Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iVK	60929	2025-06-05	2024-07-23	2.74	3.03	2.77	3.0	0.006	0.87	0.0	0.06	14.94	0.00	2.231	9.92	0.69	2.0	98.0	0.0	1.92	0.59	0.74	2.64	3.0	0.003	0.56	0.0	0.04	17.19	0.00	2.471	6.38	1.61	1.8	98.2	0.0	2.84	1.25	0.61	0.79	2.35	4077	507	4	0	1	0	0	logfile
✔	9G8N	51133	2025-06-29	2024-07-23	3.7	4.09	3.59	3.2	0.003	0.80	0.0	0.05	15.59	0.01	2.088	10.95	0.00	4.0	96.0	0.0	-3.04	0.85	0.80	1.66	3.2	0.003	0.64	0.0	0.04	16.63	0.00	2.439	6.36	0.93	6.2	93.7	0.0	-0.56	0.95	0.86	0.82	1.49	34405	4304	13	44	0	0	0	logfile
✔	9iVA	60923	2025-06-11	2024-07-23	2.52	3.20	2.54	3.0	0.004	0.67	0.0	0.05	13.05	0.01	2.529	3.45	0.00	3.3	96.7	0.0	0.41	0.75	0.82	2.75	3.0	0.003	0.68	0.0	0.04	15.47	0.00	2.268	8.58	0.75	3.6	96.4	0.0	1.72	1.01	0.73	0.80	2.69	12944	1611	6	0	2	0	0	logfile
✔	9G8B	51127	2025-06-15	2024-07-23	3.5	3.76	3.53	3.7	0.018	1.49	0.0	0.08	8.25	0.01	2.304	3.20	0.00	0.3	99.7	0.0	1.59	0.76	0.83	3.48	3.7	0.006	1.01	3.0	0.05	11.85	0.00	2.390	2.96	3.63	2.4	97.6	0.0	0.76	1.21	0.77	0.86	3.84	17346	2415	7	0	0	0	0	logfile
✔	9iVD	60925	2025-06-07	2024-07-23	3.55	4.42	3.48	4.1	0.004	0.72	0.0	0.05	16.74	0.01	2.128	8.14	0.23	11.1	88.4	0.4	-3.72	0.88	0.85	2.89	4.1	0.004	0.67	0.0	0.05	17.06	0.00	2.496	5.78	3.01	12.7	86.9	0.4	-2.89	0.91	0.88	0.85	2.93	8628	1160	3	0	0	0	0	logfile
✔	9iV2	60918	2025-06-05	2024-07-22	3.53	4.14	3.44	3.9	0.002	0.54	0.0	0.04	17.47	0.00	2.186	8.42	0.00	5.1	94.9	0.0	-0.13	0.71	0.84	0.91	3.9	0.003	0.55	0.0	0.04	17.62	0.00	2.546	6.22	4.47	5.3	94.7	0.0	-0.27	0.26	0.71	0.84	0.87	6732	892	5	0	1	0	0	logfile
✔	9iV1	60917	2025-06-06	2024-07-22	2.98	2.31	3.06	2.1	0.007	0.89	1.0	0.05	16.44	0.00	2.181	13.35	4.62	7.5	91.7	0.8	-1.29	0.79	0.80	2.60	2.1	0.004	0.72	0.0	0.04	16.35	0.00	2.484	8.59	4.38	7.9	92.0	0.1	-0.78	0.37	0.79	0.80	2.36	8284	1109	6	0	1	0	0	logfile
✔	9iUU	60914	2025-06-05	2024-07-22	3.29	3.45	3.35	3.5	0.006	0.86	1.0	0.05	16.62	0.01	2.254	9.61	0.86	4.6	95.4	0.0	-0.39	0.67	0.85	2.48	3.5	0.003	0.58	0.0	0.04	16.44	0.00	2.471	6.85	3.31	3.4	96.6	0.0	0.32	1.19	0.64	0.84	2.17	6513	791	4	0	8	0	0	logfile
✔	9iUP	60911	2025-06-05	2024-07-22	3.3	3.49	3.27	3.5	0.005	0.74	3.0	0.05	16.87	0.00	2.136	8.46	0.14	3.1	96.9	0.0	0.54	0.66	0.83	2.40	3.5	0.003	0.56	0.0	0.04	17.28	0.00	2.477	6.46	2.75	3.1	96.9	0.0	0.62	0.24	0.67	0.85	2.01	6420	787	3	0	2	0	0	logfile
✔	9iUQ	60912	2025-06-05	2024-07-22	3.3	3.52	3.23	3.5	0.006	0.84	2.0	0.05	18.19	0.01	2.253	6.40	0.72	3.2	96.8	0.0	0.27	0.66	0.83	2.01	3.5	0.003	0.59	0.0	0.04	18.28	0.00	2.454	6.48	3.19	3.1	96.9	0.0	0.92	1.26	0.66	0.87	1.94	6399	784	3	0	2	0	0	logfile
✔	9iUZ	60916	2025-06-06	2024-07-22	3.19	3.81	3.33	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.60	0.0	0.04	18.16	0.00	2.485	5.59	2.22	3.5	96.5	0.0	1.45	0.93	0.75	0.82	1.51	8349	1061	5	0	2	0	0	logfile
✔	9CRA	45856	2025-06-08	2024-07-21	2.34	2.18	2.35	2.0	0.003	0.60	0.0	0.05	12.61	0.01	2.203	10.41	0.00	7.6	92.4	0.0	-0.84	0.82	0.82	3.02	2.0	0.003	0.61	0.0	0.05	15.40	0.01	2.506	7.06	2.48	7.1	92.9	0.0	-0.51	0.38	0.83	0.83	2.23	9842	1247	8	0	4	0	0	logfile
✔	9CR8	45854	2025-06-07	2024-07-21	3.8	3.66	3.65	3.7	0.003	0.49	0.0	0.04	12.79	0.00	2.219	7.50	0.22	6.6	93.4	0.0	0.48	0.63	0.77	1.73	3.7	0.003	0.56	0.0	0.04	15.27	0.00	2.515	6.71	3.25	6.3	93.7	0.0	1.12	0.47	0.66	0.77	1.42	8664	1087	2	0	15	0	0	logfile
✔	9iUC	60897	2025-06-09	2024-07-20	3.8	4.02	3.81	4.1	0.003	0.76	0.0	0.35	21.29	0.00	2.247	11.91	0.10	3.3	96.7	0.0	-0.05	0.55	0.78	1.19	4.1	0.003	0.67	0.0	0.04	18.21	0.00	2.497	9.78	1.38	3.0	97.0	0.0	0.74	0.55	0.58	0.77	1.07	10360	1140	4	0	26	0	0	logfile
✔	9iTQ	60875	2025-06-08	2024-07-20	3.98	4.54	3.95	4.2	0.010	0.66	0.0	0.04	15.13	0.00	2.128	12.34	0.50	4.5	95.5	0.0	0.87	0.58	0.75	0.43	4.2	0.005	0.91	0.0	0.05	16.24	0.00	2.487	25.22	5.95	4.7	95.3	0.0	0.58	0.73	0.59	0.77	-0.30	9411	1361	16	0	0	0	0	logfile
✔	9iTY	60883	2025-06-09	2024-07-20	4.95	7.92	5.93	6.7	0.002	0.48	0.0	0.04	10.21	0.00	2.223	11.36	0.00	4.3	95.7	0.0	1.81	0.66	0.44	—	6.5	0.005	0.67	0.0	0.04	10.04	0.01	2.431	22.57	0.00	6.2	93.8	0.0	1.46	0.70	0.68	0.57	—	10477	1807	16	0	0	0	0	logfile
✔	9iTV	60880	2025-06-09	2024-07-20	3.97	4.53	3.85	4.1	0.004	0.74	0.0	0.04	15.89	0.00	2.277	12.07	0.10	3.7	96.3	0.0	2.12	0.61	0.72	-0.05	4.1	0.004	0.97	0.0	0.05	16.65	0.01	2.488	24.89	2.77	3.8	96.2	0.0	0.26	1.32	0.63	0.73	-0.30	10419	1424	16	0	0	0	0	logfile
✔	9CR4	45832	2025-06-08	2024-07-20	2.81	2.35	2.85	2.1	0.003	0.56	0.0	0.05	9.52	0.00	2.190	7.48	0.00	7.7	92.3	0.0	-0.39	0.75	0.75	2.65	2.2	0.003	0.66	0.0	0.05	14.44	0.01	2.321	9.83	3.11	7.5	92.5	0.0	0.10	0.56	0.75	0.75	2.18	9099	1179	4	0	0	0	0	logfile
✔	9iTX	60882	2025-06-07	2024-07-20	4.1	5.56	4.24	4.6	0.003	0.55	0.0	0.04	11.86	0.00	2.245	9.77	0.00	3.8	96.2	0.0	2.91	0.59	0.70	—	4.6	0.005	0.70	0.0	0.05	12.01	0.01	2.361	18.62	0.00	4.7	95.3	0.0	1.59	0.92	0.61	0.72	—	9081	1368	16	0	0	0	0	logfile
✔	9iTR	60876	2025-06-11	2024-07-20	4.6	7.03	4.69	6.5	0.005	0.75	0.0	0.05	13.78	0.00	2.223	15.36	0.00	4.7	95.3	0.0	-0.27	0.68	0.74	—	6.5	0.004	0.75	0.0	0.05	13.26	0.00	2.309	21.83	0.00	4.0	96.0	0.0	0.32	1.07	0.68	0.75	—	13036	1818	16	0	0	0	0	logfile

• ← previous
• Page 35 of 660
• next →