Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CAX	45406	2025-06-04	2024-06-18	3.37	3.55	3.26	3.5	0.005	0.92	0.0	0.05	16.47	0.01	2.234	5.04	0.00	4.5	95.3	0.2	-2.36	0.61	0.83	2.06	3.5	0.003	0.68	0.0	0.04	17.26	0.00	2.499	8.31	2.58	4.1	95.7	0.2	1.96	0.51	0.62	0.85	2.17	3611	470	1	0	0	0	0	logfile
✔	8ZYQ	60576	2025-06-05	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.56	0.0	0.04	16.22	0.00	2.514	5.69	2.73	2.7	97.3	0.0	1.68	0.37	0.56	0.85	2.67	6329	796	5	0	1	0	0	logfile
✔	8ZYM	60572	2025-06-14	2024-06-18	3.23	3.47	3.25	3.4	0.003	0.56	0.0	0.04	16.50	0.00	2.139	13.04	3.83	4.5	95.5	0.0	-0.56	0.73	0.75	1.68	3.4	0.004	0.64	0.0	0.05	16.67	0.00	2.522	10.61	4.21	5.6	94.4	0.0	-0.44	0.30	0.73	0.75	1.56	15829	2055	10	0	0	1	0	logfile
✔	8ZZ0	60585	2025-06-07	2024-06-18	3.43	3.30	3.36	3.5	0.003	0.58	0.0	0.04	17.58	0.01	2.123	9.76	0.00	1.9	98.1	0.0	2.96	0.67	0.80	0.46	3.5	0.003	0.54	0.0	0.04	17.85	0.00	2.506	7.28	1.17	1.6	98.4	0.0	3.88	1.40	0.66	0.78	0.51	8914	1174	10	0	0	3	0	logfile
✔	8ZYN	60573	2025-06-05	2024-06-18	3.27	3.51	3.25	3.4	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.56	0.0	0.04	15.67	0.00	2.627	5.34	3.46	2.8	97.2	0.0	1.22	0.35	0.58	0.83	1.14	6640	840	4	0	0	0	0	logfile
✔	8ZYo	60574	2025-06-05	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.002	0.52	0.0	0.04	16.49	0.00	2.552	5.63	3.41	2.3	97.7	0.0	2.36	0.31	0.57	0.84	1.67	6238	785	5	0	1	0	0	logfile
✔	8ZYZ	60584	2025-06-07	2024-06-18	3.16	2.82	3.04	3.1	0.004	0.53	0.0	0.04	18.05	0.00	2.087	8.66	0.11	2.1	97.9	0.0	3.30	0.60	0.80	1.20	3.1	0.003	0.49	0.0	0.04	18.11	0.00	2.526	7.45	1.70	2.0	98.0	0.0	4.18	1.38	0.56	0.76	1.35	8918	1174	12	0	2	5	0	logfile
✔	9CB1	45412	2025-06-13	2024-06-18	4.24	6.55	4.24	4.4	0.006	0.87	0.0	0.06	10.32	0.01	2.256	6.86	0.72	3.5	96.3	0.2	-0.53	0.84	0.80	—	4.4	0.003	0.60	0.0	0.04	11.48	0.00	2.499	13.29	0.00	3.1	96.9	0.0	0.42	3.12	0.87	0.85	—	15105	1968	12	0	6	0	0	logfile
✔	9ii2	60588	2025-06-18	2024-06-18	3.7	2.39	—	2.2	0.004	0.51	0.0	0.04	12.87	0.00	2.029	8.98	0.00	3.8	96.2	0.0	0.72	0.69	0.65	1.25	3.4	0.003	0.63	0.0	0.04	15.57	0.00	2.452	11.12	2.24	4.2	95.7	0.1	-0.23	0.85	0.71	0.69	1.75	21112	2750	12	0	10	0	0	logfile
✔	9CBB	45421	2025-06-06	2024-06-18	4.15	4.29	4.00	4.2	0.007	0.92	0.0	0.04	14.26	0.01	2.221	3.12	0.00	6.2	93.8	0.0	-2.08	0.49	0.73	—	4.2	0.003	0.63	0.0	0.04	14.04	0.00	2.379	7.88	0.00	7.3	92.7	0.0	-0.08	0.96	0.49	0.74	—	7356	470	2	0	1	0	3733	logfile
✔	9CAP	45399	2025-06-12	2024-06-17	2.7	3.22	2.66	3.0	0.012	1.49	0.0	0.05	21.88	0.00	2.249	7.40	0.21	2.5	97.5	0.0	0.30	0.74	0.87	4.55	3.0	0.008	0.77	0.0	0.04	18.59	0.00	2.401	6.89	1.89	2.4	97.6	0.0	0.43	1.01	0.75	0.88	3.80	13783	1613	3	0	30	0	0	logfile
✔	9CAK	45394	2025-06-05	2024-06-17	3.01	2.30	3.04	2.1	0.005	0.62	0.0	0.04	15.87	0.03	2.010	7.48	0.00	4.8	95.2	0.0	-0.27	0.79	0.80	3.23	2.0	0.004	0.58	0.0	0.04	17.63	0.00	2.155	6.19	2.25	4.8	95.2	0.0	0.45	0.91	0.80	0.82	2.76	6268	773	5	10	2	0	0	logfile
✔	9CAH	45391	2025-06-06	2024-06-17	3.16	2.35	3.20	2.1	0.004	0.62	0.0	0.04	14.90	0.00	2.049	8.60	0.13	7.2	92.6	0.2	-0.12	0.76	0.78	2.31	2.1	0.004	0.65	0.0	0.04	16.98	0.00	2.109	7.47	2.67	7.2	92.8	0.0	-0.05	0.36	0.79	0.82	2.63	7116	907	3	0	4	0	0	logfile
✔	9CAG	45390	2025-06-05	2024-06-17	3.33	2.37	3.31	2.2	0.004	0.63	0.0	0.05	15.05	0.00	2.063	9.61	0.15	4.7	95.2	0.1	0.57	0.77	0.79	3.15	2.2	0.002	0.53	0.0	0.04	17.55	0.00	2.083	6.38	1.80	3.8	96.1	0.1	0.65	0.36	0.79	0.82	2.68	6231	773	4	8	2	0	0	logfile
✔	9CAJ	45393	2025-06-05	2024-06-17	3.51	2.46	3.38	2.2	0.004	0.66	0.0	0.04	15.92	0.01	2.088	12.57	0.45	4.8	95.2	0.0	-0.25	0.77	0.76	2.72	2.2	0.004	0.66	0.0	0.04	17.50	0.00	2.075	7.98	2.69	5.2	94.7	0.1	-0.28	0.40	0.77	0.77	2.25	6245	773	4	9	1	0	0	logfile
✔	9CAL	45395	2025-06-05	2024-06-17	3.15	2.36	3.09	2.1	0.004	0.68	0.0	0.04	15.36	0.01	2.136	5.47	0.00	3.9	96.1	0.0	-0.07	0.77	0.80	2.39	2.1	0.003	0.55	0.0	0.04	17.55	0.00	2.243	5.63	1.80	4.2	95.8	0.0	0.64	0.31	0.80	0.83	2.27	6268	773	5	10	1	0	0	logfile
✔	9C9W	45374	2025-06-12	2024-06-16	4.25	3.29	4.36	2.2	0.005	0.80	0.0	0.04	19.22	0.01	2.070	19.12	0.15	9.6	90.2	0.2	-1.54	0.72	0.69	—	2.1	0.003	0.78	0.0	0.04	19.21	0.00	2.281	13.96	0.00	8.4	91.5	0.1	-1.18	1.43	0.72	0.71	—	13761	1546	8	80	1	0	0	logfile
✔	8ZY2	60553	2025-06-23	2024-06-16	2.9	3.71	2.92	3.3	0.006	0.79	2.0	0.05	14.21	0.01	2.276	3.26	0.17	3.4	96.6	0.0	-0.77	0.89	0.88	3.57	3.3	0.002	0.55	0.0	0.04	14.16	0.00	2.527	3.31	0.90	2.8	97.2	0.0	0.23	0.25	0.89	0.88	3.38	27099	3309	27	0	81	0	0	logfile
✔	8ZY4	60555	2025-06-22	2024-06-16	2.53	3.34	2.56	3.0	0.004	0.69	0.0	0.05	15.75	0.01	2.222	3.18	2.47	4.1	95.9	0.0	-1.62	0.86	0.87	3.28	3.0	0.007	0.71	0.0	0.05	15.61	0.00	2.404	4.17	2.51	6.0	94.0	0.0	-0.80	0.31	0.87	0.89	3.23	26181	3219	21	0	75	0	0	logfile
✔	9CA1	45379	2025-06-05	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.58	0.0	0.04	17.60	0.00	2.094	5.79	3.15	4.0	96.0	0.0	0.22	0.31	0.79	0.82	1.62	6265	773	5	10	2	0	0	logfile

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