Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JFZ	61445	2025-06-06	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.85	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.1	0.002	0.58	0.0	0.04	16.82	0.00	2.482	4.27	2.07	3.0	97.0	0.0	0.56	0.44	0.78	0.77	2.76	8198	1049	5	0	0	0	0	logfile
✔	9GoB	51496	2025-06-13	2024-09-05	3.2	4.17	3.23	3.5	0.008	0.73	0.0	0.05	13.18	0.01	1.947	4.96	0.00	3.9	96.1	0.0	-1.88	0.78	0.88	3.69	3.5	0.004	0.70	0.0	0.04	13.87	0.00	1.862	6.15	0.38	2.9	97.1	0.0	1.61	1.21	0.79	0.90	2.87	14814	1879	11	0	10	0	0	logfile
✔	9JFV	61441	2025-06-06	2024-09-05	2.67	2.24	2.67	1.8	0.005	0.84	2.0	0.05	16.64	0.00	2.199	16.88	0.83	5.4	94.2	0.4	-0.54	0.67	0.67	1.00	1.8	0.004	0.67	0.0	0.05	17.61	0.00	2.550	12.01	3.99	5.5	94.5	0.0	-0.11	1.26	0.67	0.67	1.58	7035	920	4	0	0	0	0	logfile
✔	9DiG	46905	2025-06-05	2024-09-05	3.22	3.49	3.26	4.0	0.007	0.76	0.0	0.03	25.27	0.00	2.126	19.21	0.00	0.0	0.0	0.0	—	0.83	0.83	—	4.0	0.008	0.77	0.0	0.04	24.78	0.00	2.121	19.04	0.00	0.0	0.0	0.0	—	0.95	0.83	0.85	—	4066	0	4	192	6	0	0	logfile
✔	9GoA	51495	2025-06-27	2024-09-05	3.2	3.17	—	3.0	0.004	0.71	0.0	0.04	13.30	0.00	2.068	9.73	0.00	3.7	96.3	0.0	0.46	0.68	0.63	1.40	3.0	0.004	0.73	0.0	0.04	15.60	0.00	2.290	11.47	2.10	3.7	96.3	0.0	0.59	1.44	0.71	0.71	1.56	31628	4320	4	0	0	0	0	logfile
✔	9DiJ	46907	2025-06-21	2024-09-05	4.07	4.30	4.18	4.3	0.002	0.50	0.0	0.04	14.42	0.00	2.261	7.09	0.37	9.5	90.5	0.0	-1.65	0.59	0.68	—	4.4	0.003	0.67	0.0	0.04	14.57	0.00	2.516	12.25	0.04	9.4	90.5	0.1	-1.10	1.27	0.58	0.70	—	24540	3015	5	0	0	0	0	logfile
✔	9DiR	46916	2025-06-05	2024-09-05	2.97	3.27	3.04	3.3	0.004	0.58	0.0	0.04	12.37	0.00	2.124	10.18	0.00	3.3	96.7	0.0	0.24	0.37	0.56	1.55	3.3	0.004	0.63	0.0	0.04	16.29	0.00	2.531	10.01	3.53	2.9	97.1	0.0	-0.60	1.29	0.48	0.72	3.07	5889	756	2	0	0	0	0	logfile
✔	9DiL	46912	2025-06-08	2024-09-05	3.3	3.74	3.09	3.5	0.003	0.52	0.0	0.04	10.16	0.00	2.211	4.20	1.55	3.8	96.2	0.0	2.06	0.69	0.88	2.33	3.5	0.003	0.63	0.0	0.04	13.80	0.00	2.484	4.71	1.26	3.8	96.1	0.1	2.04	0.61	0.68	0.89	2.03	9783	1236	5	0	4	0	0	logfile
✔	9DHT	46876	2025-06-16	2024-09-04	4.31	4.40	4.35	4.3	0.003	0.66	0.0	0.04	12.37	0.01	2.147	2.94	0.31	5.4	94.3	0.3	-0.97	0.71	0.73	—	4.3	0.003	0.69	0.0	0.04	12.92	0.00	2.403	7.63	0.00	3.4	96.3	0.3	0.71	1.79	0.73	0.76	—	18294	2350	12	0	0	0	0	logfile
✔	9DHY	46892	2025-06-23	2024-09-04	2.7	3.37	2.73	3.1	0.014	1.06	0.0	0.07	10.27	0.00	2.223	6.66	2.05	1.7	98.3	0.0	1.07	0.80	0.85	3.18	3.1	0.003	0.64	0.0	0.04	13.11	0.00	2.445	5.99	1.65	2.8	97.2	0.0	0.92	1.23	0.79	0.84	2.84	27227	3427	21	0	39	0	0	logfile
✔	9DHR	46874	2025-06-16	2024-09-04	3.54	3.79	3.73	3.7	0.014	0.84	0.0	0.05	12.24	0.01	2.101	3.11	0.72	4.6	95.0	0.3	-1.61	0.69	0.79	2.48	3.7	0.003	0.70	0.0	0.04	15.12	0.00	2.512	5.39	2.61	2.7	97.2	0.1	1.11	1.41	0.73	0.83	2.35	18298	2350	12	0	0	0	0	logfile
✔	9DHS	46875	2025-06-16	2024-09-04	4.48	4.57	4.51	4.5	0.003	0.71	0.0	0.04	12.44	0.01	2.118	3.11	0.20	5.8	93.5	0.7	-1.38	0.68	0.70	—	4.5	0.003	0.69	0.0	0.04	13.39	0.00	2.344	8.55	0.00	4.4	95.3	0.3	0.58	1.34	0.73	0.76	—	18294	2350	12	0	0	0	0	logfile
✔	9DHP	46872	2025-06-16	2024-09-04	4.18	4.33	4.27	4.3	0.003	0.67	0.0	0.04	12.42	0.01	2.218	3.18	0.16	5.8	94.0	0.2	-1.48	0.73	0.80	—	4.3	0.003	0.68	0.0	0.04	13.38	0.00	2.462	5.11	0.00	4.0	96.0	0.0	0.81	1.29	0.74	0.79	—	18069	2328	8	0	0	0	0	logfile
✔	9Go3	51489	2025-06-11	2024-09-04	3.15	4.71	2.83	3.1	0.003	0.54	0.0	0.04	15.18	0.00	2.215	5.47	0.38	1.5	98.2	0.3	2.64	0.68	0.70	2.22	3.1	0.004	0.61	0.0	0.04	15.02	0.00	2.432	8.01	1.24	2.3	97.4	0.3	3.06	1.44	0.74	0.87	2.48	12187	1771	7	0	0	0	0	logfile
✔	9JF8	61430	2025-06-04	2024-09-04	3.05	3.21	2.98	3.2	0.005	1.05	2.0	0.07	13.51	0.01	1.759	3.98	0.00	8.7	91.3	0.0	-6.51	0.54	0.82	3.74	3.2	0.004	0.76	0.0	0.04	15.88	0.00	2.477	3.36	3.16	9.2	90.8	0.0	-0.48	0.96	0.52	0.82	3.51	3266	395	2	0	1	0	0	logfile
✔	9Go5	51491	2025-06-13	2024-09-04	2.5	2.73	2.46	2.6	0.004	0.71	0.0	0.05	19.45	0.01	2.037	3.04	2.10	1.6	98.4	0.0	0.07	0.75	0.90	3.99	2.6	0.003	0.60	0.0	0.05	18.34	0.00	1.931	5.46	2.10	1.1	98.9	0.0	1.98	0.89	0.74	0.91	3.81	14930	1850	15	0	10	350	0	logfile
✔	9DHQ	46873	2025-06-16	2024-09-04	4.78	4.82	4.75	4.7	0.003	0.88	0.0	0.04	12.68	0.01	2.205	3.56	0.16	6.7	92.7	0.6	-2.09	0.71	0.76	—	4.7	0.003	0.71	0.0	0.04	13.39	0.00	2.531	8.09	0.00	3.8	96.0	0.2	-0.24	1.62	0.73	0.78	—	18069	2328	8	0	0	0	0	logfile
✔	9DHD	46867	2025-06-09	2024-09-03	2.9	3.41	2.99	3.2	0.006	0.69	0.0	0.05	16.29	0.00	2.433	8.70	1.88	2.9	97.1	0.0	-0.84	0.81	0.86	3.56	3.2	0.006	0.66	0.0	0.05	16.59	0.00	2.481	8.00	2.33	2.8	97.2	0.0	-0.44	0.30	0.81	0.86	3.22	10063	1259	3	0	0	0	0	logfile
✔	9DH8	46859	2025-06-19	2024-09-03	3.5	3.83	3.62	3.7	0.004	0.66	0.0	0.04	14.59	0.00	2.108	11.31	0.00	2.7	97.3	0.0	1.36	0.77	0.77	1.72	3.8	0.003	0.63	0.0	0.04	16.46	0.00	2.476	10.47	1.66	2.2	97.8	0.0	1.68	0.78	0.78	0.79	1.17	21847	2709	2	0	4	0	0	logfile
✔	9DH7	46858	2025-06-20	2024-09-03	3.4	3.75	3.62	3.7	0.004	0.63	0.0	0.04	14.47	0.00	1.891	6.99	0.04	1.4	98.6	0.0	2.13	0.72	0.77	1.94	3.7	0.002	0.58	0.0	0.04	16.53	0.00	1.990	6.60	1.11	1.5	98.5	0.0	2.43	0.82	0.75	0.85	1.94	23020	2857	2	0	5	0	0	logfile

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