Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KG5	37210	2024-06-27	2023-08-17	3.17	3.45	3.27	3.5	0.010	1.15	0.0	0.06	14.60	0.01	2.212	12.39	0.49	5.5	94.5	0.0	-3.81	0.71	0.85	2.97	3.5	0.003	0.68	0.0	0.05	16.20	0.00	2.156	9.15	2.46	3.6	96.3	0.1	-0.88	2.26	0.70	0.86	2.36	12307	1577	8	0	3	0	0	logfile
✔	8Q7Y	18244	2024-06-26	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.004	0.71	0.0	0.05	18.98	0.00	2.121	11.93	4.91	7.9	92.1	0.0	-0.91	0.47	0.67	0.83	3.15	10032	1212	4	0	0	0	0	logfile
✔	8Q7M	18224	2024-06-24	2023-08-16	3.26	3.16	3.21	3.3	0.011	1.96	4.0	0.11	11.70	0.01	2.490	0.38	0.17	3.1	96.9	0.0	-1.88	0.32	0.70	3.84	3.2	0.006	0.76	0.0	0.05	15.05	0.00	2.219	6.33	1.88	1.8	98.2	0.0	-1.83	0.84	0.36	0.87	4.15	5109	669	9	0	0	0	0	logfile
✔	8KFY	37208	2024-06-26	2023-08-16	3.06	2.26	3.16	2.0	0.003	0.54	0.0	0.04	15.79	0.00	2.155	8.49	0.20	1.7	98.3	0.0	1.35	0.78	0.78	2.86	2.0	0.003	0.50	0.0	0.04	16.31	0.00	2.155	7.88	4.05	2.2	97.8	0.0	1.38	0.30	0.78	0.79	2.82	8992	1139	6	0	1	0	0	logfile
✔	8TUG	41623	2024-06-27	2023-08-16	3.5	3.91	3.50	3.4	0.003	0.59	0.0	0.04	15.20	0.01	1.638	7.62	0.12	3.3	96.6	0.1	0.56	0.85	0.77	2.26	3.4	0.003	0.49	0.0	0.04	15.79	0.00	1.941	8.18	0.39	4.2	95.7	0.1	0.48	0.31	0.86	0.80	2.12	65437	3748	22	103	512	0	31001	logfile
✔	8Q7Q	18229	2024-06-24	2023-08-16	3.2	3.61	3.47	3.5	0.004	0.92	1.0	0.05	13.56	0.01	1.841	3.05	0.16	3.9	96.0	0.1	-2.94	0.69	0.76	2.52	3.5	0.006	0.68	0.0	0.04	15.50	0.00	1.936	6.85	1.19	6.7	93.2	0.1	-0.58	0.91	0.70	0.78	2.61	53697	3557	16	104	2	0	25117	logfile
✔	8KFZ	37209	2024-06-26	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.004	0.92	0.0	0.04	16.39	0.00	1.974	16.51	4.86	3.1	96.9	0.0	0.87	0.32	0.72	0.73	1.57	8966	1139	5	0	0	0	0	logfile
✔	8Q7N	18225	2024-06-25	2023-08-16	3.1	3.00	3.16	2.9	0.004	0.65	0.0	0.04	17.57	0.01	2.007	10.28	0.53	5.5	94.4	0.1	-0.14	0.63	0.81	2.58	2.9	0.003	0.63	1.0	0.04	18.03	0.00	2.037	10.59	1.97	4.9	95.1	0.0	0.76	0.36	0.64	0.83	2.27	55463	6565	21	300	0	0	0	logfile
✔	8Q7H	18216	2024-06-29	2023-08-16	4.1	2.84	3.79	1.8	0.004	0.60	0.0	0.04	12.55	0.00	1.333	6.39	0.00	0.8	99.2	0.0	0.60	0.71	0.76	—	2.0	0.003	0.57	0.0	0.04	12.14	0.00	1.989	5.68	0.00	3.8	96.2	0.0	2.51	0.37	0.71	0.76	—	18033	2788	9	0	135	0	0	logfile
✔	8Q7F	18215	2024-06-24	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.003	0.68	0.0	0.05	15.64	0.00	2.107	8.23	1.03	0.7	99.3	0.0	-1.47	0.79	0.39	0.81	3.84	3402	450	6	0	0	0	0	logfile
✔	8Q7P	18228	2024-06-24	2023-08-16	3.28	3.24	3.20	3.3	0.011	1.82	0.0	0.09	11.62	0.01	2.479	0.00	0.00	1.4	98.6	0.0	-1.91	0.36	0.78	5.16	3.3	0.004	0.64	0.0	0.05	16.24	0.00	2.224	6.21	3.08	1.8	98.2	0.0	-2.19	1.41	0.42	0.87	5.27	3402	450	6	0	0	0	0	logfile
✔	8TUP	41628	2024-06-27	2023-08-16	3.3	3.44	3.30	3.4	0.002	0.41	0.0	0.04	14.81	0.00	2.277	4.52	0.00	2.2	97.8	0.0	2.02	0.65	0.78	2.89	3.4	0.005	0.57	0.0	0.04	15.39	0.00	2.208	6.16	2.78	1.6	98.4	0.0	2.36	0.89	0.58	0.80	2.76	12869	1590	12	0	3	66	0	logfile
✔	8Q7L	18219	2024-06-24	2023-08-16	2.82	2.80	2.86	2.9	0.011	1.90	4.0	0.11	11.68	0.01	2.159	2.03	0.00	4.4	95.6	0.0	-2.15	0.34	0.80	5.45	2.9	0.003	0.69	0.0	0.05	16.56	0.00	2.244	5.66	1.03	1.6	98.4	0.0	-2.22	0.81	0.39	0.90	5.11	3375	441	6	0	0	0	0	logfile
✔	8Q7R	18230	2024-06-27	2023-08-16	3.71	2.48	3.70	2.0	0.004	0.74	0.0	0.04	16.34	0.01	1.987	9.49	1.26	8.2	91.8	0.0	-1.10	0.73	0.66	1.76	2.2	0.003	0.64	0.0	0.04	16.80	0.00	2.114	8.03	3.54	6.4	93.6	0.1	-0.48	0.46	0.75	0.71	1.57	12536	1726	10	0	4	0	0	logfile
✔	8KFX	37207	2024-06-26	2023-08-16	2.96	2.23	3.09	2.0	0.004	0.61	0.0	0.04	16.55	0.00	2.189	11.28	0.51	2.5	97.5	0.0	0.90	0.79	0.79	2.90	2.0	0.004	0.57	0.0	0.04	16.98	0.00	2.145	9.55	2.73	2.8	97.2	0.0	1.06	1.08	0.79	0.80	2.64	9001	1139	6	0	1	0	0	logfile
✔	8Q7C	18212	2024-06-30	2023-08-16	2.9	4.06	3.13	3.6	0.004	0.54	0.0	0.04	14.30	0.00	2.140	7.64	3.64	3.1	96.9	0.0	-0.10	0.90	0.90	4.16	3.6	0.004	0.59	0.0	0.04	14.71	0.00	2.139	7.78	3.38	3.2	96.8	0.0	0.09	0.23	0.90	0.90	3.90	21348	2670	3	0	0	0	0	logfile
✔	8TUL	41624	2024-06-27	2023-08-16	2.8	2.90	2.83	2.9	0.003	0.48	0.0	0.04	16.92	0.01	2.121	6.09	2.14	1.3	98.7	0.0	0.50	0.68	0.86	2.31	2.9	0.008	0.71	0.0	0.05	17.28	0.01	2.130	7.50	3.35	1.5	98.5	0.0	2.00	0.30	0.66	0.86	2.40	13070	1585	15	0	14	281	0	logfile
✔	8TU9	41620	2024-06-25	2023-08-15	3.26	3.58	3.38	3.6	0.011	1.68	0.0	0.08	14.55	0.02	2.275	2.59	0.00	4.4	95.6	0.0	-0.68	0.66	0.81	2.08	3.6	0.003	0.60	0.0	0.04	15.37	0.00	2.239	4.21	1.89	4.3	95.7	0.0	0.60	0.47	0.63	0.84	2.68	8390	1066	4	0	8	0	0	logfile
✔	8KFA	37203	2024-06-29	2023-08-15	3.04	3.87	3.20	3.4	0.002	0.48	0.0	0.04	13.59	0.00	2.226	9.28	0.00	2.9	97.1	0.0	-0.20	0.83	0.82	2.55	3.4	0.004	0.58	0.0	0.04	15.03	0.00	2.082	12.75	2.48	3.7	96.3	0.0	-0.38	0.34	0.84	0.85	2.54	18665	2421	9	0	0	0	0	logfile
✔	8TU6	41617	2024-06-30	2023-08-15	3.12	3.16	3.01	3.2	0.004	0.59	0.0	0.04	16.95	0.00	2.021	5.71	0.88	3.0	97.0	0.0	0.51	0.66	0.78	3.49	3.3	0.004	0.52	0.0	0.04	16.88	0.00	2.087	5.80	2.20	3.0	97.0	0.0	1.21	0.47	0.74	0.83	3.25	20338	1233	2	0	0	0	10170	logfile

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