Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CQN	45816	2025-06-05	2024-07-19	2.37	2.55	2.38	2.6	0.009	0.70	0.0	0.04	17.70	0.01	2.149	5.83	1.32	0.7	99.3	0.0	3.59	0.73	0.85	3.28	2.6	0.003	0.71	0.0	0.04	17.79	0.01	2.582	5.27	1.32	0.0	100.0	0.0	3.83	0.35	0.66	0.81	2.99	4790	568	12	0	8	290	0	logfile
✔	9CQS	45821	2025-06-05	2024-07-19	2.52	2.71	2.55	2.8	0.013	0.71	0.0	0.05	17.31	0.01	2.103	6.73	0.88	0.5	99.5	0.0	3.54	0.69	0.84	3.58	2.8	0.003	0.74	0.0	0.04	17.35	0.01	2.620	4.26	1.98	0.5	99.5	0.0	4.02	0.81	0.68	0.84	3.13	4790	568	12	0	8	290	0	logfile
✔	9CQM	45815	2025-06-05	2024-07-19	2.55	2.72	2.55	2.8	0.009	0.70	0.0	0.04	17.70	0.01	2.149	5.83	1.32	0.7	99.3	0.0	3.59	0.74	0.86	3.17	2.7	0.005	0.72	0.0	0.04	17.36	0.01	2.600	5.05	3.08	0.9	99.1	0.0	3.93	0.89	0.68	0.84	2.66	4790	568	12	0	8	290	0	logfile
✔	9G69	51096	2025-06-05	2024-07-18	4.84	4.50	4.72	4.9	0.002	0.62	0.0	0.05	8.65	0.00	2.386	2.80	0.00	7.6	92.3	0.1	-2.18	0.69	0.70	—	4.8	0.006	0.98	0.0	0.05	9.65	0.00	2.378	8.27	0.00	23.5	76.3	0.2	-4.33	0.53	0.72	0.74	—	5053	1028	5	0	1	0	0	logfile
✔	9iSV	60850	2025-06-06	2024-07-18	3.07	3.27	3.12	3.2	0.002	0.64	0.0	0.04	25.32	0.00	2.229	0.97	0.00	0.0	0.0	0.0	—	0.63	0.55	—	3.2	0.007	0.90	0.0	0.05	25.27	0.01	1.802	13.88	0.00	0.0	0.0	0.0	—	0.79	0.65	0.59	—	7537	0	1	351	0	0	0	logfile
✔	9iSN	60839	2025-06-20	2024-07-18	2.97	3.17	2.98	3.2	0.004	0.74	0.0	0.04	16.81	0.01	2.198	5.71	0.65	5.2	94.8	0.0	-1.09	0.67	0.73	2.22	3.2	0.004	0.67	0.0	0.04	18.28	0.00	1.957	8.96	2.31	4.5	95.5	0.0	-0.31	0.44	0.67	0.74	1.78	24219	2931	8	68	3	0	0	logfile
✔	9CPo	45805	2025-06-20	2024-07-18	3.5	3.83	3.56	3.9	0.003	0.49	0.0	0.04	15.92	0.00	2.159	4.11	0.00	4.7	95.3	0.0	0.08	0.66	0.77	2.63	3.9	0.002	0.47	0.0	0.04	15.99	0.00	2.397	3.16	1.79	3.7	96.3	0.0	0.34	0.25	0.67	0.78	2.08	24089	1392	7	63	2	0	11624	logfile
✔	9G5i	51087	2025-06-05	2024-07-17	3.2	3.11	3.08	3.7	0.010	1.03	0.0	0.07	13.94	0.01	2.262	9.85	0.00	4.7	95.3	0.0	-1.90	0.71	0.76	2.10	3.7	0.003	0.61	0.0	0.05	15.53	0.00	2.453	10.44	2.85	5.0	95.0	0.0	-1.13	1.22	0.72	0.76	1.94	5252	732	3	0	0	0	0	logfile
✔	9Coo	45787	2025-06-06	2024-07-17	3.73	4.04	3.70	3.9	0.003	0.68	0.0	0.04	16.58	0.00	2.182	15.37	1.45	6.8	93.2	0.0	-2.63	0.79	0.75	0.77	3.9	0.005	0.76	0.0	0.04	17.00	0.00	2.221	12.86	6.21	9.3	90.7	0.0	-2.23	2.38	0.79	0.76	0.65	7493	1028	8	0	6	0	0	logfile
✔	9iSi	60836	2025-06-04	2024-07-17	3.56	3.80	3.46	3.7	0.005	0.67	0.0	0.04	14.08	0.00	2.397	9.20	0.00	2.5	97.5	0.0	1.49	0.50	0.67	1.52	3.8	0.003	0.63	0.0	0.04	15.56	0.00	2.636	7.21	3.15	2.9	97.1	0.0	2.27	1.51	0.52	0.72	1.36	1955	252	1	0	0	0	0	logfile
✔	9iS7	60833	2025-06-12	2024-07-17	2.87	3.10	3.00	3.0	0.003	0.61	0.0	0.05	25.49	0.00	2.059	1.40	0.00	0.0	0.0	0.0	—	0.78	0.77	—	3.0	0.007	0.75	0.0	0.04	25.33	0.01	1.842	5.03	0.00	0.0	0.0	0.0	—	1.15	0.83	0.84	—	15216	0	4	705	33	0	0	logfile
✔	9CP5	45800	2025-06-06	2024-07-17	3.51	3.94	3.57	3.9	0.003	0.73	0.0	0.05	14.36	0.00	2.238	5.44	0.00	6.2	93.8	0.0	-1.74	0.63	0.74	1.80	3.9	0.004	0.71	0.0	0.04	16.56	0.00	2.539	11.14	2.60	6.3	93.7	0.0	-0.19	1.55	0.66	0.77	1.68	7450	966	4	0	1	0	0	logfile
✔	9G5K	51088	2025-06-04	2024-07-17	2.87	2.98	2.84	2.9	0.004	0.62	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.65	0.0	0.04	16.46	0.00	2.501	5.21	2.82	2.8	97.2	0.0	2.14	0.90	0.64	0.84	2.76	4040	507	3	0	1	0	0	logfile
✔	9iS8	60834	2025-06-13	2024-07-17	2.77	2.94	2.78	3.1	0.010	0.99	9.0	0.06	18.28	0.01	2.190	15.06	10.09	9.2	90.7	0.1	-3.96	0.49	0.71	2.10	3.0	0.003	0.63	0.0	0.04	17.76	0.00	2.433	6.62	3.89	5.0	95.0	0.0	-0.16	1.26	0.63	0.82	2.20	14809	1796	8	0	7	0	0	logfile
✔	9Co9	45774	2025-06-05	2024-07-16	3.44	4.12	3.45	3.9	0.006	1.02	0.0	0.06	12.97	0.01	2.330	6.14	0.72	6.3	93.1	0.6	-2.36	0.77	0.78	3.28	3.9	0.004	0.79	0.0	0.05	15.64	0.00	2.398	8.51	2.86	4.7	94.9	0.3	-1.44	2.39	0.75	0.83	2.86	5198	661	4	0	0	0	0	logfile
✔	9CoD	45776	2025-06-11	2024-07-16	4.7	4.64	4.83	4.3	0.004	1.08	0.0	0.04	13.74	0.00	2.175	20.80	0.00	24.3	71.8	3.9	-4.85	0.84	0.75	—	4.4	0.003	0.91	0.0	0.04	14.62	0.00	2.548	15.60	0.00	20.4	74.8	4.9	-4.35	0.71	0.84	0.77	—	12405	1575	15	0	0	0	0	logfile
✔	9iRW	60823	2025-06-04	2024-07-16	3.26	3.49	3.17	3.5	0.007	0.72	0.0	0.04	11.88	0.01	2.239	8.79	3.47	4.9	95.1	0.0	-0.95	0.58	0.79	2.21	3.5	0.004	0.69	0.0	0.04	14.35	0.00	2.494	8.92	3.72	4.9	95.1	0.0	-0.68	0.29	0.63	0.82	2.60	3808	499	2	0	1	0	0	logfile
✔	9Co8	45773	2025-06-24	2024-07-16	2.99	3.57	3.08	3.4	0.005	1.00	0.0	0.06	12.63	0.01	2.231	4.13	0.03	6.2	93.6	0.1	-1.94	0.78	0.73	2.81	3.4	0.003	0.64	0.0	0.05	14.05	0.00	2.478	6.14	0.72	4.7	95.2	0.1	-0.60	1.02	0.79	0.85	2.53	29026	3657	22	0	32	0	0	logfile
✔	9Co7	45772	2025-06-05	2024-07-16	3.32	4.05	3.32	3.9	0.005	1.08	0.0	0.06	13.46	0.01	2.215	5.41	0.18	8.4	90.9	0.8	-2.76	0.74	0.82	2.87	3.8	0.004	0.84	0.0	0.05	15.66	0.01	2.262	10.72	2.14	9.0	90.6	0.5	-1.70	1.39	0.75	0.84	3.36	5220	666	4	0	0	0	0	logfile
✔	9Co6	45771	2025-06-24	2024-07-16	3.01	3.57	3.05	3.4	0.004	0.87	0.0	0.06	12.95	0.01	1.961	4.49	0.03	5.4	94.4	0.2	-1.26	0.81	0.81	2.45	3.4	0.003	0.62	0.0	0.04	14.02	0.00	2.467	5.30	0.98	4.4	95.5	0.1	-0.28	0.47	0.82	0.87	2.46	28149	3546	17	0	36	0	0	logfile

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