Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C6o	45253	2025-06-05	2024-06-07	2.77	3.03	2.81	3.1	0.012	1.29	0.0	0.09	12.61	0.01	2.373	1.47	0.00	2.2	97.5	0.3	-0.10	0.68	0.75	4.18	3.1	0.003	0.65	0.0	0.04	14.64	0.00	2.580	4.32	1.11	1.6	98.3	0.1	1.64	0.54	0.65	0.78	3.88	6086	777	6	0	12	0	0	logfile
✔	8ZTR	60470	2025-06-12	2024-06-07	3.26	3.32	3.26	3.3	0.005	0.81	1.0	0.04	17.60	0.00	2.195	7.58	0.45	4.8	95.2	0.1	-0.75	0.61	0.59	1.19	3.3	0.003	0.64	0.0	0.04	18.47	0.00	2.307	10.75	2.98	4.4	95.6	0.0	-0.36	1.13	0.62	0.61	0.88	14072	1694	4	0	0	0	0	logfile
✔	9C6J	45248	2025-06-06	2024-06-07	2.41	3.08	2.54	2.9	0.008	0.79	0.0	0.05	25.12	0.01	1.871	10.86	0.00	0.0	0.0	0.0	—	0.87	0.89	—	2.9	0.008	0.66	0.0	0.04	24.42	0.01	1.888	8.06	0.00	0.0	0.0	0.0	—	0.24	0.86	0.90	—	8345	0	2	387	21	0	0	logfile
✔	8ZU3	60479	2025-06-28	2024-06-07	3.1	3.75	3.29	3.7	0.009	1.44	21.0	0.09	26.46	0.01	1.111	25.62	42.24	11.6	85.7	2.7	-4.08	0.51	0.54	1.92	3.6	0.003	0.80	0.0	0.04	19.16	0.00	2.519	13.35	5.20	6.8	92.7	0.5	0.20	6.02	0.58	0.80	2.21	32172	3903	12	0	18	0	0	logfile
✔	9C6i	45247	2025-06-06	2024-06-07	2.56	3.19	2.64	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	9C6F	45245	2025-06-24	2024-06-07	3.6	3.89	3.74	3.8	0.005	0.79	0.0	0.05	18.57	0.01	2.031	17.31	1.26	5.9	93.4	0.7	-0.16	0.73	0.75	0.97	3.8	0.003	0.71	0.0	0.04	18.56	0.00	2.026	11.73	2.98	5.1	94.7	0.2	0.16	0.43	0.78	0.79	0.99	28361	3588	12	0	9	0	0	logfile
✔	9FMT	50567	2025-06-26	2024-06-07	2.35	2.19	2.45	2.0	0.002	0.47	0.0	0.04	15.44	0.00	2.088	6.17	0.90	2.5	97.5	0.1	1.31	0.85	0.86	3.87	2.0	0.002	0.56	0.0	0.05	16.48	0.00	2.462	6.07	1.76	2.5	97.5	0.1	0.93	0.90	0.85	0.86	3.82	30144	3864	6	0	0	0	0	logfile
✔	9C5C	45214	2025-06-10	2024-06-06	3.6	2.97	3.61	3.9	0.004	0.73	0.0	0.04	15.74	0.00	2.202	20.64	0.08	2.7	97.3	0.0	0.79	0.67	0.57	0.91	3.9	0.004	0.99	1.0	0.05	17.38	0.00	2.369	18.65	3.21	3.3	96.7	0.0	1.21	1.10	0.68	0.68	0.85	11364	1429	4	0	0	0	0	logfile
✔	9C5A	45209	2025-06-14	2024-06-06	4.2	3.06	4.21	4.2	0.014	1.48	0.0	0.07	12.26	0.01	1.887	4.97	0.45	3.5	96.3	0.2	0.19	0.66	0.71	—	4.1	0.003	0.66	0.0	0.04	13.59	0.00	1.916	9.29	0.00	3.1	96.9	0.0	1.38	2.51	0.65	0.71	—	15806	1978	10	0	4	0	0	logfile
✔	9C5Q	45218	2025-06-11	2024-06-06	3.1	3.69	3.18	3.5	0.002	0.57	0.0	0.04	19.49	0.00	2.031	7.40	0.65	8.4	91.5	0.1	-2.00	0.76	0.81	1.49	3.5	0.004	0.63	0.0	0.04	19.66	0.00	2.560	5.85	4.44	10.6	89.3	0.1	-1.22	0.38	0.72	0.78	1.34	12324	1550	4	28	0	0	0	logfile
✔	9FML	50562	2025-06-19	2024-06-06	2.2	2.22	2.20	2.2	0.003	0.59	0.0	0.05	13.87	0.00	2.265	3.46	1.57	1.7	98.3	0.0	0.87	0.76	0.85	6.06	2.2	0.003	0.56	0.0	0.05	14.69	0.00	2.581	2.56	1.69	1.8	98.2	0.0	0.84	0.22	0.76	0.86	5.86	23261	2954	7	0	0	0	0	logfile
✔	9C5B	45213	2025-06-15	2024-06-06	4.5	2.95	4.37	4.3	0.013	1.36	0.0	0.07	12.25	0.01	1.940	5.09	0.11	2.1	97.7	0.2	0.47	0.64	0.64	—	4.3	0.003	0.65	0.0	0.04	13.55	0.00	1.853	10.92	0.00	2.9	97.1	0.0	1.30	1.35	0.68	0.66	—	16874	2114	9	0	4	0	0	logfile
✔	9C5R	45221	2025-06-05	2024-06-06	2.61	2.41	2.39	2.4	0.006	0.79	0.0	0.05	13.54	0.00	2.346	7.09	0.00	7.7	92.3	0.0	-2.98	0.52	0.82	2.69	2.4	0.004	0.66	0.0	0.05	17.19	0.00	2.629	4.65	7.46	7.9	92.1	0.0	-3.14	0.39	0.55	0.84	2.64	5840	840	10	0	0	0	0	logfile
✔	8ZSZ	60435	2025-06-05	2024-06-06	3.59	3.78	3.46	3.7	0.027	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.7	0.014	0.69	0.0	0.04	16.53	0.00	1.827	15.42	4.04	2.6	97.4	0.0	1.22	0.77	0.59	0.75	0.91	4754	630	4	0	8	0	0	logfile
✔	9C58	45207	2025-06-06	2024-06-06	4.7	4.87	4.70	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.004	0.71	0.0	0.04	6.58	0.00	1.924	2.25	0.00	8.8	91.2	0.0	-1.22	1.63	0.76	0.72	—	7954	1590	6	0	2	0	0	logfile
✔	8ZRR	60403	2025-06-04	2024-06-05	3.61	2.82	3.10	2.7	0.008	0.99	0.0	0.05	16.46	0.01	1.345	8.98	3.81	3.5	95.7	0.8	0.51	0.58	0.70	1.24	2.7	0.003	0.79	0.0	0.05	16.55	0.00	2.386	8.60	4.26	2.8	97.2	0.0	1.43	0.75	0.59	0.73	1.72	4065	516	4	0	0	0	0	logfile
✔	8ZRW	60407	2025-06-10	2024-06-05	2.29	2.41	2.31	2.4	0.010	0.97	0.0	0.05	14.59	0.00	1.988	2.13	0.00	1.6	98.4	0.0	-1.43	0.54	0.69	4.87	2.4	0.002	0.51	0.0	0.04	17.01	0.00	2.535	2.83	1.87	2.0	98.0	0.0	1.40	1.35	0.75	0.89	5.33	12170	1560	18	0	8	12	0	logfile
✔	9FLU	50539	2025-06-14	2024-06-05	3.4	3.67	3.38	3.6	0.018	1.52	0.0	0.08	8.06	0.02	2.212	3.67	0.00	1.2	98.8	0.0	1.79	0.76	0.82	3.85	3.6	0.003	0.53	0.0	0.05	10.97	0.00	2.432	5.00	3.13	1.1	98.9	0.0	1.79	1.21	0.70	0.84	3.75	16520	2324	7	0	0	0	0	logfile
✔	8ZRP	60401	2025-06-14	2024-06-05	3.32	3.58	3.42	3.6	0.004	0.64	0.0	0.05	22.06	0.01	2.096	5.56	0.89	6.1	93.8	0.1	-0.60	0.67	0.84	2.35	3.6	0.003	0.59	0.0	0.04	17.17	0.00	2.491	4.13	3.56	6.0	93.9	0.1	0.28	0.37	0.70	0.85	2.05	16042	1919	19	0	26	5	0	logfile
✔	8ZRU	60405	2025-06-10	2024-06-05	2.18	2.33	2.24	2.3	0.004	0.59	5.0	0.05	15.38	0.00	2.230	6.72	1.06	2.2	97.7	0.1	-1.25	0.51	0.68	5.13	2.3	0.004	0.60	0.0	0.05	16.73	0.00	2.511	4.41	1.30	2.0	98.0	0.0	0.73	1.26	0.76	0.88	5.51	11816	1560	8	0	2	0	0	logfile

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