Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9FUY	50782	2025-06-07	2024-06-26	4.1	4.74	4.09	4.4	0.005	1.04	1.0	0.05	17.01	0.01	2.203	8.10	0.62	4.7	95.2	0.1	0.02	0.71	0.82	—	4.5	0.003	0.73	0.0	0.04	14.04	0.00	2.499	13.69	0.00	4.3	95.7	0.0	0.54	0.69	0.69	0.82	—	8822	1138	2	0	0	0	0	logfile
✔	9FUZ	50783	2025-06-07	2024-06-26	4.2	4.66	4.30	4.4	0.005	0.98	0.0	0.05	16.67	0.01	2.201	8.32	0.62	4.6	95.1	0.3	-0.25	0.68	0.81	—	4.4	0.004	0.69	0.0	0.04	13.95	0.00	2.418	14.41	0.00	4.9	94.7	0.4	1.04	1.01	0.68	0.81	—	8822	1138	2	0	0	0	0	logfile
✔	9iJZ	60646	2025-06-05	2024-06-25	2.91	3.32	2.89	3.2	0.006	0.79	0.0	0.04	16.40	0.00	2.034	14.61	0.29	5.7	94.3	0.0	0.55	0.53	0.77	2.36	3.2	0.004	0.63	0.0	0.04	16.39	0.00	2.592	8.54	3.75	4.4	95.6	0.0	1.09	0.35	0.49	0.74	2.60	6654	784	4	0	4	0	0	logfile
✔	9CDR	45485	2025-06-21	2024-06-25	3.91	4.77	3.93	4.0	0.009	0.65	0.0	0.04	14.87	0.00	1.957	11.14	0.00	6.4	93.4	0.2	-0.93	0.87	0.69	0.29	4.0	0.003	0.61	0.0	0.04	15.84	0.00	2.221	10.58	1.32	6.2	93.6	0.2	-0.34	1.80	0.91	0.78	0.29	25079	1574	4	0	4	0	12475	logfile
✔	9CE0	45489	2025-06-11	2024-06-25	3.97	5.06	4.02	4.0	0.010	0.69	0.0	0.04	15.09	0.01	1.931	16.34	0.15	6.3	93.6	0.1	-1.00	0.87	0.70	0.27	4.0	0.009	0.80	0.0	0.04	16.26	0.00	2.144	15.38	1.69	5.6	94.4	0.0	-0.32	2.40	0.92	0.82	0.29	12551	1568	4	0	4	0	0	logfile
✔	9iJY	60645	2025-06-05	2024-06-25	2.64	3.07	2.64	3.0	0.005	0.84	0.0	0.04	16.72	0.00	2.215	15.66	0.29	5.2	94.8	0.0	0.06	0.51	0.76	2.61	3.0	0.003	0.66	0.0	0.04	17.02	0.00	2.602	10.19	2.45	4.4	95.6	0.0	1.30	1.38	0.52	0.77	2.87	6654	784	4	0	4	0	0	logfile
✔	9CDA	45465	2025-06-08	2024-06-24	3.3	3.08	3.29	3.3	0.006	0.59	0.0	0.05	18.16	0.00	1.993	7.61	1.85	5.1	94.9	0.0	-2.65	0.60	0.87	4.03	3.3	0.008	0.72	0.0	0.05	18.56	0.00	2.524	5.54	2.88	8.2	91.8	0.0	-2.76	0.51	0.61	0.90	4.30	9855	1440	18	0	0	0	0	logfile
✔	9FTi	50746	2025-06-17	2024-06-24	3.5	3.01	3.49	3.0	0.005	0.60	0.0	0.04	16.70	0.00	2.028	5.56	0.27	5.7	94.3	0.0	-1.77	0.70	0.80	2.93	3.0	0.004	0.68	0.0	0.04	17.52	0.00	2.382	4.41	6.67	4.8	95.2	0.0	-0.95	0.92	0.68	0.79	2.36	19935	2780	5	0	0	0	0	logfile
✔	9CD9	45464	2025-06-09	2024-06-24	3.2	3.12	3.06	3.3	0.006	0.53	0.0	0.05	15.89	0.00	2.295	9.25	1.10	1.4	98.6	0.0	-3.04	0.72	0.90	5.83	3.3	0.002	0.50	0.0	0.05	16.96	0.00	2.611	4.49	2.02	1.2	98.8	0.0	-2.94	0.43	0.66	0.90	5.81	10989	1606	22	0	0	0	0	logfile
✔	9CDD	45468	2025-06-05	2024-06-24	3.05	3.24	3.04	3.4	0.014	1.21	0.0	0.08	25.46	0.01	0.629	22.39	1.95	3.4	96.6	0.0	-1.04	0.50	0.64	2.41	3.3	0.004	0.68	0.0	0.04	17.81	0.00	2.248	17.96	2.28	3.1	96.9	0.0	0.88	0.89	0.55	0.71	2.00	6867	720	6	0	24	81	0	logfile
✔	9FTG	50744	2025-06-18	2024-06-24	3.1	3.38	3.05	3.3	0.003	0.48	0.0	0.04	15.40	0.00	2.278	4.17	0.00	6.2	93.8	0.0	-0.54	0.71	0.90	3.62	3.3	0.003	0.55	0.0	0.04	15.75	0.00	2.356	3.78	2.78	5.6	94.4	0.0	0.25	0.31	0.67	0.89	3.26	21205	2795	10	0	5	0	0	logfile
✔	9FTH	50745	2025-06-19	2024-06-24	2.9	3.12	2.93	3.1	0.002	0.46	0.0	0.04	15.69	0.00	2.029	3.58	0.00	2.4	97.6	0.0	0.58	0.77	0.88	3.17	3.1	0.004	0.77	1.0	0.05	16.23	0.00	2.116	3.94	2.03	4.4	95.6	0.0	0.44	0.96	0.79	0.89	3.48	22780	3010	5	0	0	0	0	logfile
✔	9FTJ	50747	2025-06-10	2024-06-24	4.0	4.14	3.84	4.0	0.007	0.64	0.0	0.05	15.42	0.00	2.304	5.97	0.00	5.1	94.9	0.0	-0.50	0.75	0.88	—	4.0	0.004	0.58	0.0	0.04	16.13	0.00	2.581	5.29	5.33	3.8	96.2	0.0	0.59	0.92	0.74	0.87	—	12045	1570	5	0	0	0	0	logfile
✔	9FT7	50741	2025-06-04	2024-06-24	3.16	3.67	3.16	3.5	0.006	0.67	0.0	0.04	11.56	0.01	2.317	1.26	0.00	1.2	98.8	0.0	1.52	0.61	0.86	5.08	3.5	0.003	0.45	0.0	0.03	13.12	0.00	2.650	1.89	2.02	1.6	98.4	0.0	5.00	0.28	0.52	0.81	3.73	4016	516	4	0	4	0	0	logfile
✔	9CDB	45466	2025-06-24	2024-06-24	3.6	4.64	3.64	3.7	0.007	0.75	0.0	0.04	18.81	0.01	1.971	13.17	0.52	5.6	94.2	0.2	0.36	0.91	0.78	0.90	3.8	0.003	0.62	0.0	0.04	18.17	0.00	2.056	9.51	2.47	5.2	94.7	0.1	0.87	0.48	0.94	0.87	1.01	28605	3576	15	9	18	0	0	logfile
✔	9iJD	60628	2025-06-08	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.88	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.003	0.59	0.0	0.04	17.68	0.00	2.474	6.47	3.67	2.8	97.2	0.0	0.65	1.14	0.57	0.75	2.29	9371	1227	7	0	1	0	0	logfile
✔	9iJE	60629	2025-06-08	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.002	0.53	0.0	0.04	16.66	0.00	2.567	2.82	2.86	2.1	97.9	0.0	1.77	0.37	0.60	0.79	3.18	9340	1227	7	0	1	1	0	logfile
✔	9iiZ	60610	2025-06-04	2024-06-21	3.8	4.41	3.86	4.3	0.005	1.23	0.0	0.07	22.77	0.01	2.256	10.55	0.59	9.4	90.6	0.0	-3.44	0.71	0.60	-0.85	4.3	0.003	0.86	0.0	0.04	22.51	0.00	2.524	21.36	4.72	8.0	91.7	0.3	-2.09	1.11	0.72	0.62	0.82	4080	377	3	49	0	0	0	logfile
✔	9FSM	50728	2025-06-15	2024-06-21	2.47	3.36	2.52	3.2	0.006	0.65	0.0	0.04	17.81	0.00	2.244	7.41	3.39	5.0	95.0	0.0	0.04	0.61	0.63	0.28	3.1	0.004	0.61	0.0	0.04	17.96	0.00	2.484	7.03	2.50	4.1	95.9	0.0	0.32	0.56	0.68	0.85	4.11	17060	2260	20	0	10	0	0	logfile
✔	9iiU	60605	2025-06-18	2024-06-21	2.98	3.51	3.12	3.4	0.008	1.19	0.0	0.04	17.70	0.01	2.010	5.29	0.00	2.9	96.9	0.2	1.55	0.68	0.83	3.43	3.4	0.004	0.59	0.0	0.04	17.67	0.00	2.276	10.76	1.23	2.9	96.9	0.1	1.30	1.04	0.64	0.81	2.67	21452	2301	27	0	67	2	0	logfile

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