Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KDC	37131	2024-06-29	2023-08-09	3.3	3.76	3.41	3.7	0.003	0.49	0.0	0.04	14.09	0.00	2.001	6.45	0.05	2.6	97.4	0.0	1.17	0.71	0.79	2.09	3.7	0.003	0.51	0.0	0.04	15.50	0.00	2.091	6.32	1.03	3.1	96.9	0.0	1.50	0.25	0.76	0.83	1.84	18808	2329	7	0	3	0	0	logfile
✔	8TR3	41569	2024-06-28	2023-08-09	3.74	4.06	3.63	3.9	0.005	0.72	0.0	0.05	16.05	0.00	2.243	11.81	0.34	8.5	91.5	0.0	-0.94	0.79	0.80	1.34	3.9	0.004	0.71	0.0	0.04	16.47	0.00	2.203	12.89	4.36	8.6	91.4	0.0	-1.34	0.45	0.79	0.82	1.36	16401	2028	21	0	39	0	0	logfile
✔	8TQZ	41566	2024-06-30	2023-08-08	2.9	3.47	2.97	3.4	0.002	0.50	0.0	0.04	17.76	0.00	2.049	6.09	4.50	3.5	96.5	0.0	1.08	0.73	0.81	2.05	3.4	0.003	0.59	0.0	0.04	17.66	0.00	2.210	7.72	4.71	5.1	94.9	0.0	0.59	0.36	0.76	0.85	2.72	22334	2863	10	0	0	0	0	logfile
✔	8KCX	37113	2024-06-26	2023-08-08	2.96	3.37	2.90	3.3	0.005	0.77	0.0	0.06	20.46	0.00	2.273	4.87	0.39	1.8	98.2	0.0	-2.46	0.59	0.81	2.56	3.3	0.004	0.63	0.0	0.04	15.93	0.00	2.141	5.83	4.02	1.4	98.6	0.0	1.24	1.26	0.59	0.82	2.98	9486	1142	12	0	22	0	0	logfile
✔	8KCW	37112	2024-06-26	2023-08-08	2.77	3.13	2.73	3.1	0.005	0.82	0.0	0.05	18.78	0.01	2.126	5.92	0.18	2.8	97.2	0.0	-4.23	0.60	0.82	3.29	3.1	0.003	0.64	0.0	0.04	15.20	0.00	1.959	6.11	1.79	1.9	98.1	0.0	1.15	2.00	0.61	0.85	3.08	10484	1252	12	0	26	0	0	logfile
✔	8TQo	41510	2024-06-26	2023-08-08	3.1	3.83	3.25	3.7	0.002	0.54	0.0	0.04	16.86	0.00	2.202	8.77	0.16	4.5	95.5	0.0	0.14	0.76	0.83	1.75	3.7	0.002	0.55	0.0	0.04	17.14	0.00	2.210	8.36	3.33	4.7	95.3	0.0	0.61	1.01	0.71	0.80	2.49	11122	1437	4	0	0	0	0	logfile
✔	8TQM	41508	2024-06-25	2023-08-07	3.2	3.40	3.14	3.4	0.007	0.92	0.0	0.04	13.43	0.00	1.724	12.07	0.00	2.5	97.5	0.0	2.28	0.62	0.78	2.62	3.4	0.003	0.50	0.0	0.04	14.98	0.00	2.218	7.82	0.92	2.3	97.7	0.0	2.64	0.62	0.57	0.79	2.35	7231	843	2	0	7	0	0	logfile
✔	8KC7	37096	2024-06-28	2023-08-06	3.46	4.35	3.40	3.6	0.003	0.70	0.0	0.04	16.70	0.00	2.211	9.82	0.93	6.6	93.4	0.0	-1.18	0.84	0.79	1.58	3.6	0.002	0.62	0.0	0.04	17.18	0.00	2.131	12.27	2.74	6.6	93.4	0.0	0.26	1.80	0.85	0.84	2.01	14326	1748	6	0	0	0	0	logfile
✔	8KC2	37090	2024-06-25	2023-08-05	2.6	2.24	2.62	2.0	0.005	0.75	0.0	0.05	14.84	0.01	1.829	5.70	0.87	6.9	93.0	0.1	-0.90	0.79	0.81	3.58	2.0	0.003	0.59	0.0	0.04	16.75	0.00	2.063	5.62	1.45	5.5	94.5	0.0	0.04	0.47	0.83	0.85	3.28	6471	790	4	0	5	0	0	logfile
✔	8Q3P	18132	2024-06-25	2023-08-04	3.5	3.78	3.31	3.5	0.004	0.83	0.0	0.04	17.67	0.01	2.041	15.37	1.67	2.6	97.4	0.0	0.46	0.80	0.86	1.72	3.5	0.004	0.69	0.0	0.04	17.17	0.00	1.892	14.07	3.23	2.4	97.6	0.0	0.68	0.69	0.83	0.89	1.69	59922	7542	36	0	36	0	0	logfile
✔	8TP3	41465	2024-06-27	2023-08-04	3.6	3.91	3.62	3.9	0.020	1.72	0.0	0.11	10.55	0.01	2.336	0.86	0.07	1.7	98.3	0.0	0.78	0.72	0.73	2.35	3.9	0.004	0.73	0.0	0.05	15.00	0.00	2.164	13.17	2.77	2.8	97.2	0.0	0.07	1.48	0.73	0.73	1.77	13691	1700	14	0	20	0	0	logfile
✔	8Q3Q	18133	2024-06-25	2023-08-04	3.3	3.73	3.28	3.5	0.004	0.81	0.0	0.04	17.25	0.00	2.089	14.72	3.07	1.9	98.1	0.0	1.28	0.78	0.87	1.62	3.5	0.003	0.68	0.0	0.04	17.02	0.00	1.973	12.92	2.99	1.7	98.3	0.0	1.38	0.63	0.80	0.90	1.87	59922	7542	36	0	36	0	0	logfile
✔	8TP6	41468	2024-06-29	2023-08-04	3.1	3.47	3.28	3.4	0.021	1.77	3.0	0.11	11.87	0.01	2.326	2.28	0.00	1.2	98.8	0.0	1.02	0.74	0.80	3.71	3.4	0.004	0.85	1.0	0.05	14.37	0.00	2.116	11.93	1.56	4.1	95.9	0.0	0.11	1.80	0.72	0.81	2.81	17008	2126	18	0	27	0	0	logfile
✔	8TP5	41467	2024-06-29	2023-08-04	2.9	3.29	2.95	3.2	0.021	1.86	1.0	0.11	10.61	0.01	2.336	1.75	0.11	1.8	98.2	0.0	1.07	0.76	0.79	3.53	3.2	0.003	0.61	0.0	0.04	15.18	0.00	2.122	7.42	1.54	2.7	97.3	0.0	0.70	0.80	0.78	0.85	3.40	17508	2205	18	0	18	0	0	logfile
✔	8TPA	41471	2024-06-29	2023-08-04	3.0	3.16	3.09	3.2	0.022	1.81	0.0	0.11	10.43	0.01	2.338	1.47	0.00	1.3	98.7	0.0	1.11	0.73	0.82	4.65	3.2	0.006	0.89	1.0	0.05	15.38	0.00	2.142	11.32	2.77	3.1	96.9	0.0	0.07	1.34	0.73	0.85	3.34	17286	2154	18	0	18	0	0	logfile
✔	8TPN	41478	2024-06-25	2023-08-04	4.07	4.04	4.01	4.0	0.002	0.46	0.0	0.04	15.10	0.00	2.220	5.18	0.00	2.8	97.2	0.0	2.66	0.74	0.81	—	4.0	0.003	0.52	0.0	0.04	15.07	0.00	2.185	6.00	0.00	2.6	97.4	0.0	2.39	0.33	0.75	0.82	—	8612	1102	4	0	4	0	0	logfile
✔	8TP4	41466	2024-06-27	2023-08-04	3.3	3.25	3.26	3.4	0.020	1.77	7.0	0.10	10.27	0.02	2.221	2.95	0.00	2.6	97.4	0.0	0.69	0.79	0.84	3.98	3.3	0.005	0.66	0.0	0.04	14.64	0.00	2.095	6.33	2.26	3.7	96.2	0.1	0.20	0.73	0.80	0.87	3.21	13472	1678	11	0	18	0	0	logfile
✔	8Q3N	18130	2024-06-30	2023-08-04	2.63	3.29	2.65	3.0	0.003	0.64	0.0	0.04	16.08	0.00	1.991	9.33	1.54	1.6	98.4	0.0	0.95	0.86	0.85	2.16	3.0	0.003	0.64	0.0	0.04	15.92	0.00	1.975	10.35	2.28	1.6	98.4	0.0	0.94	0.87	0.87	0.90	2.18	19912	2508	12	0	10	0	0	logfile
✔	8TP7	41469	2024-06-29	2023-08-04	2.8	3.07	2.89	3.1	0.021	1.80	0.0	0.10	10.25	0.01	1.987	1.53	0.00	1.7	98.3	0.0	0.83	0.76	0.85	4.78	3.1	0.002	0.55	0.0	0.04	14.92	0.00	2.171	5.26	2.37	2.5	97.5	0.0	0.66	1.35	0.70	0.84	3.87	17010	2145	15	0	18	0	0	logfile
✔	8TP2	41464	2024-06-27	2023-08-04	3.1	3.01	3.03	3.2	0.021	1.69	0.0	0.10	10.56	0.01	2.009	1.70	0.00	2.2	97.8	0.0	0.79	0.77	0.85	4.18	3.1	0.003	0.59	0.0	0.04	14.60	0.00	2.170	7.07	1.64	2.7	97.3	0.0	0.48	1.36	0.77	0.87	3.28	13485	1678	11	0	19	0	0	logfile

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