Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CR4	45832	2025-06-08	2024-07-20	2.81	2.35	2.85	2.1	0.003	0.56	0.0	0.05	9.52	0.00	2.190	7.48	0.00	7.7	92.3	0.0	-0.39	0.75	0.75	2.65	2.2	0.003	0.66	0.0	0.05	14.44	0.01	2.321	9.83	3.11	7.5	92.5	0.0	0.10	0.56	0.75	0.75	2.18	9099	1179	4	0	0	0	0	logfile
✔	9iTM	60871	2025-06-09	2024-07-20	3.16	3.77	3.25	3.7	0.011	0.65	0.0	0.04	16.32	0.01	2.239	11.88	0.28	4.3	95.7	0.0	0.18	0.64	0.81	0.89	3.7	0.004	0.67	0.0	0.04	17.04	0.01	2.490	12.61	5.07	4.3	95.7	0.0	1.76	0.40	0.63	0.80	0.62	10692	1424	16	0	0	0	0	logfile
✔	9iTR	60876	2025-06-11	2024-07-20	4.6	7.03	4.69	6.5	0.005	0.75	0.0	0.05	13.78	0.00	2.223	15.36	0.00	4.7	95.3	0.0	-0.27	0.68	0.74	—	6.5	0.004	0.75	0.0	0.05	13.26	0.00	2.309	21.83	0.00	4.0	96.0	0.0	0.32	1.07	0.68	0.75	—	13036	1818	16	0	0	0	0	logfile
✔	9iTV	60880	2025-06-09	2024-07-20	3.97	4.53	3.85	4.1	0.004	0.74	0.0	0.04	15.89	0.00	2.277	12.07	0.10	3.7	96.3	0.0	2.12	0.61	0.72	-0.05	4.1	0.004	0.97	0.0	0.05	16.65	0.01	2.488	24.89	2.77	3.8	96.2	0.0	0.26	1.32	0.63	0.73	-0.30	10419	1424	16	0	0	0	0	logfile
✔	9CR3	45831	2025-06-08	2024-07-20	3.18	2.56	3.18	2.2	0.003	0.62	0.0	0.05	11.75	0.00	2.045	10.49	0.00	6.0	94.0	0.0	-0.53	0.76	0.81	2.93	2.2	0.003	0.66	0.0	0.05	15.35	0.00	2.499	10.54	2.95	10.7	89.3	0.0	-0.26	0.94	0.76	0.81	2.54	9299	1200	4	0	0	0	0	logfile
✔	9G7F	51121	2025-06-08	2024-07-20	2.93	3.38	3.05	3.3	0.004	0.74	0.0	0.05	17.49	0.00	2.211	18.43	0.80	3.6	96.4	0.0	-0.38	0.74	0.75	1.43	3.3	0.003	0.71	0.0	0.05	18.06	0.00	2.568	15.06	3.98	3.4	96.6	0.0	-0.01	0.86	0.73	0.74	1.33	9647	1198	3	0	0	0	0	logfile
✔	9G79	51116	2025-06-06	2024-07-20	2.89	3.21	2.90	3.1	0.003	0.59	0.0	0.04	15.64	0.01	2.243	9.18	0.00	2.9	97.1	0.0	0.63	0.78	0.86	4.04	3.1	0.003	0.57	0.0	0.04	16.24	0.00	2.497	7.70	3.06	2.7	97.3	0.0	0.80	0.83	0.77	0.86	3.26	7232	898	2	0	0	0	0	logfile
✔	9iTY	60883	2025-06-09	2024-07-20	4.95	7.92	5.93	6.7	0.002	0.48	0.0	0.04	10.21	0.00	2.223	11.36	0.00	4.3	95.7	0.0	1.81	0.66	0.44	—	6.5	0.005	0.67	0.0	0.04	10.04	0.01	2.431	22.57	0.00	6.2	93.8	0.0	1.46	0.70	0.68	0.57	—	10477	1807	16	0	0	0	0	logfile
✔	9iTQ	60875	2025-06-08	2024-07-20	3.98	4.54	3.95	4.2	0.010	0.66	0.0	0.04	15.13	0.00	2.128	12.34	0.50	4.5	95.5	0.0	0.87	0.58	0.75	0.43	4.2	0.005	0.91	0.0	0.05	16.24	0.00	2.487	25.22	5.95	4.7	95.3	0.0	0.58	0.73	0.59	0.77	-0.30	9411	1361	16	0	0	0	0	logfile
✔	9CQM	45815	2025-06-05	2024-07-19	2.55	2.72	2.55	2.8	0.009	0.70	0.0	0.04	17.70	0.01	2.149	5.83	1.32	0.7	99.3	0.0	3.59	0.74	0.86	3.17	2.7	0.005	0.72	0.0	0.04	17.36	0.01	2.600	5.05	3.08	0.9	99.1	0.0	3.93	0.89	0.68	0.84	2.66	4790	568	12	0	8	290	0	logfile
✔	9CQU	45823	2025-06-05	2024-07-19	2.72	2.91	2.72	3.0	0.011	0.82	2.0	0.05	17.92	0.01	2.230	6.17	1.76	0.5	99.5	0.0	3.57	0.70	0.84	3.56	3.0	0.006	0.69	0.0	0.04	17.71	0.01	2.484	4.94	2.42	1.1	98.9	0.0	3.85	0.35	0.69	0.84	3.42	4707	568	12	0	6	211	0	logfile
✔	9CQT	45822	2025-06-05	2024-07-19	2.37	2.53	2.37	2.6	0.014	0.68	0.0	0.04	18.27	0.01	2.090	7.18	0.44	0.5	99.5	0.0	3.48	0.69	0.84	2.89	2.7	0.005	0.80	0.0	0.04	18.19	0.01	2.595	3.36	0.66	0.7	99.3	0.0	3.68	0.77	0.69	0.84	3.22	4790	568	12	0	8	290	0	logfile
✔	9CQN	45816	2025-06-05	2024-07-19	2.37	2.55	2.38	2.6	0.009	0.70	0.0	0.04	17.70	0.01	2.149	5.83	1.32	0.7	99.3	0.0	3.59	0.73	0.85	3.28	2.6	0.003	0.71	0.0	0.04	17.79	0.01	2.582	5.27	1.32	0.0	100.0	0.0	3.83	0.35	0.66	0.81	2.99	4790	568	12	0	8	290	0	logfile
✔	9CQP	45818	2025-06-04	2024-07-19	2.78	3.06	2.79	3.1	0.006	0.87	0.0	0.05	15.27	0.01	2.236	6.98	2.86	0.7	99.3	0.0	2.75	0.66	0.82	3.63	3.1	0.005	0.63	0.0	0.04	15.82	0.01	2.508	5.63	1.32	0.9	99.1	0.0	2.47	0.83	0.67	0.83	3.32	4470	566	8	0	4	0	0	logfile
✔	9CQ7	45810	2025-06-05	2024-07-19	3.21	3.47	3.19	3.5	0.003	0.62	0.0	0.05	14.05	0.00	2.131	12.25	0.00	5.8	94.2	0.0	-0.70	0.68	0.74	2.52	3.4	0.003	0.67	0.0	0.05	16.19	0.00	2.480	9.45	4.16	5.4	94.6	0.0	-1.08	1.01	0.67	0.77	2.45	5222	660	7	0	4	0	0	logfile
✔	9CQQ	45819	2025-06-04	2024-07-19	2.91	3.14	2.88	3.2	0.005	0.69	1.0	0.05	15.96	0.01	2.175	5.29	1.76	1.4	98.6	0.0	3.28	0.69	0.85	3.22	3.2	0.005	0.60	0.0	0.04	16.20	0.01	2.574	3.71	1.76	0.9	99.1	0.0	2.80	0.78	0.70	0.86	3.40	4470	566	8	0	4	0	0	logfile
✔	9CQV	45824	2025-06-04	2024-07-19	2.75	3.01	2.78	3.1	0.006	0.79	0.0	0.05	16.70	0.01	2.206	5.29	3.08	0.5	99.5	0.0	2.90	0.69	0.85	3.44	3.0	0.004	0.62	0.0	0.04	16.44	0.01	2.571	4.50	2.64	0.9	99.1	0.0	3.02	0.33	0.70	0.86	3.48	4470	566	8	0	4	0	0	logfile
✔	9G6V	51105	2025-06-18	2024-07-19	2.9	3.36	3.12	3.3	0.003	0.44	0.0	0.04	8.59	0.00	2.254	5.44	0.68	4.7	95.3	0.0	-0.91	0.73	0.81	3.64	3.3	0.003	0.55	0.0	0.04	13.78	0.00	2.284	6.24	1.78	5.2	94.8	0.0	-1.36	0.58	0.67	0.78	3.13	21815	2760	20	0	0	0	0	logfile
✔	9CQR	45820	2025-06-04	2024-07-19	2.7	2.92	2.70	3.0	0.006	0.84	0.0	0.05	16.04	0.01	2.258	5.29	2.64	1.4	98.6	0.0	3.05	0.66	0.83	4.35	3.0	0.004	0.62	0.0	0.04	16.65	0.01	2.608	4.50	2.20	1.6	98.4	0.0	2.53	0.26	0.67	0.84	4.21	4470	566	8	0	4	0	0	logfile
✔	9CQo	45817	2025-06-04	2024-07-19	3.01	3.27	3.01	3.3	0.007	0.84	0.0	0.05	15.65	0.01	2.218	5.63	2.86	1.1	98.9	0.0	3.00	0.69	0.84	3.03	3.3	0.004	0.58	0.0	0.04	15.48	0.01	2.533	3.04	2.86	1.4	98.6	0.0	3.16	0.81	0.68	0.83	3.31	4470	566	8	0	4	0	0	logfile

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