Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CF2	45527	2025-06-16	2024-06-27	3.15	2.38	3.24	2.8	0.002	0.61	0.0	0.04	18.51	0.00	1.441	3.97	0.00	1.4	98.6	0.0	2.60	0.67	0.60	2.80	2.8	0.005	0.63	0.0	0.04	21.11	0.00	2.289	6.09	0.88	4.5	95.5	0.0	0.85	1.45	0.75	0.78	3.33	18387	888	7	121	0	0	8649	logfile
✔	9CFW	45565	2025-06-13	2024-06-27	3.0	3.62	2.92	3.5	0.013	1.83	1.0	0.09	14.92	0.02	1.823	0.29	1.88	4.4	95.5	0.2	-1.69	0.72	0.64	2.79	3.5	0.003	0.71	0.0	0.04	16.22	0.00	1.862	8.14	2.29	3.0	97.0	0.0	0.62	0.73	0.80	0.81	2.18	15838	1981	9	0	7	0	0	logfile
✔	9iKC	60655	2025-06-11	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.005	0.70	0.0	0.05	15.89	0.00	2.532	3.08	1.00	2.7	97.3	0.0	-0.21	1.14	0.75	0.89	6.63	12555	1587	6	0	0	150	0	logfile
✔	9iKK	60657	2025-06-24	2024-06-27	3.51	3.86	3.59	3.9	0.003	0.70	0.0	0.04	15.43	0.00	2.199	12.01	0.52	5.2	94.8	0.0	-1.86	0.66	0.80	2.25	3.8	0.003	0.69	0.0	0.04	16.26	0.00	2.419	9.42	3.21	7.4	92.6	0.0	-2.54	1.67	0.67	0.83	2.03	28480	3792	16	0	0	0	0	logfile
✔	9CFL	45550	2025-06-07	2024-06-27	2.3	2.52	2.42	2.7	0.008	1.21	2.0	0.07	25.65	0.02	1.887	3.76	3.83	1.1	98.9	0.0	-0.09	0.63	0.81	3.96	2.7	0.003	0.59	0.0	0.05	18.90	0.00	1.977	5.48	2.34	1.3	98.7	0.0	1.48	1.13	0.60	0.80	3.44	8925	1068	10	0	7	8	0	logfile
✔	9CFX	45566	2025-06-13	2024-06-27	2.7	3.08	2.72	3.1	0.013	1.90	8.0	0.10	14.65	0.02	1.857	0.38	2.30	4.4	95.3	0.3	-2.20	0.63	0.69	3.26	3.1	0.003	0.68	0.0	0.04	17.06	0.00	1.962	6.17	3.01	2.8	97.1	0.1	0.58	0.71	0.68	0.77	2.27	15749	1972	8	0	6	0	0	logfile
✔	9CF1	45526	2025-06-15	2024-06-27	3.52	3.91	3.74	3.7	0.013	1.84	1.0	0.10	20.92	0.02	1.358	1.05	0.76	6.0	93.5	0.5	-1.31	0.72	0.61	2.15	3.7	0.004	0.65	0.0	0.04	21.33	0.00	2.339	9.33	1.39	5.9	94.0	0.1	-0.13	1.09	0.77	0.75	1.35	17138	888	5	82	0	0	8199	logfile
✔	9FVA	50794	2025-06-07	2024-06-26	4.4	4.69	4.51	4.5	0.005	1.04	0.0	0.05	16.48	0.01	2.206	7.15	0.72	6.6	93.3	0.1	-1.42	0.66	0.76	—	4.5	0.003	0.76	0.0	0.04	14.57	0.00	2.332	14.41	0.00	5.7	94.3	0.0	-0.49	1.53	0.68	0.77	—	8822	1138	2	0	0	0	0	logfile
✔	9FV8	50792	2025-06-07	2024-06-26	3.4	3.73	3.48	3.7	0.005	0.91	0.0	0.05	16.94	0.01	2.273	3.24	0.31	6.9	93.0	0.1	-3.46	0.70	0.78	1.17	3.7	0.003	0.64	0.0	0.04	17.74	0.00	2.493	6.15	4.44	6.3	93.7	0.1	-1.57	0.43	0.73	0.83	0.69	8822	1138	2	0	0	0	0	logfile
✔	9FUW	50780	2025-06-07	2024-06-26	3.8	4.20	3.89	4.0	0.004	0.73	2.0	0.04	17.19	0.00	2.221	13.46	0.31	5.7	94.2	0.1	-0.15	0.74	0.81	1.18	4.0	0.003	0.72	0.0	0.04	17.69	0.00	2.519	10.45	3.10	4.5	95.4	0.1	0.48	1.14	0.74	0.81	1.34	8822	1138	2	0	0	0	0	logfile
✔	9FV9	50793	2025-06-07	2024-06-26	3.6	3.99	3.72	3.9	0.006	1.07	1.0	0.06	17.48	0.01	2.042	3.97	0.31	5.8	94.1	0.1	-3.86	0.71	0.79	0.77	3.9	0.002	0.65	0.0	0.04	18.06	0.00	2.485	6.54	4.34	4.5	95.4	0.1	-1.22	0.87	0.71	0.78	0.63	8822	1138	2	0	0	0	0	logfile
✔	9FUU	50778	2025-06-07	2024-06-26	3.6	3.63	3.34	3.6	0.005	0.69	0.0	0.04	17.55	0.00	2.163	9.05	0.62	5.4	94.6	0.0	-3.08	0.65	0.83	0.99	3.6	0.003	0.68	0.0	0.04	18.08	0.00	2.499	8.60	5.17	4.6	95.3	0.1	-1.95	0.82	0.63	0.80	1.10	8822	1138	2	0	0	0	0	logfile
✔	9FUQ	50774	2025-06-07	2024-06-26	3.8	3.88	3.57	3.8	0.005	0.75	0.0	0.04	13.92	0.00	2.209	6.72	0.41	7.8	92.1	0.1	-4.19	0.64	0.81	1.29	3.8	0.002	0.70	0.0	0.04	15.80	0.00	2.524	4.84	2.17	6.2	93.7	0.1	-1.78	0.59	0.69	0.81	0.86	8924	1138	4	0	2	0	0	logfile
✔	9FV7	50791	2025-06-07	2024-06-26	4.0	4.46	4.11	4.3	0.006	1.18	0.0	0.06	16.98	0.01	2.244	10.39	0.93	4.1	95.6	0.3	-2.26	0.75	0.81	—	4.2	0.004	0.72	0.0	0.04	17.25	0.00	2.529	15.03	5.06	4.5	95.5	0.0	0.91	0.86	0.76	0.83	—	8822	1138	2	0	0	0	0	logfile
✔	9FUZ	50783	2025-06-07	2024-06-26	4.2	4.66	4.30	4.4	0.005	0.98	0.0	0.05	16.67	0.01	2.201	8.32	0.62	4.6	95.1	0.3	-0.25	0.68	0.81	—	4.4	0.004	0.69	0.0	0.04	13.95	0.00	2.418	14.41	0.00	4.9	94.7	0.4	1.04	1.01	0.68	0.81	—	8822	1138	2	0	0	0	0	logfile
✔	9FUS	50776	2025-06-07	2024-06-26	3.8	3.75	3.43	3.7	0.004	0.72	0.0	0.04	12.69	0.00	1.817	5.14	0.10	6.6	93.2	0.2	-2.08	0.66	0.80	1.59	3.7	0.004	0.72	0.0	0.04	15.71	0.00	2.459	10.45	3.00	6.6	93.4	0.0	-0.73	0.90	0.69	0.78	1.82	8822	1138	2	0	0	0	0	logfile
✔	9iK4	60648	2025-06-08	2024-06-26	3.34	3.55	3.33	3.5	0.013	1.41	1.0	0.26	19.37	0.01	1.881	9.85	0.00	14.1	85.9	0.1	-6.52	0.55	0.67	2.00	3.5	0.004	0.83	0.0	0.04	18.71	0.00	2.417	10.05	2.69	12.7	87.3	0.0	-3.74	0.62	0.58	0.77	1.91	10114	1214	4	0	4	0	0	logfile
✔	9FVD	50803	2025-06-09	2024-06-26	3.2	3.54	3.13	3.4	0.003	0.61	0.0	0.04	15.20	0.00	0.014	16.91	0.00	2.5	97.5	0.0	1.52	0.47	0.80	3.04	3.5	0.008	2.01	1.0	0.20	21.65	0.01	1.697	36.64	3.67	5.3	94.7	0.0	-0.20	2.26	0.44	0.72	1.55	10146	1143	8	54	0	0	0	logfile
✔	9FUV	50779	2025-06-07	2024-06-26	4.0	4.34	4.07	4.2	0.004	0.69	0.0	0.04	17.16	0.00	2.190	14.25	0.62	5.0	94.7	0.3	-0.04	0.72	0.80	—	4.2	0.003	0.74	0.0	0.04	17.82	0.00	2.585	13.91	4.75	4.3	95.5	0.2	0.51	0.90	0.74	0.81	—	8822	1138	2	0	0	0	0	logfile
✔	9FUX	50781	2025-06-13	2024-06-26	2.49	2.83	—	2.8	0.006	0.70	0.0	0.05	13.85	0.01	1.993	8.00	0.00	3.7	96.2	0.1	0.21	0.72	0.82	3.71	2.8	0.003	0.61	0.0	0.04	16.26	0.00	2.229	5.77	1.34	3.1	96.9	0.1	1.64	0.81	0.68	0.82	3.12	14556	1811	6	0	2	0	0	logfile

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