Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VYG	43660	2024-06-24	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.002	0.62	0.0	0.04	15.46	0.00	2.184	6.25	2.39	2.9	97.1	0.0	0.30	1.46	0.54	0.77	2.47	3204	416	4	0	1	0	0	logfile
✔	8Y95	39070	2024-06-26	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.61	0.0	0.04	15.33	0.00	2.234	12.78	4.11	4.9	95.1	0.0	0.20	0.80	0.57	0.79	1.88	9018	1124	4	0	6	0	0	logfile
✔	8VXY	43643	2024-06-27	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.003	0.62	0.0	0.04	18.31	0.00	2.133	16.19	1.28	4.3	95.7	0.0	-0.38	1.37	0.65	0.66	1.14	12324	1406	5	62	1	0	0	logfile
✔	8Y93	39068	2024-06-26	2024-02-06	3.0	3.45	3.17	3.4	0.003	0.60	0.0	0.04	11.79	0.00	2.127	7.36	5.15	2.2	97.8	0.0	-1.85	0.51	0.68	2.29	3.4	0.004	0.69	0.0	0.04	15.65	0.00	2.083	9.40	3.68	4.5	95.5	0.0	0.59	1.09	0.62	0.84	2.38	9055	1130	3	0	3	0	0	logfile
✔	8Y94	39069	2024-06-26	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.004	0.70	0.0	0.04	15.08	0.00	2.170	12.53	3.78	3.4	96.6	0.0	0.85	1.15	0.59	0.79	1.00	9032	1130	2	0	0	0	0	logfile
✔	8VXC	43616	2024-06-26	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.003	0.63	0.0	0.04	17.35	0.00	2.163	13.61	1.79	3.7	96.3	0.0	0.29	0.60	0.75	0.73	1.52	9390	1139	3	22	0	0	0	logfile
✔	8VX9	43613	2024-06-26	2024-02-03	2.65	2.17	2.70	1.9	0.004	0.62	0.0	0.04	13.77	0.00	2.221	11.85	0.08	4.1	95.9	0.0	-0.43	0.74	0.70	2.71	2.0	0.005	0.71	0.0	0.05	16.57	0.01	2.175	16.26	1.51	4.8	95.2	0.0	-0.40	3.18	0.74	0.71	2.06	11244	1433	2	0	0	0	0	logfile
✔	8Y6P	38994	2024-06-26	2024-02-03	3.9	4.26	4.01	4.1	0.004	0.90	0.0	0.05	16.87	0.01	2.064	19.68	1.34	7.1	91.8	1.1	-0.98	0.81	0.77	1.08	4.1	0.003	0.76	0.0	0.05	17.15	0.00	2.154	15.96	4.83	8.1	91.1	0.7	-1.04	2.24	0.82	0.79	1.23	9977	1228	1	0	0	0	0	logfile
✔	8VXA	43615	2024-06-26	2024-02-03	2.79	2.23	2.81	1.9	0.003	0.53	0.0	0.04	15.67	0.00	2.204	10.67	0.00	3.1	96.9	0.0	0.60	0.75	0.73	2.94	1.9	0.003	0.59	0.0	0.04	18.25	0.00	2.104	11.74	2.22	2.7	97.3	0.0	1.09	0.57	0.78	0.77	2.26	9431	1139	3	24	0	0	0	logfile
✔	8VWP	43593	2024-06-28	2024-02-02	3.21	3.46	3.23	3.5	0.012	1.50	4.0	0.09	10.39	0.01	2.359	1.40	0.00	2.2	97.6	0.2	0.79	0.77	0.84	4.06	3.5	0.004	0.61	0.0	0.05	13.48	0.00	2.265	2.38	1.29	2.8	97.2	0.0	0.34	0.49	0.76	0.89	4.18	14820	2012	8	0	4	0	0	logfile
✔	8Y66	38968	2024-06-24	2024-02-01	3.28	3.92	3.35	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.60	0.0	0.04	16.32	0.01	2.132	7.78	3.65	2.4	97.6	0.0	0.61	0.39	0.47	0.70	1.23	3606	467	2	0	1	0	0	logfile
✔	8Y65	38966	2024-06-24	2024-02-01	3.51	3.77	3.42	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.003	0.61	0.0	0.04	15.36	0.00	2.229	10.41	1.86	3.4	96.6	0.0	1.06	0.37	0.45	0.57	1.04	3565	467	2	0	1	0	0	logfile
✔	8RV2	19522	2024-06-29	2024-01-31	3.41	3.57	3.38	3.5	0.002	0.47	0.0	0.04	17.14	0.00	2.017	6.10	0.05	1.8	98.2	0.0	-0.02	0.78	0.81	2.27	3.5	0.002	0.54	0.0	0.04	17.28	0.00	1.989	8.34	2.04	2.2	97.7	0.0	0.43	0.33	0.78	0.82	1.90	17248	2178	10	0	9	0	0	logfile
✔	8VV3	43548	2024-06-27	2024-01-30	2.61	2.94	2.71	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.003	0.55	0.0	0.04	16.90	0.00	2.104	10.87	4.07	4.5	95.5	0.0	2.74	1.15	0.59	0.75	2.15	12172	1548	8	0	4	0	0	logfile
✔	8VUZ	43545	2024-06-25	2024-01-30	3.95	4.14	3.96	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.004	0.71	0.0	0.04	17.50	0.00	2.080	14.58	6.85	7.0	92.9	0.1	0.04	0.40	0.78	0.85	1.79	6626	869	4	0	0	0	0	logfile
✔	8VUW	43542	2024-06-27	2024-01-29	3.19	2.92	3.07	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.52	0.0	0.04	16.49	0.00	2.153	8.86	1.43	3.3	96.7	0.0	-0.70	0.31	0.65	0.82	3.30	13055	1560	10	0	5	0	0	logfile
✔	8RU0	19501	2024-06-27	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.004	0.83	1.0	0.05	16.38	0.00	1.976	6.66	3.62	3.7	96.2	0.1	-0.40	1.30	0.63	0.82	2.38	11660	1476	8	0	11	0	0	logfile
✔	8Y3X	38906	2024-06-25	2024-01-29	3.11	3.35	3.09	3.3	0.007	0.84	0.0	0.05	16.97	0.01	2.075	9.93	1.47	10.3	88.6	1.1	-1.11	0.68	0.77	2.66	3.3	0.004	0.66	0.0	0.04	16.50	0.00	2.138	7.76	6.03	6.7	93.0	0.4	0.52	1.00	0.72	0.85	3.29	7757	1145	7	0	2	0	0	logfile
✔	8RTT	19496	2024-06-29	2024-01-29	3.56	3.72	3.51	3.6	0.004	0.52	0.0	0.04	16.49	0.00	1.317	5.80	0.20	2.2	97.8	0.0	0.18	0.79	0.85	1.76	3.6	0.004	0.74	1.0	0.05	16.55	0.00	1.911	7.82	2.40	3.0	97.0	0.0	0.73	0.36	0.79	0.86	1.67	18155	2274	13	0	14	0	0	logfile
✔	8RU2	19503	2024-06-28	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.62	0.0	0.04	18.18	0.00	1.963	11.45	3.30	4.5	95.4	0.2	0.04	1.00	0.72	0.76	0.78	14773	1849	8	0	6	0	0	logfile

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