Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GA3	51170	2025-06-16	2024-07-26	4.3	8.47	4.38	4.2	0.004	0.72	0.0	0.04	19.76	0.01	2.224	15.69	1.97	8.4	91.6	0.0	-1.90	0.90	0.78	—	4.3	0.004	0.74	0.0	0.04	18.61	0.01	2.405	25.44	0.00	7.4	92.6	0.0	-1.09	1.18	0.90	0.78	—	18691	2207	7	79	7	0	0	logfile
✔	9CU4	45927	2025-06-13	2024-07-25	3.3	3.96	3.35	3.8	0.013	1.85	3.0	0.10	13.50	0.03	1.559	5.78	0.76	4.1	95.9	0.0	-1.06	0.85	0.85	3.79	3.8	0.003	0.64	0.0	0.05	13.40	0.00	2.490	2.84	0.63	2.2	97.8	0.0	-0.25	1.04	0.81	0.84	3.07	14688	1755	12	0	54	0	0	logfile
✔	9CU5	45928	2025-06-20	2024-07-25	3.4	3.88	3.48	3.8	0.008	1.13	0.0	0.06	14.73	0.01	1.903	4.16	0.12	6.5	93.5	0.0	-1.07	0.66	0.78	2.24	3.8	0.006	0.98	2.0	0.05	14.86	0.01	2.272	11.32	3.04	4.9	95.1	0.0	-0.51	0.50	0.68	0.80	2.49	23538	2860	26	0	78	0	0	logfile
✔	9G9D	51148	2025-06-18	2024-07-25	2.9	3.15	3.01	3.2	0.007	0.99	0.0	0.09	15.18	0.01	2.123	10.02	2.03	1.9	98.1	0.0	0.87	0.63	0.78	2.58	3.1	0.005	0.67	0.0	0.04	17.94	0.00	2.410	10.54	2.86	3.2	96.8	0.0	0.54	0.63	0.64	0.79	2.62	21333	2484	12	73	0	0	0	logfile
✔	9CTT	45918	2025-06-13	2024-07-25	2.5	2.88	2.59	2.8	0.003	0.56	0.0	0.04	16.17	0.00	2.059	8.28	1.53	1.7	98.3	0.1	1.23	0.66	0.89	3.72	2.8	0.003	0.51	0.0	0.04	16.55	0.00	2.300	6.48	1.89	1.7	98.2	0.1	1.20	0.21	0.66	0.88	3.66	15595	1880	10	0	5	0	0	logfile
✔	9G9X	51160	2025-06-04	2024-07-25	3.13	3.60	3.08	3.5	0.007	0.75	0.0	0.05	11.30	0.01	2.404	1.01	0.00	0.8	99.2	0.0	-1.06	0.49	0.78	4.25	3.5	0.003	0.51	0.0	0.04	13.14	0.00	2.598	1.77	1.03	2.9	97.1	0.0	4.28	0.94	0.46	0.75	2.58	3955	488	4	0	7	0	0	logfile
✔	9CTF	45904	2025-06-08	2024-07-25	3.9	3.87	3.93	4.0	0.002	0.49	0.0	0.04	15.18	0.00	2.210	9.47	0.52	2.5	97.4	0.1	1.77	0.61	0.75	0.89	4.0	0.003	0.62	0.0	0.04	14.92	0.00	2.422	10.04	2.40	3.3	96.7	0.0	1.61	0.60	0.64	0.77	1.21	9398	1158	2	0	24	0	0	logfile
✔	9CTJ	45908	2025-06-12	2024-07-25	3.74	4.08	3.88	4.1	0.007	1.09	0.0	0.07	15.10	0.02	2.091	8.09	1.84	5.9	94.1	0.0	-2.75	0.63	0.75	2.49	4.1	0.004	0.77	0.0	0.05	15.72	0.00	2.520	10.91	2.99	3.7	96.3	0.0	-0.24	1.35	0.66	0.80	2.19	14465	1755	14	0	18	0	0	logfile
✔	9CTG	45906	2025-06-08	2024-07-25	3.4	3.21	3.42	3.5	0.004	0.60	0.0	0.04	16.15	0.00	1.927	7.52	0.11	3.0	97.0	0.0	0.52	0.62	0.80	1.92	3.5	0.005	0.90	0.0	0.04	17.32	0.00	1.627	7.68	2.54	3.6	96.4	0.0	0.87	0.49	0.64	0.82	2.00	9128	1157	2	0	13	0	0	logfile
✔	9iW3	60944	2025-06-05	2024-07-25	3.58	4.09	3.62	3.8	0.005	0.91	2.0	0.06	23.44	0.00	1.930	22.54	2.34	6.8	92.8	0.4	-0.43	0.83	0.77	2.86	3.9	0.003	0.65	0.0	0.04	23.29	0.00	1.957	9.51	1.09	5.9	93.7	0.4	0.46	1.13	0.84	0.83	2.78	6879	712	5	51	1	0	0	logfile
✔	9CTM	45911	2025-06-22	2024-07-25	2.92	3.28	3.04	3.3	0.003	0.55	0.0	0.05	17.01	0.00	2.078	7.16	0.42	3.5	96.5	0.0	0.33	0.62	0.74	1.99	3.2	0.003	0.61	0.0	0.06	17.12	0.00	2.241	4.84	1.88	4.7	95.3	0.0	0.16	0.67	0.65	0.82	3.55	26266	1724	2	0	0	0	13032	logfile
✔	9G9V	51158	2025-06-04	2024-07-25	3.32	3.86	3.31	3.7	0.007	0.75	0.0	0.05	11.17	0.00	2.245	1.73	0.53	1.5	98.5	0.0	-0.06	0.48	0.77	4.24	3.7	0.003	0.59	0.0	0.04	12.85	0.00	2.601	2.35	1.58	1.0	99.0	0.0	4.08	1.01	0.50	0.78	3.08	4073	522	4	0	9	0	0	logfile
✔	9G9W	51159	2025-06-04	2024-07-25	2.48	3.01	2.48	3.0	0.007	0.72	0.0	0.05	11.38	0.01	2.295	1.11	0.00	0.4	99.6	0.0	0.55	0.47	0.78	5.21	3.0	0.005	0.53	0.0	0.04	13.57	0.00	2.650	2.72	0.00	1.2	98.8	0.0	4.49	0.89	0.49	0.80	3.15	4089	516	4	0	9	0	0	logfile
✔	9iVQ	60932	2025-06-17	2024-07-24	2.66	3.45	2.72	3.2	0.006	0.89	1.0	0.06	15.70	0.00	2.182	10.55	2.23	5.4	94.6	0.0	1.10	0.79	0.87	4.06	3.2	0.004	0.76	0.0	0.05	17.03	0.00	2.421	9.91	4.54	4.9	95.1	0.0	1.59	0.47	0.78	0.87	3.97	19758	2460	24	0	0	0	0	logfile
✔	9iVW	60935	2025-06-06	2024-07-24	3.79	3.02	3.71	2.8	0.007	1.06	0.0	0.05	19.24	0.01	2.268	12.73	3.74	5.1	94.9	0.0	-0.40	0.52	0.71	0.70	2.6	0.004	0.84	0.0	0.05	19.72	0.00	2.408	12.30	5.61	4.9	95.1	0.0	0.40	1.49	0.53	0.73	0.54	6852	849	2	0	0	0	0	logfile
✔	9iVS	60934	2025-06-17	2024-07-24	2.97	3.77	3.06	3.5	0.006	0.96	2.0	0.06	16.30	0.00	2.156	18.91	3.01	6.1	93.9	0.0	0.63	0.82	0.81	2.62	3.5	0.004	0.83	0.0	0.05	17.42	0.00	2.394	14.03	4.40	5.0	95.0	0.0	0.95	0.93	0.82	0.81	2.62	19758	2460	24	0	0	0	0	logfile
✔	9CT3	45897	2025-06-08	2024-07-24	3.09	3.28	3.11	3.3	0.006	0.76	0.0	0.04	14.49	0.00	2.209	7.81	0.00	1.7	98.3	0.0	2.20	0.57	0.83	3.35	3.3	0.003	0.52	0.0	0.04	16.02	0.00	2.618	6.92	1.13	2.0	98.0	0.0	2.30	0.77	0.57	0.84	2.93	10138	1266	8	0	6	0	0	logfile
✔	9iVR	60933	2025-06-17	2024-07-24	2.8	3.57	2.94	3.3	0.005	0.92	1.0	0.06	16.13	0.00	2.198	12.12	1.53	5.2	94.8	0.0	1.18	0.77	0.79	3.11	3.3	0.007	1.05	2.0	0.05	17.31	0.00	2.007	14.91	3.62	4.2	95.8	0.0	1.49	0.52	0.78	0.81	3.31	19758	2460	24	0	0	0	0	logfile
✔	9iVA	60923	2025-06-11	2024-07-23	2.52	3.20	2.54	3.0	0.004	0.67	0.0	0.05	13.05	0.01	2.529	3.45	0.00	3.3	96.7	0.0	0.41	0.75	0.82	2.75	3.0	0.003	0.68	0.0	0.04	15.47	0.00	2.268	8.58	0.75	3.6	96.4	0.0	1.72	1.01	0.73	0.80	2.69	12944	1611	6	0	2	0	0	logfile
✔	9G8B	51127	2025-06-15	2024-07-23	3.5	3.76	3.53	3.7	0.018	1.49	0.0	0.08	8.25	0.01	2.304	3.20	0.00	0.3	99.7	0.0	1.59	0.76	0.83	3.48	3.7	0.006	1.01	3.0	0.05	11.85	0.00	2.390	2.96	3.63	2.4	97.6	0.0	0.76	1.21	0.77	0.86	3.84	17346	2415	7	0	0	0	0	logfile

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