Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9NoU	49617	2025-06-06	2025-03-10	2.8	3.00	2.81	3.0	0.004	0.69	0.0	0.05	17.49	0.00	2.394	6.80	1.24	1.1	98.9	0.0	0.16	0.65	0.84	3.03	3.0	0.004	0.61	0.0	0.05	17.63	0.00	2.533	6.26	4.57	0.9	99.1	0.0	0.81	1.00	0.68	0.85	2.77	7519	923	4	0	15	0	0	logfile
✔	9NoW	49619	2025-06-06	2025-03-10	3.1	3.59	3.24	3.6	0.004	0.65	0.0	0.05	17.10	0.01	2.420	7.76	0.97	1.4	98.6	0.0	0.46	0.73	0.83	2.70	3.5	0.004	0.95	1.0	0.05	17.04	0.00	2.357	7.10	4.14	1.3	98.7	0.0	1.01	0.64	0.69	0.83	2.49	7624	936	4	0	15	0	0	logfile
✔	9NoT	49616	2025-06-11	2025-03-10	3.8	3.07	—	3.4	0.003	0.69	0.0	0.04	13.72	0.00	2.550	8.29	0.00	2.2	97.8	0.0	0.15	0.73	0.72	2.59	3.4	0.003	0.69	0.0	0.04	15.47	0.00	2.519	7.88	1.42	2.2	97.8	0.0	0.36	0.50	0.77	0.78	2.36	12359	1542	4	0	16	0	0	logfile
✔	9NoY	49621	2025-06-04	2025-03-10	3.7	3.83	3.57	3.8	0.003	0.61	0.0	0.04	17.43	0.01	2.625	9.70	1.33	2.0	98.0	0.0	1.89	0.48	0.81	1.26	3.8	0.004	0.72	0.0	0.04	18.24	0.01	2.606	11.15	4.89	2.4	97.6	0.0	2.58	0.53	0.50	0.81	1.77	2031	257	1	0	0	0	0	logfile
✔	9NoR	49608	2025-06-11	2025-03-10	3.4	2.47	—	3.5	0.004	0.68	0.0	0.05	17.33	0.00	1.892	8.48	1.91	2.9	97.1	0.0	0.50	0.74	0.77	1.41	3.5	0.003	0.62	0.0	0.04	17.55	0.00	2.529	7.28	4.84	2.5	97.5	0.0	0.79	0.31	0.73	0.79	1.26	12555	1565	4	0	16	0	0	logfile
✔	9NLX	49525	2025-06-17	2025-03-03	3.2	3.64	3.07	3.4	0.004	0.66	0.0	0.05	26.03	0.00	2.291	7.18	1.65	3.6	96.4	0.0	0.97	0.89	0.86	3.50	3.4	0.002	0.53	0.0	0.03	23.87	0.00	2.395	4.36	1.34	1.9	98.1	0.0	2.44	1.02	0.90	0.87	3.14	19770	1443	6	423	0	0	0	logfile
✔	9QAJ	52975	2025-06-10	2025-02-28	2.95	3.99	3.07	3.3	0.005	0.58	0.0	0.03	28.27	0.00	2.149	9.35	0.32	2.5	97.5	0.0	2.60	0.92	0.89	2.24	3.3	0.004	0.63	0.0	0.03	28.37	0.00	2.470	8.39	0.95	2.8	97.2	0.0	3.06	0.29	0.91	0.91	2.32	12144	796	14	290	0	0	0	logfile
✔	9NJK	49485	2025-06-12	2025-02-27	3.37	4.19	3.41	3.8	0.003	0.62	0.0	0.04	13.38	0.00	2.038	11.30	0.07	1.7	98.3	0.0	0.69	0.76	0.77	1.14	3.8	0.002	0.66	0.0	0.04	15.20	0.00	1.973	8.37	1.10	1.5	98.5	0.0	0.94	0.94	0.76	0.79	1.20	13780	1789	10	0	8	0	0	logfile
✔	9M2H	63585	2025-06-04	2025-02-27	3.4	3.63	3.49	3.6	0.011	1.21	1.0	0.07	10.75	0.01	2.284	2.76	0.00	7.0	92.7	0.2	-6.52	0.59	0.79	4.05	3.6	0.003	0.62	0.0	0.04	14.35	0.00	2.565	3.05	3.93	4.7	95.3	0.0	-2.62	0.56	0.57	0.79	1.86	3453	431	2	0	1	0	0	logfile
✔	9NJR	49488	2025-06-12	2025-02-27	2.7	3.40	2.80	3.3	0.004	0.65	0.0	0.05	14.45	0.00	2.014	13.45	0.20	2.8	97.2	0.0	-0.15	0.66	0.77	2.13	3.3	0.003	0.65	0.0	0.04	16.60	0.00	1.966	9.63	2.63	1.9	98.1	0.0	0.51	0.96	0.63	0.77	1.92	13863	1776	9	0	6	0	0	logfile
✔	9Q96	52919	2025-06-17	2025-02-26	4.6	4.44	4.58	4.1	0.031	2.83	326.0	0.20	18.14	0.02	1.495	10.09	0.00	10.8	86.7	2.5	-4.05	0.81	0.71	—	4.2	0.008	1.15	0.0	0.05	18.55	0.01	2.411	9.58	0.00	20.5	78.2	1.3	-3.56	1.57	0.79	0.73	—	19633	3621	8	87	0	0	0	logfile
✔	9M1H	63571	2025-06-06	2025-02-26	2.55	2.99	2.64	2.9	0.010	0.89	3.0	0.07	10.11	0.01	2.162	6.35	1.62	3.7	96.3	0.0	-1.64	0.53	0.71	3.49	2.9	0.004	0.64	0.0	0.04	15.73	0.00	2.276	5.64	3.63	4.0	96.0	0.0	1.21	1.43	0.60	0.83	3.63	7055	910	5	0	1	1	0	logfile
✔	9Q97	52947	2025-06-23	2025-02-26	4.6	4.66	—	4.0	0.007	0.65	0.0	0.04	14.61	0.00	1.711	3.96	0.00	5.6	94.4	0.1	-0.62	0.84	0.67	—	4.0	0.007	0.91	0.0	0.05	16.27	0.00	1.110	9.61	0.00	16.4	83.5	0.0	-2.57	1.50	0.87	0.70	—	26819	5125	19	68	15	0	0	logfile
✔	9M0S	63562	2025-06-04	2025-02-25	3.5	3.73	3.47	3.7	0.010	1.18	0.0	0.07	13.21	0.01	2.279	5.66	0.00	3.3	96.7	0.0	-3.69	0.46	0.77	2.61	3.7	0.003	0.61	0.0	0.04	15.28	0.00	2.508	7.98	2.19	2.4	97.6	0.0	1.26	0.43	0.42	0.75	0.83	3413	424	2	0	1	0	0	logfile
✔	9NH8	49406	2025-06-16	2025-02-24	3.2	2.35	3.34	2.1	0.005	0.76	0.0	0.04	25.58	0.01	2.074	9.86	0.78	3.5	96.4	0.1	-0.75	0.72	0.70	1.74	2.1	0.003	0.59	0.0	0.03	25.48	0.00	2.225	7.50	1.40	3.0	97.0	0.0	1.28	0.92	0.76	0.78	1.80	18500	1493	13	312	0	0	0	logfile
✔	9M0D	63543	2025-06-05	2025-02-24	3.41	3.65	3.38	3.6	0.005	0.66	0.0	0.04	12.64	0.01	2.064	6.57	0.58	6.0	94.0	0.0	-1.04	0.64	0.74	2.91	3.6	0.006	0.69	0.0	0.04	13.13	0.00	2.492	7.49	4.39	9.4	90.5	0.1	-0.36	0.92	0.66	0.79	2.75	6312	1044	4	0	0	0	0	logfile
✔	9iHC	52864	2025-06-04	2025-02-21	2.95	3.58	3.00	3.4	0.003	0.58	0.0	0.04	14.94	0.00	2.349	5.33	0.62	2.0	98.0	0.0	0.55	0.84	0.88	3.98	3.4	0.005	0.56	0.0	0.04	16.20	0.00	2.602	6.05	1.87	1.8	98.2	0.0	0.95	0.35	0.83	0.87	4.15	4288	560	3	0	0	0	0	logfile
✔	9LYP	63514	2025-06-05	2025-02-20	3.6	3.97	3.62	3.7	0.004	0.88	0.0	0.05	11.36	0.01	2.150	8.36	0.00	8.1	91.9	0.0	-0.89	0.82	0.76	2.48	3.7	0.003	0.74	0.0	0.04	14.07	0.00	2.427	8.04	2.21	6.5	93.5	0.0	-0.11	1.03	0.85	0.81	2.95	4882	635	4	0	2	0	0	logfile
✔	9LYD	63522	2025-06-05	2025-02-19	3.66	2.79	3.59	2.8	0.004	0.81	0.0	0.04	16.60	0.01	2.188	12.83	0.17	4.0	96.0	0.0	1.24	0.72	0.74	0.54	2.8	0.003	0.78	0.0	0.04	17.14	0.00	2.507	10.49	4.29	4.2	95.6	0.1	1.40	0.41	0.72	0.74	0.75	5636	746	2	0	0	0	0	logfile
✔	9LYC	63523	2025-06-08	2025-02-19	3.06	2.38	3.19	2.1	0.004	0.68	0.0	0.04	15.52	0.01	2.034	12.59	0.75	3.8	96.2	0.0	0.99	0.73	0.74	1.64	2.1	0.003	0.67	0.0	0.04	16.86	0.00	2.453	9.11	3.84	4.1	95.9	0.0	1.11	0.66	0.75	0.78	1.70	10056	1312	6	0	0	0	0	logfile

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