Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iiZ	60610	2025-06-04	2024-06-21	3.8	4.41	3.86	4.3	0.005	1.23	0.0	0.07	22.77	0.01	2.256	10.55	0.59	9.4	90.6	0.0	-3.44	0.71	0.60	-0.85	4.3	0.003	0.86	0.0	0.04	22.51	0.00	2.524	21.36	4.72	8.0	91.7	0.3	-2.09	1.11	0.72	0.62	0.82	4080	377	3	49	0	0	0	logfile
✔	9CCi	45443	2025-06-05	2024-06-21	2.65	2.16	2.55	1.7	0.005	0.90	0.0	0.06	12.28	0.01	2.337	1.66	0.00	4.3	95.7	0.0	-1.25	0.58	0.81	4.22	2.0	0.003	0.56	0.0	0.04	14.81	0.00	2.623	5.07	2.91	3.0	97.0	0.0	0.10	0.38	0.60	0.84	4.11	4921	631	4	0	1	0	0	logfile
✔	9iiY	60609	2025-06-05	2024-06-21	3.0	3.31	3.13	3.4	0.003	0.79	0.0	0.08	21.55	0.00	2.103	19.24	0.36	9.0	91.0	0.0	-3.11	0.48	0.46	0.64	3.4	0.005	0.99	0.0	0.08	21.87	0.01	2.336	23.25	4.98	14.5	85.5	0.0	-3.35	0.54	0.53	0.55	0.71	5943	620	3	43	0	0	0	logfile
✔	9iJ4	60615	2025-06-05	2024-06-21	2.7	3.01	2.82	3.0	0.006	0.91	0.0	0.05	19.91	0.01	1.731	8.91	0.88	6.5	93.3	0.1	-1.89	0.62	0.65	1.52	3.0	0.004	0.70	0.0	0.05	20.15	0.01	2.355	14.27	3.09	6.5	93.3	0.1	-1.09	0.38	0.59	0.69	2.02	7129	755	4	51	1	0	0	logfile
✔	9iJ1	60612	2025-06-06	2024-06-21	3.2	3.65	3.54	3.7	0.005	1.08	0.0	0.06	20.53	0.01	2.099	7.65	0.88	7.6	92.4	0.0	-2.66	0.59	0.60	1.31	3.7	0.003	0.77	0.0	0.05	20.64	0.01	2.108	17.86	5.71	7.6	92.4	0.0	-1.96	0.46	0.59	0.62	0.83	7056	755	4	47	1	0	0	logfile
✔	9FSM	50728	2025-06-15	2024-06-21	2.47	3.36	2.52	3.2	0.006	0.65	0.0	0.04	17.81	0.00	2.244	7.41	3.39	5.0	95.0	0.0	0.04	0.61	0.63	0.28	3.1	0.004	0.61	0.0	0.04	17.96	0.00	2.484	7.03	2.50	4.1	95.9	0.0	0.32	0.56	0.68	0.85	4.11	17060	2260	20	0	10	0	0	logfile
✔	9iiU	60605	2025-06-18	2024-06-21	2.98	3.51	3.12	3.4	0.008	1.19	0.0	0.04	17.70	0.01	2.010	5.29	0.00	2.9	96.9	0.2	1.55	0.68	0.83	3.43	3.4	0.004	0.59	0.0	0.04	17.67	0.00	2.276	10.76	1.23	2.9	96.9	0.1	1.30	1.04	0.64	0.81	2.67	21452	2301	27	0	67	2	0	logfile
✔	9iJ2	60613	2025-06-04	2024-06-21	3.9	4.21	4.00	4.2	0.005	1.13	0.0	0.06	22.17	0.01	2.273	9.61	0.32	9.8	90.2	0.0	-3.30	0.59	0.49	1.13	4.1	0.003	0.84	0.0	0.04	21.96	0.00	2.537	18.79	5.06	9.5	90.2	0.3	-2.30	1.26	0.61	0.51	0.31	3729	351	3	43	0	0	0	logfile
✔	9CBX	42499	2025-06-10	2024-06-20	2.2	2.61	2.34	2.6	0.014	1.85	0.0	0.09	23.00	0.05	1.797	0.24	0.00	0.0	0.0	0.0	—	0.58	0.71	—	2.6	0.006	0.66	0.0	0.04	23.93	0.01	1.752	4.96	0.00	0.0	0.0	0.0	—	1.24	0.62	0.77	—	12778	0	2	387	54	280	4161	logfile
✔	9CC3	45433	2025-06-22	2024-06-20	3.23	3.69	3.26	3.5	0.002	0.55	0.0	0.04	12.88	0.00	2.068	4.56	0.00	1.4	98.6	0.0	1.22	0.79	0.83	2.26	3.5	0.004	0.60	0.0	0.04	14.56	0.00	1.911	4.85	1.44	2.1	97.9	0.0	1.22	1.87	0.79	0.85	2.18	25779	3323	11	0	38	0	0	logfile
✔	9CBU	42499	2025-06-10	2024-06-20	2.2	2.61	2.34	2.6	0.014	1.85	0.0	0.09	23.00	0.05	1.831	0.24	0.00	0.0	0.0	0.0	—	0.58	0.72	—	2.6	0.005	0.65	0.0	0.04	24.05	0.01	1.764	5.86	0.00	0.0	0.0	0.0	—	1.25	0.65	0.80	—	12600	0	2	387	22	134	4161	logfile
✔	9CC1	45431	2025-06-21	2024-06-20	2.92	3.26	2.88	3.2	0.003	0.65	1.0	0.04	12.73	0.00	2.013	5.36	0.08	1.4	98.5	0.0	0.65	0.80	0.84	3.20	3.2	0.004	0.79	2.0	0.04	15.57	0.00	1.992	5.91	1.47	1.7	98.3	0.0	1.16	0.50	0.81	0.87	2.70	24523	3123	13	0	24	0	0	logfile
✔	9FS5	50723	2025-06-15	2024-06-20	2.66	3.55	2.70	3.5	0.004	0.50	0.0	0.04	15.59	0.00	2.222	6.29	3.60	4.5	95.5	0.0	0.97	0.61	0.63	0.52	3.3	0.004	0.58	0.0	0.04	16.67	0.00	2.440	7.23	3.37	3.1	96.9	0.0	1.07	1.08	0.70	0.87	3.48	16770	2250	10	0	0	0	0	logfile
✔	9CC0	45430	2025-06-21	2024-06-20	3.31	3.66	3.24	3.5	0.003	0.54	0.0	0.04	13.25	0.00	1.995	5.51	0.08	1.9	98.1	0.0	1.17	0.83	0.85	2.83	3.5	0.002	0.54	0.0	0.04	14.71	0.00	2.012	4.60	0.83	1.7	98.3	0.0	1.49	0.32	0.84	0.87	2.20	24603	3128	13	0	22	0	0	logfile
✔	9CBZ	45429	2025-06-13	2024-06-20	2.86	2.52	2.85	2.9	0.005	0.65	0.0	0.05	13.20	0.00	1.462	6.02	0.00	2.8	97.2	0.0	1.11	0.53	0.60	0.52	2.8	0.004	0.58	0.0	0.04	15.69	0.00	2.501	6.44	1.24	1.9	98.1	0.0	1.59	1.46	0.69	0.90	3.66	15424	1892	8	0	8	0	0	logfile
✔	9iiG	60594	2025-06-25	2024-06-20	2.6	2.83	2.69	2.8	0.008	0.74	0.0	0.04	15.76	0.01	2.189	9.23	0.00	0.6	99.4	0.0	-0.32	0.67	0.84	4.00	2.8	0.006	0.51	0.0	0.03	18.58	0.00	2.550	7.29	1.32	0.7	99.3	0.0	4.40	0.69	0.64	0.84	3.68	30876	3744	36	0	12	0	0	logfile
✔	9ii3	60589	2025-06-14	2024-06-19	3.9	3.97	—	3.9	0.004	0.62	0.0	0.04	12.82	0.00	2.110	13.02	0.00	6.4	93.6	0.0	-0.92	0.80	0.72	1.33	3.8	0.003	0.69	0.0	0.04	15.43	0.00	2.336	11.35	1.90	6.6	93.4	0.0	-1.16	1.23	0.81	0.73	0.88	16488	2156	10	0	6	0	0	logfile
✔	9CAX	45406	2025-06-04	2024-06-18	3.37	3.55	3.26	3.5	0.005	0.92	0.0	0.05	16.47	0.01	2.234	5.04	0.00	4.5	95.3	0.2	-2.36	0.61	0.83	2.06	3.5	0.003	0.68	0.0	0.04	17.26	0.00	2.499	8.31	2.58	4.1	95.7	0.2	1.96	0.51	0.62	0.85	2.17	3611	470	1	0	0	0	0	logfile
✔	8ZYo	60574	2025-06-05	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.002	0.52	0.0	0.04	16.49	0.00	2.552	5.63	3.41	2.3	97.7	0.0	2.36	0.31	0.57	0.84	1.67	6238	785	5	0	1	0	0	logfile
✔	8ZYQ	60576	2025-06-05	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.56	0.0	0.04	16.22	0.00	2.514	5.69	2.73	2.7	97.3	0.0	1.68	0.37	0.56	0.85	2.67	6329	796	5	0	1	0	0	logfile

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