Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q8R	18258	2024-06-24	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.007	0.86	0.0	0.06	16.75	0.00	2.274	4.81	6.06	8.6	91.4	0.0	-1.70	2.41	0.46	0.88	6.08	3468	456	6	0	0	0	0	logfile
✔	8TVV	41652	2024-06-25	2023-08-18	3.7	4.35	3.80	3.9	0.004	0.62	0.0	0.05	13.42	0.00	1.785	8.84	0.00	4.1	95.9	0.1	-0.09	0.86	0.76	1.61	3.9	0.003	0.54	0.0	0.04	14.51	0.00	1.905	9.84	0.89	4.6	95.3	0.1	0.67	1.24	0.87	0.78	1.26	58341	3747	21	56	9	0	28238	logfile
✔	8Q8C	18250	2024-06-25	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.50	0.0	0.05	15.18	0.00	2.146	1.06	0.81	1.4	98.6	0.0	-0.92	1.43	0.39	0.90	7.80	6618	429	6	0	0	0	3372	logfile
✔	8Q8L	18254	2024-06-24	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	3.2	0.006	1.39	0.0	0.05	14.32	0.00	2.064	6.19	3.85	4.8	95.2	0.0	-2.50	0.75	0.43	0.83	4.78	3405	447	6	0	0	0	0	logfile
✔	8TVF	41640	2024-06-26	2023-08-18	2.8	3.25	2.53	3.0	0.014	1.36	0.0	0.09	12.90	0.01	2.371	0.75	0.28	1.4	98.4	0.2	0.03	0.86	0.84	4.74	3.0	0.003	0.57	0.0	0.04	12.94	0.00	2.229	3.42	0.93	1.9	97.9	0.2	1.02	0.49	0.86	0.89	4.31	10461	1296	12	0	12	564	0	logfile
✔	8Q8E	18252	2024-06-25	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.0	0.003	0.80	0.0	0.05	15.19	0.01	2.133	12.17	6.15	6.8	93.2	0.0	-3.35	1.88	0.35	0.78	2.71	6810	894	12	0	0	0	0	logfile
✔	8Q8S	18259	2024-06-26	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	2.2	0.003	0.68	0.0	0.05	16.25	0.01	2.024	5.56	1.35	5.4	94.6	0.0	-2.75	1.86	0.31	0.79	4.99	10611	684	9	0	0	0	5409	logfile
✔	8Q8F	18253	2024-06-24	2023-08-18	2.93	2.97	2.77	3.0	0.011	1.82	0.0	0.08	12.08	0.01	2.504	0.00	0.76	5.4	94.6	0.0	-1.60	0.37	0.78	6.53	3.0	0.007	0.79	0.0	0.05	16.93	0.00	2.186	4.95	3.79	3.6	96.4	0.0	-2.12	3.80	0.42	0.91	4.91	3468	456	6	0	0	0	0	logfile
✔	8TVH	41642	2024-06-25	2023-08-18	3.6	3.64	3.38	3.6	0.012	1.38	0.0	0.08	12.11	0.01	2.491	1.72	0.52	2.3	97.4	0.3	1.54	0.73	0.80	3.73	3.6	0.005	0.66	0.0	0.04	15.92	0.00	2.275	4.70	2.60	4.2	95.8	0.0	2.44	0.61	0.77	0.85	3.05	6744	939	12	0	3	0	0	logfile
✔	8Q88	18249	2024-06-24	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.004	0.73	0.0	0.05	13.64	0.00	2.265	6.79	1.01	3.6	96.4	0.0	-2.41	1.31	0.39	0.87	5.37	3468	456	6	0	0	0	0	logfile
✔	8TVS	41650	2024-06-25	2023-08-18	4.4	4.59	4.48	4.1	0.004	0.77	0.0	0.05	15.19	0.00	1.713	10.23	0.00	4.5	95.5	0.1	-0.62	0.83	0.76	—	4.1	0.003	0.51	0.0	0.04	15.41	0.00	1.893	12.80	0.00	5.7	94.2	0.1	0.02	0.47	0.84	0.77	—	56913	3697	22	104	443	0	24971	logfile
✔	8TVW	41653	2024-06-26	2023-08-18	3.6	4.13	3.72	3.9	0.004	0.58	0.0	0.04	13.74	0.01	1.903	7.21	0.00	4.0	95.9	0.1	0.31	0.83	0.76	2.24	3.9	0.003	0.53	0.0	0.04	15.17	0.00	1.527	9.19	0.73	4.7	95.2	0.1	0.40	0.49	0.83	0.78	1.90	61431	3748	21	56	9	0	30468	logfile
✔	8KG5	37210	2024-06-27	2023-08-17	3.17	3.45	3.27	3.5	0.010	1.15	0.0	0.06	14.60	0.01	2.212	12.39	0.49	5.5	94.5	0.0	-3.81	0.71	0.85	2.97	3.5	0.003	0.68	0.0	0.05	16.20	0.00	2.156	9.15	2.46	3.6	96.3	0.1	-0.88	2.26	0.70	0.86	2.36	12307	1577	8	0	3	0	0	logfile
✔	8Q7W	18235	2024-06-25	2023-08-17	3.9	4.12	4.10	3.9	0.004	0.89	1.0	0.05	13.28	0.01	1.841	3.29	0.08	3.6	96.3	0.1	-2.86	0.63	0.62	0.88	3.9	0.005	0.69	0.0	0.04	15.75	0.00	1.722	10.56	1.49	7.9	92.1	0.0	-0.79	1.85	0.66	0.70	1.65	57822	4064	16	104	2	0	26552	logfile
✔	8Q7Y	18244	2024-06-26	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.004	0.71	0.0	0.05	18.98	0.00	2.121	11.93	4.91	7.9	92.1	0.0	-0.91	0.47	0.67	0.83	3.15	10032	1212	4	0	0	0	0	logfile
✔	8KG6	37211	2024-06-30	2023-08-17	3.07	3.71	3.17	3.4	0.004	0.59	0.0	0.04	15.74	0.00	1.954	11.17	1.30	5.1	94.8	0.2	-0.01	0.81	0.81	2.03	3.4	0.003	0.56	1.0	0.04	16.53	0.00	1.928	10.15	1.09	4.7	95.3	0.0	0.22	0.28	0.80	0.82	1.86	70613	8703	27	57	17	0	0	logfile
✔	8Q7T	18233	2024-06-26	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	2.9	0.005	0.63	0.0	0.05	16.61	0.00	2.043	6.25	2.29	2.7	97.3	0.0	-1.53	1.22	0.34	0.83	4.98	10083	654	9	0	0	0	5136	logfile
✔	8Q84	18246	2024-06-30	2023-08-17	3.15	3.94	3.45	3.5	0.003	0.74	0.0	0.04	15.74	0.00	2.054	12.03	0.58	2.3	97.6	0.1	3.51	0.69	0.85	0.94	3.5	0.004	0.71	0.0	0.04	16.69	0.00	2.097	13.29	3.10	2.4	97.5	0.1	4.28	0.51	0.67	0.81	0.88	21802	3115	25	0	0	0	0	logfile
✔	8Q7X	18237	2024-06-30	2023-08-17	4.6	6.76	6.70	4.5	0.004	0.90	1.0	0.05	12.54	0.01	1.841	2.96	0.16	3.9	96.0	0.1	-3.26	0.78	0.64	—	4.5	0.003	0.64	0.0	0.04	13.10	0.00	1.744	10.10	0.00	5.6	94.4	0.0	-0.29	1.03	0.78	0.76	—	72326	6100	16	104	2	0	30971	logfile
✔	8KG8	37213	2024-06-26	2023-08-17	4.23	6.03	4.25	4.2	0.002	0.58	0.0	0.04	14.46	0.00	1.997	13.72	0.01	4.1	95.9	0.0	0.19	0.84	0.78	—	4.2	0.002	0.56	0.0	0.04	14.33	0.00	1.938	16.39	0.03	4.9	95.1	0.0	0.25	1.20	0.86	0.83	—	63829	7950	25	25	17	0	0	logfile

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