Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZQQ	60388	2025-06-04	2024-06-03	2.5	2.79	2.52	2.8	0.003	0.65	0.0	0.04	16.30	0.00	2.211	2.21	0.25	2.5	97.5	0.0	1.76	0.64	0.87	3.26	2.8	0.003	0.56	0.0	0.04	14.71	0.00	2.205	2.33	1.51	1.9	98.1	0.0	2.20	0.87	0.63	0.86	2.84	3836	492	3	0	6	0	0	logfile
✔	9C44	45174	2025-06-22	2024-06-03	2.6	2.77	2.70	2.7	0.010	1.30	0.0	0.08	11.22	0.01	2.477	0.83	0.29	2.0	98.0	0.0	0.70	0.74	0.80	4.72	2.7	0.004	0.60	0.0	0.05	12.29	0.00	2.471	2.56	1.17	1.2	98.8	0.0	1.16	0.43	0.74	0.81	4.52	26337	3768	24	0	60	0	0	logfile
✔	9FKP	50524	2025-06-05	2024-06-03	3.72	3.74	3.09	3.3	0.002	0.50	0.0	0.04	8.23	0.00	2.202	7.06	1.86	4.0	96.0	0.0	-0.16	0.77	0.58	0.79	3.3	0.003	0.66	0.0	0.05	13.53	0.00	2.452	12.30	4.01	3.3	96.7	0.0	-1.03	0.75	0.78	0.62	1.30	6092	769	5	0	0	0	0	logfile
✔	9C45	45175	2025-06-04	2024-06-03	3.2	3.43	3.22	3.4	0.011	1.27	0.0	0.08	11.88	0.01	2.507	0.81	0.00	2.5	97.5	0.0	1.45	0.70	0.85	5.90	3.4	0.004	0.61	0.0	0.05	12.12	0.00	2.576	2.28	1.97	1.7	98.3	0.0	0.57	0.95	0.69	0.90	5.82	3900	496	6	0	9	0	0	logfile
✔	8ZQo	60386	2025-06-04	2024-06-03	2.8	2.96	2.76	3.0	0.004	0.76	0.0	0.05	17.77	0.01	2.155	4.33	1.20	1.8	98.2	0.0	1.88	0.66	0.88	2.87	3.0	0.002	0.53	0.0	0.04	15.38	0.00	2.211	1.98	0.48	1.9	98.1	0.0	2.79	0.88	0.62	0.87	2.37	4032	515	3	0	7	1	0	logfile
✔	8ZQR	60389	2025-06-04	2024-06-03	3.6	3.82	3.65	3.9	0.005	0.94	2.0	0.06	18.43	0.01	2.229	8.96	0.76	5.8	94.2	0.0	-0.86	0.60	0.80	1.77	3.9	0.003	0.71	0.0	0.04	16.91	0.00	2.578	6.33	2.80	3.8	96.2	0.0	0.81	1.03	0.54	0.80	0.77	3778	486	2	0	3	0	0	logfile
✔	9C48	45177	2025-06-07	2024-06-03	2.4	2.10	2.43	1.8	0.006	0.93	0.0	0.06	16.10	0.00	2.232	5.54	0.00	2.7	97.3	0.0	-0.49	0.77	0.84	4.87	1.8	0.005	0.66	0.0	0.05	14.92	0.00	2.062	2.40	0.47	3.2	96.8	0.0	0.06	0.36	0.79	0.87	5.49	8481	993	18	0	36	249	0	logfile
✔	9C4B	45180	2025-06-05	2024-06-03	3.4	3.78	3.54	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.55	0.0	0.04	17.03	0.00	2.394	7.86	2.37	7.0	92.8	0.3	-0.42	0.52	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	9FK5	50519	2025-06-05	2024-06-02	4.1	4.17	3.38	3.5	0.003	0.52	0.0	0.04	9.26	0.00	2.030	7.29	2.25	5.2	94.8	0.0	-0.88	0.78	0.61	—	3.6	0.003	0.63	0.0	0.05	12.00	0.00	2.465	7.47	0.00	3.4	96.4	0.1	-1.06	0.91	0.80	0.65	—	5765	735	5	0	0	0	0	logfile
✔	8ZQE	60384	2025-06-07	2024-06-02	2.9	2.31	3.03	2.1	0.004	0.71	0.0	0.05	13.70	0.00	2.169	12.51	0.21	4.5	95.5	0.0	-0.15	0.74	0.75	2.45	2.1	0.003	0.69	0.0	0.04	17.21	0.00	2.503	10.04	2.33	3.5	96.5	0.0	0.06	1.33	0.77	0.81	2.42	8767	1131	6	0	0	0	0	logfile
✔	8ZQ9	60379	2025-06-05	2024-06-01	2.87	3.10	2.91	3.0	0.007	1.13	0.0	0.11	23.71	0.01	2.272	12.58	2.11	6.5	93.5	0.0	-1.99	0.61	0.64	1.54	3.0	0.003	0.63	0.0	0.03	22.99	0.00	2.501	12.04	5.01	5.3	94.7	0.0	-0.20	1.01	0.69	0.77	2.00	6211	433	3	125	1	0	0	logfile
✔	9FJP	50508	2025-06-21	2024-05-31	3.2	3.58	3.26	3.4	0.002	0.49	0.0	0.04	11.31	0.00	1.915	2.80	0.74	2.8	97.2	0.0	0.82	0.81	0.84	2.59	3.4	0.004	0.73	1.0	0.04	14.88	0.00	2.256	5.63	2.32	2.4	97.6	0.0	0.74	1.11	0.82	0.87	2.06	25376	3228	8	10	3	0	0	logfile
✔	9FJo	50507	2025-06-10	2024-05-31	3.05	3.39	3.10	3.4	0.002	0.52	0.0	0.04	15.85	0.00	2.165	5.36	0.24	2.1	97.9	0.0	-0.37	0.68	0.84	2.73	3.4	0.003	0.58	0.0	0.04	16.45	0.00	2.450	5.49	1.71	2.8	97.2	0.0	0.91	0.29	0.67	0.83	2.41	11466	1452	8	0	8	0	0	logfile
✔	9C3C	45165	2025-06-17	2024-05-31	4.3	4.51	4.30	4.4	0.004	0.72	0.0	0.05	15.49	0.00	2.212	10.13	0.00	3.7	96.3	0.0	-0.49	0.71	0.67	—	4.4	0.003	0.70	0.0	0.05	13.24	0.00	2.467	13.13	0.00	4.9	95.1	0.0	-0.75	0.81	0.59	0.49	—	19475	2458	19	0	25	0	0	logfile
✔	9FJY	50517	2025-06-14	2024-05-31	3.79	4.12	3.87	4.0	0.004	0.66	0.0	0.04	18.47	0.00	1.723	9.49	0.41	1.7	98.3	0.0	0.26	0.82	0.83	2.23	4.0	0.003	0.70	0.0	0.05	16.83	0.00	2.012	9.02	3.70	2.1	97.9	0.0	0.24	0.97	0.82	0.83	1.78	15968	2010	22	0	24	0	0	logfile
✔	9C3E	45166	2025-06-09	2024-05-31	3.5	4.21	3.49	3.9	0.005	0.96	0.0	0.05	15.76	0.01	2.140	16.01	1.92	4.2	95.7	0.2	-0.18	0.74	0.79	2.36	3.9	0.004	0.73	0.0	0.05	16.03	0.00	2.448	10.51	4.20	4.8	95.1	0.1	0.37	0.54	0.74	0.80	2.07	10619	1356	15	0	13	0	0	logfile
✔	9C39	45162	2025-06-18	2024-05-31	3.4	3.79	3.39	3.7	0.004	0.84	0.0	0.05	17.05	0.01	2.097	11.32	1.22	8.8	90.1	1.0	-1.71	0.34	0.77	1.16	3.7	0.005	0.88	1.0	0.05	17.14	0.00	1.708	11.07	4.41	8.3	91.1	0.6	-1.10	1.46	0.36	0.88	2.42	22110	2953	16	0	0	0	0	logfile
✔	8ZPS	60353	2025-06-07	2024-05-31	2.97	2.45	2.76	3.0	0.003	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.010	0.65	0.0	0.04	15.00	0.00	2.338	7.33	2.66	3.6	96.4	0.0	0.81	1.41	0.63	0.79	2.40	8848	1135	7	0	1	0	0	logfile
✔	9C2T	45160	2025-06-22	2024-05-31	3.1	3.15	2.95	3.1	0.003	0.53	0.0	0.04	15.09	0.00	2.126	8.87	1.43	2.1	97.9	0.0	-0.55	0.40	0.88	4.45	3.1	0.003	0.53	0.0	0.04	15.62	0.00	2.453	7.74	2.24	2.2	97.8	0.0	-0.60	0.30	0.40	0.88	4.19	26970	3461	7	0	0	0	0	logfile
✔	8ZPW	60365	2025-06-08	2024-05-31	3.0	3.15	2.94	3.2	0.003	0.53	0.0	0.04	15.06	0.00	2.043	6.26	1.19	2.0	98.0	0.0	1.19	0.78	0.87	3.54	3.2	0.003	0.56	0.0	0.04	15.89	0.00	2.525	6.97	1.29	1.8	98.2	0.0	1.25	0.40	0.78	0.87	3.14	9252	1145	4	0	4	0	0	logfile

• ← previous
• Page 51 of 660
• next →