Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZRP	60401	2025-06-14	2024-06-05	3.32	3.58	3.42	3.6	0.004	0.64	0.0	0.05	22.06	0.01	2.096	5.56	0.89	6.1	93.8	0.1	-0.60	0.67	0.84	2.35	3.6	0.003	0.59	0.0	0.04	17.17	0.00	2.491	4.13	3.56	6.0	93.9	0.1	0.28	0.37	0.70	0.85	2.05	16042	1919	19	0	26	5	0	logfile
✔	8ZRW	60407	2025-06-10	2024-06-05	2.29	2.41	2.31	2.4	0.010	0.97	0.0	0.05	14.59	0.00	1.988	2.13	0.00	1.6	98.4	0.0	-1.43	0.54	0.69	4.87	2.4	0.002	0.51	0.0	0.04	17.01	0.00	2.535	2.83	1.87	2.0	98.0	0.0	1.40	1.35	0.75	0.89	5.33	12170	1560	18	0	8	12	0	logfile
✔	9FLS	50538	2025-06-15	2024-06-05	3.4	3.63	3.39	3.6	0.018	1.59	7.0	0.08	9.43	0.01	2.285	6.79	0.00	4.2	95.8	0.0	0.44	0.49	0.63	3.84	3.6	0.005	0.64	0.0	0.04	11.81	0.00	2.328	4.28	3.23	2.8	97.2	0.0	0.14	1.62	0.72	0.86	4.02	16604	2359	7	0	0	0	0	logfile
✔	9FLW	50541	2025-06-23	2024-06-05	3.7	3.95	3.71	3.9	0.018	1.78	7.0	0.09	8.81	0.01	2.012	7.93	0.00	2.0	98.0	0.0	1.57	0.65	0.63	3.51	3.9	0.005	0.70	0.0	0.05	13.72	0.00	2.466	6.52	2.24	4.3	95.7	0.0	0.62	0.69	0.79	0.86	3.19	26180	3556	7	0	0	0	0	logfile
✔	8ZSB	60410	2025-06-05	2024-06-05	3.26	3.46	3.05	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.007	0.55	0.0	0.04	16.03	0.00	1.978	8.17	1.52	3.7	96.3	0.0	2.29	0.51	0.60	0.82	2.45	4798	614	4	0	2	0	0	logfile
✔	9FLU	50539	2025-06-14	2024-06-05	3.4	3.67	3.38	3.6	0.018	1.52	0.0	0.08	8.06	0.02	2.212	3.67	0.00	1.2	98.8	0.0	1.79	0.76	0.82	3.85	3.6	0.003	0.53	0.0	0.05	10.97	0.00	2.432	5.00	3.13	1.1	98.9	0.0	1.79	1.21	0.70	0.84	3.75	16520	2324	7	0	0	0	0	logfile
✔	8ZSJ	60417	2025-06-06	2024-06-05	2.8	3.25	2.87	3.2	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.003	0.56	0.0	0.04	15.65	0.00	2.495	6.61	1.85	2.8	97.2	0.0	1.08	0.99	0.62	0.85	3.35	8118	1035	6	0	1	4	0	logfile
✔	8ZSP	60423	2025-06-06	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.003	0.63	0.0	0.04	16.24	0.00	2.535	8.34	1.51	2.6	97.4	0.0	0.67	0.91	0.76	0.79	2.24	8076	1033	6	0	1	0	0	logfile
✔	8ZRT	60404	2025-06-04	2024-06-05	3.62	3.79	3.42	3.8	0.003	0.70	0.0	0.04	16.25	0.01	2.227	13.78	0.81	3.1	96.9	0.0	0.00	0.47	0.72	1.94	3.8	0.003	0.73	0.0	0.04	16.79	0.01	2.546	13.13	7.26	4.8	95.2	0.0	1.04	0.32	0.47	0.72	2.05	2322	303	2	0	0	0	0	logfile
✔	8ZRH	60396	2025-06-06	2024-06-04	3.6	2.84	3.63	2.1	0.007	0.93	0.0	0.05	16.05	0.01	2.383	9.08	1.82	3.8	95.9	0.3	0.45	0.61	0.67	0.80	2.2	0.004	0.84	0.0	0.05	17.13	0.01	2.355	11.48	3.86	5.1	94.8	0.1	-0.05	1.70	0.63	0.72	1.24	8036	1019	8	0	0	0	0	logfile
✔	9C4N	45191	2025-06-04	2024-06-04	2.9	2.74	—	2.9	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	2.9	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	8ZRA	60394	2025-06-10	2024-06-04	3.32	3.61	3.17	3.7	0.006	0.77	0.0	0.05	15.35	0.01	2.251	16.83	0.00	10.4	89.6	0.0	-4.04	0.66	0.82	4.11	3.7	0.004	0.67	0.0	0.05	16.90	0.01	2.554	9.31	4.30	5.3	94.7	0.0	-2.47	0.56	0.67	0.85	4.51	11772	1422	18	0	0	0	0	logfile
✔	9C4C	45181	2025-06-10	2024-06-04	3.09	3.22	3.10	3.2	0.004	0.71	0.0	0.04	22.35	0.00	1.733	4.00	0.00	0.7	99.3	0.0	-1.20	0.68	0.74	2.96	3.2	0.004	0.98	0.0	0.04	22.95	0.00	1.996	2.87	0.81	1.7	98.3	0.0	1.74	1.13	0.69	0.74	2.15	11490	542	10	77	8	0	5414	logfile
✔	9C4D	45182	2025-06-11	2024-06-04	4.17	4.62	4.15	4.3	0.002	0.48	0.0	0.03	22.14	0.00	2.085	9.43	2.34	0.7	99.3	0.0	4.02	0.82	0.73	—	4.3	0.003	0.58	0.0	0.03	22.92	0.00	1.412	10.02	0.00	1.2	98.8	0.0	2.61	1.88	0.83	0.77	—	12493	1120	18	154	16	0	0	logfile
✔	8ZRK	60399	2025-06-14	2024-06-04	2.82	3.00	2.84	3.0	0.004	0.65	0.0	0.04	18.74	0.00	2.191	5.16	0.95	4.1	95.9	0.0	0.53	0.58	0.79	2.90	3.0	0.003	0.53	0.0	0.04	18.19	0.00	2.307	2.90	2.25	4.4	95.6	0.0	1.07	0.26	0.57	0.80	2.86	15895	1032	6	0	1	0	7877	logfile
✔	9FL7	50532	2025-06-08	2024-06-04	4.3	4.62	4.34	4.4	0.005	0.97	0.0	0.05	14.58	0.00	2.208	9.45	0.43	2.8	97.2	0.0	-0.39	0.85	0.79	—	4.4	0.003	0.64	0.0	0.05	13.28	0.00	2.378	8.23	0.00	2.9	97.1	0.0	-0.62	0.60	0.86	0.79	—	8969	1134	5	0	4	0	0	logfile
✔	9C4o	45192	2025-06-09	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	2.2	0.003	0.58	0.0	0.04	16.65	0.00	2.143	4.38	0.92	2.7	97.3	0.0	-0.09	0.86	0.60	0.80	6.68	10166	661	2	0	2	111	4883	logfile
✔	9C4E	45183	2025-06-13	2024-06-04	2.73	3.23	2.73	3.1	0.003	0.53	0.0	0.04	16.12	0.00	2.218	6.74	0.82	2.0	98.0	0.0	0.56	0.61	0.76	3.24	3.1	0.005	0.57	0.0	0.05	16.55	0.00	2.486	5.71	1.20	1.9	98.1	0.0	0.44	1.06	0.68	0.83	3.28	14760	1932	4	0	0	0	0	logfile
✔	8ZR5	60392	2025-06-14	2024-06-04	3.31	3.53	3.30	3.6	0.005	0.71	0.0	0.04	15.90	0.00	2.192	5.13	0.23	3.0	97.0	0.0	-0.42	0.59	0.82	2.74	3.6	0.003	0.51	0.0	0.04	16.44	0.00	2.420	2.96	1.49	1.8	98.2	0.0	1.05	0.97	0.62	0.84	2.31	16195	1044	6	0	1	0	8043	logfile
✔	9C4F	45184	2025-06-18	2024-06-04	3.2	2.33	3.05	2.3	0.005	0.82	0.0	0.05	13.07	0.01	1.661	9.81	0.30	2.5	97.4	0.1	-0.62	0.39	0.75	4.46	2.2	0.004	0.64	0.0	0.04	16.18	0.00	2.520	7.26	2.34	2.0	97.9	0.0	-0.40	0.66	0.38	0.80	4.08	21560	2774	6	0	0	0	0	logfile

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