Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZWK	60530	2025-06-04	2024-06-13	3.4	2.76	2.78	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.60	0.0	0.05	17.06	0.00	2.600	6.09	6.67	8.2	91.8	0.0	-3.62	1.50	0.36	0.82	4.52	2760	378	8	6	0	0	0	logfile
✔	8ZWi	60528	2025-06-04	2024-06-13	3.0	2.75	2.10	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.007	1.50	0.0	0.05	15.19	0.00	2.615	5.19	1.94	2.3	97.7	0.0	-1.91	0.90	0.43	0.86	5.50	2526	366	6	0	0	0	0	logfile
✔	8ZWH	60527	2025-06-04	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.003	0.54	0.0	0.05	11.81	0.00	2.634	6.21	1.32	6.9	93.1	0.0	-3.38	1.17	0.43	0.85	3.48	2268	330	6	0	0	0	0	logfile
✔	8ZX6	60539	2025-06-04	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.006	0.79	0.0	0.05	14.26	0.00	2.631	6.51	1.52	10.6	89.4	0.0	-3.65	0.72	0.35	0.84	5.17	3468	456	6	0	0	0	0	logfile
✔	8ZWJ	60529	2025-06-04	2024-06-13	3.1	2.80	2.16	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.002	0.45	0.0	0.05	15.68	0.00	2.572	2.33	2.96	7.9	92.1	0.0	-2.11	1.29	0.41	0.85	4.61	2760	378	8	6	0	0	0	logfile
✔	8ZW5	60516	2025-06-10	2024-06-12	2.09	3.21	2.22	2.8	0.004	0.83	0.0	0.06	17.37	0.00	2.202	1.98	0.71	1.7	98.3	0.0	0.53	0.90	0.89	4.93	2.9	0.003	0.59	0.0	0.05	16.22	0.00	2.480	2.93	0.95	1.3	98.7	0.0	1.19	0.42	0.87	0.93	4.21	11828	1448	15	0	30	0	0	logfile
✔	9C86	45298	2025-06-12	2024-06-12	2.9	3.44	2.99	3.3	0.004	0.59	0.0	0.04	16.83	0.00	1.947	43.20	4.30	4.8	95.2	0.1	0.38	0.64	0.73	2.64	3.3	0.005	0.86	1.0	0.04	16.93	0.00	1.287	45.40	3.90	7.1	92.9	0.0	-0.28	0.25	0.62	0.73	2.70	14540	1942	5	0	0	0	44	logfile
✔	8ZW0	60514	2025-06-07	2024-06-12	2.72	3.23	2.86	3.2	0.005	0.73	0.0	0.04	13.06	0.01	2.057	7.19	1.55	2.5	96.5	1.1	-0.61	0.63	0.74	2.91	3.2	0.003	0.55	0.0	0.04	15.67	0.00	2.596	5.11	3.76	2.7	97.3	0.0	1.62	1.27	0.52	0.77	3.22	8431	1064	6	0	3	0	0	logfile
✔	8ZWE	60524	2025-06-05	2024-06-12	3.0	3.11	3.00	3.1	0.003	0.54	0.0	0.04	16.06	0.00	2.221	5.07	0.00	3.8	96.1	0.1	-0.05	0.73	0.87	2.28	3.1	0.004	0.59	0.0	0.04	16.65	0.00	2.600	4.83	2.14	4.4	95.6	0.0	0.59	0.74	0.73	0.88	2.47	6465	794	3	0	2	0	0	logfile
✔	9C8R	45308	2025-06-10	2024-06-12	2.83	3.00	2.86	3.0	0.003	0.55	0.0	0.04	15.12	0.00	2.220	3.55	0.95	2.4	97.6	0.0	-0.07	0.70	0.90	4.57	3.0	0.002	0.50	0.0	0.04	15.62	0.00	2.447	2.30	1.26	2.2	97.8	0.0	0.29	0.74	0.73	0.91	4.16	12220	1544	3	0	0	0	0	logfile
✔	8ZW6	60517	2025-06-10	2024-06-12	2.75	2.23	2.81	2.0	0.003	0.63	0.0	0.05	15.48	0.00	2.165	2.11	0.00	1.9	98.1	0.0	0.79	0.84	0.82	4.02	2.0	0.003	0.55	0.0	0.04	16.11	0.00	2.462	2.37	2.05	2.0	98.0	0.0	0.77	0.98	0.84	0.86	3.89	11822	1447	15	0	30	0	0	logfile
✔	8ZW7	60518	2025-06-10	2024-06-12	2.09	3.12	2.17	2.7	0.003	0.60	0.0	0.04	16.85	0.00	2.185	2.32	0.39	1.5	98.5	0.0	1.44	0.88	0.93	4.59	2.7	0.003	0.50	0.0	0.04	15.64	0.00	2.467	1.46	0.08	1.6	98.4	0.0	1.40	0.19	0.88	0.93	4.43	11896	1456	15	0	30	0	0	logfile
✔	8ZW8	60519	2025-06-10	2024-06-12	3.05	3.27	3.06	3.3	0.003	0.60	0.0	0.04	16.41	0.00	2.140	9.12	0.65	3.8	96.2	0.0	1.59	0.63	0.82	1.79	3.3	0.003	0.55	0.0	0.04	16.59	0.00	2.547	6.09	3.25	3.9	96.1	0.0	1.96	0.23	0.63	0.82	2.26	11652	1491	3	0	0	0	0	logfile
✔	9FoR	50628	2025-06-04	2024-06-12	2.75	2.54	2.60	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.004	0.95	0.0	0.05	16.02	0.01	2.621	0.77	1.90	7.9	92.1	0.0	-5.31	0.41	0.53	0.91	6.30	3405	490	10	0	0	0	0	logfile
✔	9FoF	50621	2025-06-04	2024-06-11	2.9	2.55	2.79	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.004	0.89	0.0	0.04	17.53	0.00	2.621	2.01	1.56	7.5	92.5	0.0	-4.72	1.98	0.51	0.89	5.51	4176	600	12	0	0	0	0	logfile
✔	9C7T	45292	2025-06-09	2024-06-11	2.7	3.36	2.77	3.2	0.005	0.54	0.0	0.04	12.31	0.00	1.425	4.01	0.00	2.7	97.3	0.1	0.68	0.84	0.89	3.99	3.2	0.003	0.52	0.0	0.04	14.05	0.00	1.947	3.40	0.93	2.1	97.9	0.0	1.00	0.30	0.84	0.90	3.26	10659	1333	5	0	2	0	0	logfile
✔	9FNS	50609	2025-06-05	2024-06-11	3.5	3.76	3.47	3.8	0.009	1.65	18.0	0.10	18.27	0.02	1.508	11.84	11.00	2.5	97.3	0.1	-2.07	0.66	0.84	2.34	3.8	0.002	0.57	0.0	0.04	15.50	0.00	2.457	4.07	3.05	2.8	97.1	0.1	-0.61	0.49	0.66	0.84	2.62	5542	727	8	0	2	0	0	logfile
✔	8ZVQ	60512	2025-06-07	2024-06-11	3.4	3.70	3.47	3.7	0.005	1.03	0.0	0.05	18.07	0.01	1.532	10.98	0.63	5.5	94.5	0.0	-2.26	0.53	0.59	0.15	3.8	0.004	0.75	0.0	0.04	18.49	0.00	2.504	12.51	5.45	6.2	93.8	0.0	-0.70	1.18	0.52	0.61	0.30	8896	1152	2	0	0	0	0	logfile
✔	8ZVi	60511	2025-06-23	2024-06-11	3.4	3.15	3.20	3.2	0.025	2.40	175.0	0.17	18.10	0.01	2.203	23.98	21.79	7.9	90.0	2.1	-1.56	0.44	0.74	1.33	3.2	0.006	0.76	0.0	0.05	17.88	0.00	2.407	12.87	5.29	7.9	91.9	0.2	-1.28	1.57	0.48	0.84	2.08	28628	3684	14	0	0	0	0	logfile
✔	9C7U	45294	2025-06-05	2024-06-11	3.65	4.10	3.62	4.0	0.003	0.61	0.0	0.04	16.99	0.00	2.138	11.43	0.29	9.2	90.8	0.0	-0.72	0.71	0.83	2.04	4.0	0.004	0.63	0.0	0.04	17.50	0.00	2.541	10.08	5.52	9.2	90.8	0.0	-0.52	0.32	0.69	0.83	2.08	6848	896	4	0	1	0	0	logfile

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