Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DH5	46856	2025-06-20	2024-09-03	2.6	2.92	2.75	2.9	0.004	0.62	0.0	0.04	14.20	0.01	1.745	6.54	0.00	1.5	98.4	0.1	1.58	0.73	0.81	3.51	2.9	0.004	0.58	0.0	0.04	16.88	0.00	1.974	5.74	2.00	1.3	98.7	0.0	2.09	0.66	0.69	0.85	3.41	23689	2935	2	0	6	0	0	logfile
✔	9DH9	46860	2025-06-20	2024-09-03	3.4	3.46	3.32	3.5	0.005	0.83	0.0	0.05	15.96	0.01	1.955	14.42	0.24	3.2	96.7	0.0	0.80	0.75	0.83	1.82	3.5	0.003	0.61	0.0	0.04	17.57	0.00	1.924	8.35	2.08	2.8	97.1	0.1	1.69	0.44	0.77	0.87	1.82	23113	2858	2	0	7	0	0	logfile
✔	9DHD	46867	2025-06-09	2024-09-03	2.9	3.41	2.99	3.2	0.006	0.69	0.0	0.05	16.29	0.00	2.433	8.70	1.88	2.9	97.1	0.0	-0.84	0.81	0.86	3.56	3.2	0.006	0.66	0.0	0.05	16.59	0.00	2.481	8.00	2.33	2.8	97.2	0.0	-0.44	0.30	0.81	0.86	3.22	10063	1259	3	0	0	0	0	logfile
✔	9GNQ	51477	2025-06-08	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.18	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.004	0.65	0.0	0.05	16.00	0.00	1.988	4.64	1.09	2.8	97.2	0.0	1.24	2.02	0.71	0.89	3.46	9309	1166	7	1	4	0	0	logfile
✔	9DH7	46858	2025-06-20	2024-09-03	3.4	3.75	3.62	3.7	0.004	0.63	0.0	0.04	14.47	0.00	1.891	6.99	0.04	1.4	98.6	0.0	2.13	0.72	0.77	1.94	3.7	0.002	0.58	0.0	0.04	16.53	0.00	1.990	6.60	1.11	1.5	98.5	0.0	2.43	0.82	0.75	0.85	1.94	23020	2857	2	0	5	0	0	logfile
✔	9DGi	46828	2025-06-04	2024-09-02	3.35	3.68	3.43	3.7	0.008	1.48	0.0	0.07	13.49	0.01	2.462	1.47	0.99	10.1	89.5	0.4	-8.28	0.46	0.77	2.93	3.7	0.003	0.77	0.0	0.04	13.80	0.01	2.550	1.96	2.46	5.4	94.6	0.0	-4.71	0.58	0.46	0.77	2.92	2048	265	2	0	1	0	0	logfile
✔	9DGG	46823	2025-06-11	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.68	0.0	0.04	27.35	0.00	2.516	9.54	2.18	3.2	96.8	0.0	2.51	0.57	0.90	0.89	2.33	13339	959	14	286	4	0	0	logfile
✔	9JE0	61403	2025-06-04	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.70	0.0	0.04	15.99	0.00	2.607	8.81	2.03	2.6	97.4	0.0	2.02	0.63	0.44	0.71	1.00	3321	435	2	0	1	1	0	logfile
✔	9DG3	46822	2025-06-11	2024-09-01	3.46	4.35	3.61	3.6	0.005	0.79	0.0	0.05	28.10	0.01	2.182	9.07	0.15	2.6	97.4	0.0	1.39	0.92	0.86	1.88	3.6	0.005	0.66	0.0	0.04	27.86	0.00	2.110	11.60	1.82	3.5	96.5	0.0	2.02	0.46	0.92	0.88	1.64	12553	860	13	292	1	0	0	logfile
✔	9JDR	61397	2025-06-04	2024-09-01	3.5	3.86	3.66	4.0	0.008	1.25	5.0	0.06	11.08	0.01	2.246	4.31	0.29	7.2	92.8	0.0	-6.89	0.54	0.73	3.36	4.0	0.002	0.63	0.0	0.04	14.58	0.00	2.608	5.64	1.14	4.5	95.5	0.0	-2.65	0.64	0.52	0.72	2.03	3371	422	1	0	0	0	0	logfile
✔	9JDV	61399	2025-06-04	2024-09-01	3.32	3.91	3.55	3.9	0.013	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.004	0.74	0.0	0.04	16.35	0.00	2.281	10.48	4.06	2.6	97.4	0.0	1.92	1.08	0.48	0.73	1.28	3311	435	2	0	1	1	0	logfile
✔	9JDB	61387	2025-06-05	2024-08-31	2.64	2.91	2.73	2.9	0.008	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.66	0.0	0.04	17.75	0.00	2.608	3.80	1.27	1.6	98.4	0.0	0.36	0.20	0.70	0.86	3.95	6592	808	4	0	2	0	0	logfile
✔	9JCV	61377	2025-06-04	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.003	0.68	0.0	0.04	15.40	0.00	2.618	9.76	0.69	2.0	98.0	0.0	1.15	1.04	0.51	0.74	0.67	4111	512	2	0	4	0	0	logfile
✔	9JCZ	61378	2025-06-04	2024-08-30	2.64	3.06	2.79	3.0	0.004	0.75	0.0	0.04	14.87	0.00	1.897	5.83	0.00	2.9	97.1	0.0	0.88	0.57	0.74	2.43	3.0	0.002	0.62	0.0	0.04	14.45	0.00	2.310	6.29	0.45	2.3	97.7	0.0	1.32	0.42	0.51	0.72	1.46	4364	525	2	0	11	2	0	logfile
✔	9GMZ	51458	2025-06-18	2024-08-30	3.2	3.86	3.43	3.6	0.003	0.64	0.0	0.05	17.08	0.00	1.922	8.94	1.38	2.9	97.1	0.0	1.67	0.83	0.84	2.12	3.6	0.002	0.54	0.0	0.04	17.58	0.00	1.903	7.31	2.05	2.6	97.4	0.0	1.90	1.03	0.84	0.86	2.17	20472	2433	22	32	14	0	0	logfile
✔	9DEZ	46804	2025-06-23	2024-08-29	2.6	3.39	2.82	3.1	0.006	0.94	0.0	0.06	16.50	0.01	2.414	0.54	1.03	2.6	97.2	0.2	-0.38	0.82	0.88	5.02	3.1	0.007	0.67	0.0	0.05	12.26	0.00	2.454	2.31	1.12	2.8	97.2	0.0	0.93	0.42	0.81	0.90	4.08	27135	3543	45	0	126	0	0	logfile
✔	9GMW	51456	2025-06-12	2024-08-29	3.0	3.07	2.91	3.1	0.004	0.63	0.0	0.04	16.81	0.00	1.874	4.69	0.34	2.3	97.7	0.0	0.76	0.69	0.85	3.66	3.1	0.003	0.59	0.0	0.04	17.79	0.00	1.985	6.22	1.83	2.3	97.7	0.0	1.07	0.86	0.71	0.86	3.27	14541	1654	6	56	9	0	0	logfile
✔	9GMK	51449	2025-06-12	2024-08-29	3.5	4.09	3.74	3.7	0.004	0.74	0.0	0.04	26.23	0.00	2.126	21.60	0.33	2.0	98.0	0.0	0.41	0.73	0.64	0.36	3.8	0.006	0.77	0.0	0.04	27.80	0.01	2.055	18.82	3.65	2.5	97.5	0.0	0.95	1.62	0.80	0.80	0.51	14643	1081	11	296	0	0	0	logfile
✔	9GMX	51457	2025-06-12	2024-08-29	2.82	2.87	2.73	2.9	0.007	0.71	1.0	0.05	16.92	0.01	1.888	4.13	0.54	3.2	96.8	0.0	0.15	0.70	0.86	3.74	2.9	0.003	0.56	0.0	0.04	17.78	0.00	2.050	5.98	1.49	2.1	97.9	0.0	1.02	2.34	0.72	0.87	2.77	14540	1654	7	56	8	0	0	logfile
✔	9DER	46794	2025-06-13	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.59	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.003	0.66	0.0	0.05	11.81	0.00	1.773	9.84	0.77	6.0	94.0	0.0	-0.78	1.78	0.88	0.76	0.09	14207	925	9	0	24	2	6843	logfile

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