	0	logfile
✔	8QA6	18300	2024-06-29	2023-08-22	2.91	3.22	3.02	3.2	0.010	1.08	0.0	0.10	17.51	0.01	2.072	6.69	0.52	3.4	96.6	0.0	-0.54	0.60	0.80	3.35	3.2	0.003	0.56	0.0	0.04	17.48	0.00	2.066	7.30	1.25	2.1	97.9	0.0	2.09	0.70	0.61	0.81	3.11	17808	1106	4	0	6	0	8720	logfile
✔	8QA4	18298	2024-06-25	2023-08-22	2.8	2.99	2.83	3.0	0.023	2.29	24.0	0.20	15.90	0.01	2.296	3.62	1.45	3.5	96.5	0.0	-2.38	0.63	0.78	3.60	3.0	0.003	0.60	0.0	0.04	17.70	0.00	1.801	9.38	1.21	2.9	97.1	0.0	-0.42	1.08	0.60	0.80	2.59	7506	462	6	0	0	28	3686	logfile
✔	8KHR	37249	2024-06-28	2023-08-22	3.25	3.87	3.24	3.7	0.003	0.63	0.0	0.04	16.93	0.00	2.125	8.14	0.62	7.9	92.1	0.0	-1.23	0.81	0.78	2.40	3.7	0.005	0.67	0.0	0.04	17.03	0.00	2.075	10.62	5.57	12.2	87.8	0.0	-1.50	0.38	0.84	0.84	2.12	8320	1138	5	0	0	0	0	logfile
✔	8TX1	41674	2024-06-27	2023-08-22	3.62	4.05	3.79	3.4	0.006	0.92	0.0	0.04	15.94	0.01	2.136	12.74	0.20	6.6	93.2	0.2	0.18	0.34	0.51	0.26	3.3	0.003	0.73	0.0	0.04	16.28	0.01	2.132	14.89	3.23	8.7	91.0	0.3	-1.13	1.49	0.35	0.54	0.65	13687	1894	1	0	0	0	0	logfile
✔	8TWV	41672	2024-06-27	2023-08-21	3.4	3.51	3.33	3.5	0.004	0.73	0.0	0.05	15.80	0.01	2.244	11.78	0.07	4.9	95.1	0.0	-1.53	0.66	0.83	2.48	3.5	0.004	0.57	0.0	0.05	16.50	0.00	2.237	6.48	4.19	4.4	95.6	0.0	-0.31	0.42	0.70	0.86	2.27	12720	1550	10	0	5	0	0	logfile
✔	8KH5	37237	2024-06-25	2023-08-21	2.83	3.13	2.90	3.2	0.008	0.85	1.0	0.08	12.85	0.01	2.103	11.08	0.26	2.9	97.1	0.0	0.90	0.59	0.74	3.40	3.2	0.003	0.55	0.0	0.04	15.24	0.00	2.138	9.58	1.54	1.9	98.1	0.0	1.38	1.25	0.61	0.79	3.23	7838	1031	6	0	2	0	0	logfile
✔	8KH4	37236	2024-06-25	2023-08-21	3.1	3.38	3.16	3.4	0.009	1.01	9.0	0.08	14.02	0.01	2.049	16.56	0.40	2.8	97.2	0.0	0.62	0.59	0.72	2.53	3.4	0.003	0.57	0.0	0.04	15.11	0.00	2.110	11.98	2.15	1.7	98.3	0.0	1.11	1.15	0.63	0.77	2.09	7521	1001	6	0	1	0	0	logfile
✔	8Q9T	18288	2024-06-30	2023-08-21	2.84	3.06	2.88	3.0	0.003	0.47	0.0	0.04	13.30	0.00	2.200	3.21	0.00	2.4	97.6	0.0	1.09	0.66	0.82	3.48	3.0	0.002	0.47	0.0	0.04	15.11	0.00	2.228	3.89	0.80	2.1	97.9	0.0	1.59	0.25	0.76	0.88	2.81	20927	2809	5	4	0	0	0	logfile
✔	8TWZ	41673	2024-06-26	2023-08-21	3.17	3.17	3.11	3.2	0.004	0.71	0.0	0.05	14.02	0.01	2.309	5.99	0.00	7.6	92.4	0.0	-0.87	0.68	0.82	3.33	3.2	0.002	0.50	0.0	0.04	14.74	0.00	2.225	5.72	1.94	5.4	94.6	0.0	-0.19	0.42	0.65	0.83	3.35	11270	1370	10	0	5	0	0	logfile
✔	8TWE	41667	2024-06-27	2023-08-21	2.55	3.04	2.52	2.9	0.003	0.48	0.0	0.04	10.13	0.00	1.425	1.05	0.13	0.5	99.5	0.0	1.05	0.76	0.87	5.13	2.9	0.002	0.47	0.0	0.04	13.28	0.00	2.171	2.63	0.40	1.0	99.0	0.0	0.99	0.61	0.77	0.89	4.68	13305	833	4	0	0	0	6622	logfile
✔	8KHF	37243	2024-06-27	2023-08-21	3.13	3.56	3.30	3.5	0.006	0.67	0.0	0.04	12.89	0.00	2.169	8.59	0.00	3.1	96.9	0.0	-2.87	0.64	0.84	2.90	3.5	0.003	0.60	0.0	0.04	15.37	0.00	2.144	6.97	2.15	1.9	98.1	0.0	2.15	0.50	0.65	0.86	2.15	12128	1596	20	0	1	0	0	logfile

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