Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZVQ	60512	2025-06-07	2024-06-11	3.4	3.70	3.47	3.7	0.005	1.03	0.0	0.05	18.07	0.01	1.532	10.98	0.63	5.5	94.5	0.0	-2.26	0.53	0.59	0.15	3.8	0.004	0.75	0.0	0.04	18.49	0.00	2.504	12.51	5.45	6.2	93.8	0.0	-0.70	1.18	0.52	0.61	0.30	8896	1152	2	0	0	0	0	logfile
✔	9FNB	50587	2025-06-05	2024-06-10	2.64	2.64	2.35	2.6	0.009	1.41	0.0	0.16	15.19	0.01	2.042	3.52	0.79	6.8	93.2	0.0	-2.48	0.52	0.93	6.97	2.6	0.006	0.72	0.0	0.05	15.91	0.00	2.501	5.49	0.79	6.6	93.4	0.0	-2.36	0.87	0.50	0.92	6.41	4568	540	8	0	16	0	0	logfile
✔	9FNE	50591	2025-06-28	2024-06-10	4.0	4.11	—	4.0	0.002	0.42	0.0	0.04	11.44	0.00	2.145	5.11	0.99	2.5	97.5	0.0	1.56	0.64	0.76	—	4.0	0.003	0.55	0.0	0.04	15.21	0.00	2.368	5.13	1.96	3.4	96.6	0.0	0.72	0.62	0.76	0.84	—	32706	3990	12	86	3	0	0	logfile
✔	9FND	50590	2025-06-05	2024-06-10	4.0	4.20	3.92	4.1	0.002	0.42	0.0	0.04	8.17	0.00	2.291	6.54	0.59	2.6	97.4	0.0	1.57	0.59	0.74	—	4.1	0.003	0.65	0.0	0.04	14.43	0.00	2.340	10.01	2.56	3.4	96.6	0.0	0.05	3.95	0.61	0.74	—	4914	647	2	0	0	0	0	logfile
✔	9FNQ	50602	2025-06-19	2024-06-10	2.1	2.28	2.18	2.3	0.003	0.56	0.0	0.05	10.08	0.00	2.273	2.18	1.16	1.0	99.0	0.0	0.92	0.49	0.76	5.55	2.3	0.003	0.60	0.0	0.05	14.30	0.00	2.612	1.25	1.66	2.5	97.5	0.0	0.95	0.41	0.64	0.86	5.54	22589	2870	7	0	0	0	0	logfile
✔	9C77	45277	2025-06-24	2024-06-10	3.2	3.82	3.28	3.6	0.010	0.84	0.0	0.04	19.23	0.00	1.487	13.57	0.36	5.3	94.5	0.2	0.39	0.84	0.85	1.63	3.6	0.003	0.59	0.0	0.04	18.85	0.00	1.775	9.08	2.11	5.0	94.8	0.2	0.49	0.37	0.85	0.86	1.55	28792	3575	15	12	18	0	0	logfile
✔	9FNP	50601	2025-06-18	2024-06-10	2.2	2.73	2.21	2.6	0.006	0.89	0.0	0.06	11.82	0.01	2.273	1.73	1.19	1.8	98.2	0.0	0.59	0.76	0.90	6.53	2.6	0.002	0.53	0.0	0.04	13.90	0.00	2.538	1.64	0.77	1.6	98.4	0.0	1.35	0.49	0.78	0.91	6.12	21966	2793	7	0	0	0	0	logfile
✔	8ZUF	60483	2025-06-05	2024-06-09	3.31	3.54	3.33	3.6	0.012	1.37	0.0	0.09	13.43	0.01	2.400	1.80	0.24	1.2	98.5	0.3	0.21	0.67	0.73	3.59	3.6	0.003	0.58	0.0	0.04	12.67	0.00	2.549	7.58	1.19	1.2	98.8	0.0	2.03	1.08	0.61	0.72	2.46	5745	770	10	0	19	0	0	logfile
✔	8ZUE	60482	2025-06-08	2024-06-08	3.1	3.29	3.14	3.3	0.003	0.54	0.0	0.04	16.95	0.00	2.118	10.97	0.66	5.8	94.2	0.0	-0.40	0.70	0.79	1.47	3.3	0.003	0.56	0.0	0.04	17.16	0.00	2.429	6.72	3.02	5.4	94.5	0.1	0.01	0.30	0.71	0.80	1.62	9536	1182	2	0	0	0	0	logfile
✔	8ZU8	60481	2025-06-27	2024-06-08	3.9	4.46	4.13	4.3	0.011	1.44	0.0	0.09	23.15	0.01	1.126	14.83	26.27	8.8	90.2	1.0	-3.55	0.56	0.63	0.92	4.3	0.003	0.80	0.0	0.04	18.46	0.00	2.416	9.88	4.46	3.5	96.5	0.0	1.64	1.78	0.62	0.80	1.21	31401	3837	6	0	3	0	0	logfile
✔	9C6Q	45254	2025-06-08	2024-06-08	3.18	3.22	3.07	3.3	0.005	0.64	0.0	0.04	15.43	0.00	2.139	5.91	0.19	6.6	93.4	0.1	-0.07	0.59	0.70	0.92	3.3	0.002	0.52	0.0	0.04	17.18	0.00	2.498	2.72	1.14	6.0	94.0	0.0	0.54	0.65	0.66	0.80	1.92	9841	1190	2	12	0	0	0	logfile
✔	9C6K	45249	2025-06-04	2024-06-07	2.94	3.79	2.95	3.1	0.007	0.76	0.0	0.04	26.38	0.01	1.888	17.91	0.00	0.0	0.0	0.0	—	0.89	0.84	—	3.1	0.006	0.67	0.0	0.04	25.57	0.00	1.888	12.20	0.00	0.0	0.0	0.0	—	0.87	0.89	0.87	—	1745	0	2	80	9	0	0	logfile
✔	9C67	45241	2025-06-23	2024-06-07	3.6	4.61	3.72	4.0	0.003	0.77	0.0	0.04	18.21	0.01	2.010	17.59	0.48	4.8	94.9	0.3	0.02	0.90	0.81	0.70	4.1	0.003	0.73	0.0	0.04	18.25	0.00	2.015	14.77	3.21	4.7	95.2	0.1	0.07	1.18	0.91	0.83	0.76	26783	3392	12	0	6	0	0	logfile
✔	8ZU3	60479	2025-06-28	2024-06-07	3.1	3.75	3.29	3.7	0.009	1.44	21.0	0.09	26.46	0.01	1.111	25.62	42.24	11.6	85.7	2.7	-4.08	0.51	0.54	1.92	3.6	0.003	0.80	0.0	0.04	19.16	0.00	2.519	13.35	5.20	6.8	92.7	0.5	0.20	6.02	0.58	0.80	2.21	32172	3903	12	0	18	0	0	logfile
✔	8ZTY	60476	2025-06-07	2024-06-07	2.85	2.29	2.88	3.4	0.003	0.69	0.0	0.04	21.97	0.01	2.161	14.98	5.14	4.2	95.8	0.0	1.26	0.69	0.69	1.12	2.0	0.004	0.74	0.0	0.04	21.99	0.00	2.326	14.69	6.63	4.8	95.2	0.0	0.24	0.37	0.72	0.71	1.39	8923	928	2	57	0	0	0	logfile
✔	9FMT	50567	2025-06-26	2024-06-07	2.35	2.19	2.45	2.0	0.002	0.47	0.0	0.04	15.44	0.00	2.088	6.17	0.90	2.5	97.5	0.1	1.31	0.85	0.86	3.87	2.0	0.002	0.56	0.0	0.05	16.48	0.00	2.462	6.07	1.76	2.5	97.5	0.1	0.93	0.90	0.85	0.86	3.82	30144	3864	6	0	0	0	0	logfile
✔	9C6B	45243	2025-06-09	2024-06-07	2.6	3.50	2.70	3.2	0.003	0.47	0.0	0.04	11.99	0.00	1.427	4.87	0.00	2.4	97.5	0.1	0.89	0.85	0.88	3.31	3.2	0.002	0.55	0.0	0.04	13.85	0.00	2.068	3.93	0.25	2.6	97.4	0.0	1.06	0.32	0.84	0.87	2.97	10737	1344	5	0	2	0	0	logfile
✔	9C6F	45245	2025-06-24	2024-06-07	3.6	3.89	3.74	3.8	0.005	0.79	0.0	0.05	18.57	0.01	2.031	17.31	1.26	5.9	93.4	0.7	-0.16	0.73	0.75	0.97	3.8	0.003	0.71	0.0	0.04	18.56	0.00	2.026	11.73	2.98	5.1	94.7	0.2	0.16	0.43	0.78	0.79	0.99	28361	3588	12	0	9	0	0	logfile
✔	9C6i	45247	2025-06-06	2024-06-07	2.56	3.19	2.64	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	9C6o	45253	2025-06-05	2024-06-07	2.77	3.03	2.81	3.1	0.012	1.29	0.0	0.09	12.61	0.01	2.373	1.47	0.00	2.2	97.5	0.3	-0.10	0.68	0.75	4.18	3.1	0.003	0.65	0.0	0.04	14.64	0.00	2.580	4.32	1.11	1.6	98.3	0.1	1.64	0.54	0.65	0.78	3.88	6086	777	6	0	12	0	0	logfile

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