Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZMP	60253	2025-06-22	2024-05-23	3.38	3.65	3.40	3.6	0.005	0.74	3.0	0.05	16.90	0.00	2.236	7.35	5.41	4.7	95.3	0.0	-1.31	0.79	0.86	2.22	3.6	0.003	0.65	0.0	0.05	15.19	0.00	2.471	4.50	4.37	3.3	96.7	0.0	-0.57	0.31	0.79	0.86	2.40	26175	3198	33	0	90	0	0	logfile
✔	9BYH	45031	2025-06-10	2024-05-23	2.53	2.70	2.54	2.7	0.002	0.50	0.0	0.04	18.81	0.00	2.047	9.86	0.89	1.9	98.1	0.0	0.89	0.72	0.84	4.29	2.7	0.003	0.55	0.0	0.04	18.91	0.00	2.059	8.72	2.03	1.7	98.3	0.0	0.84	0.22	0.69	0.83	4.29	11524	1394	6	2	6	0	0	logfile
✔	8ZMH	60247	2025-06-04	2024-05-23	4.6	8.01	4.96	6.0	0.010	1.67	0.0	0.08	27.49	0.01	1.595	16.28	0.00	0.0	0.0	0.0	—	0.89	0.71	—	6.5	0.008	1.14	0.0	0.06	29.73	0.01	1.078	85.81	0.00	0.0	0.0	0.0	—	3.65	0.93	0.86	—	3594	0	1	169	0	0	0	logfile
✔	9BYi	45034	2025-06-05	2024-05-23	2.95	3.95	2.96	3.6	0.005	0.65	0.0	0.04	15.74	0.00	2.279	2.89	0.00	5.8	94.2	0.0	4.10	0.73	0.86	2.66	3.6	0.003	0.59	0.0	0.03	15.22	0.00	2.505	1.93	1.80	5.4	94.6	0.0	5.09	1.80	0.66	0.84	2.36	4505	524	4	0	31	0	0	logfile
✔	8ZMK	60250	2025-06-08	2024-05-23	3.85	6.58	3.91	7.3	0.002	0.42	0.0	0.03	18.72	0.00	2.215	6.89	2.27	10.4	89.0	0.6	-2.54	0.70	0.33	-0.27	7.3	0.004	0.95	1.0	0.04	20.31	0.00	2.117	18.74	2.27	5.9	94.1	0.0	-0.59	1.91	0.80	0.69	-0.78	9204	698	3	169	0	0	0	logfile
✔	9BXX	45014	2025-06-14	2024-05-23	4.26	4.20	3.71	3.9	0.008	0.83	3.0	0.06	17.54	0.00	1.912	9.87	1.40	2.1	97.9	0.0	0.57	0.64	0.56	—	3.9	0.004	0.76	0.0	0.05	14.69	0.00	1.790	17.29	0.00	3.1	96.9	0.0	0.41	2.32	0.68	0.72	—	16678	2026	9	2	10	0	0	logfile
✔	8ZMJ	60249	2025-06-07	2024-05-23	3.73	5.72	3.90	3.9	0.004	0.68	0.0	0.05	21.61	0.00	2.205	17.11	0.49	2.7	97.3	0.0	0.66	0.87	0.65	1.14	4.0	0.003	0.68	0.0	0.03	22.01	0.00	2.025	18.79	2.27	2.3	97.7	0.0	0.92	1.93	0.92	0.84	0.66	9184	696	3	169	0	0	0	logfile
✔	9BY0	45016	2025-06-14	2024-05-23	4.19	4.15	3.60	3.9	0.008	0.84	4.0	0.06	17.53	0.00	1.912	10.11	1.40	2.1	97.9	0.0	0.56	0.67	0.62	—	3.9	0.006	0.80	0.0	0.05	14.73	0.00	1.750	19.65	0.00	3.2	96.8	0.0	0.45	2.54	0.71	0.76	—	16678	2026	9	2	10	0	0	logfile
✔	9BX2	44991	2025-06-14	2024-05-22	3.79	3.73	3.24	3.5	0.008	0.71	3.0	0.06	17.17	0.00	1.912	17.40	1.40	1.6	98.4	0.0	1.09	0.70	0.70	2.90	3.5	0.004	0.79	0.0	0.05	18.14	0.00	1.940	14.54	2.10	2.3	97.7	0.0	0.80	1.46	0.69	0.79	2.63	15954	1940	8	0	10	0	0	logfile
✔	9BX8	44999	2025-06-14	2024-05-22	3.59	3.67	3.12	3.5	0.008	0.71	3.0	0.06	17.17	0.00	1.912	17.05	1.46	1.6	98.4	0.0	1.10	0.71	0.71	2.43	3.5	0.004	0.77	0.0	0.04	17.82	0.00	1.933	14.19	1.75	1.8	98.2	0.0	0.86	1.44	0.70	0.81	2.37	15954	1940	8	0	10	0	0	logfile
✔	9BXT	45011	2025-06-10	2024-05-22	2.88	2.20	2.92	2.9	0.007	0.66	0.0	0.04	18.27	0.00	2.118	12.09	0.99	2.4	97.6	0.0	0.82	0.80	0.79	3.43	2.0	0.003	0.63	0.0	0.04	18.61	0.00	2.233	9.34	2.52	2.9	97.1	0.0	0.63	1.20	0.79	0.80	3.35	12164	1476	7	2	6	0	0	logfile
✔	9BXS	45010	2025-06-14	2024-05-22	3.37	3.77	3.03	3.5	0.008	0.83	3.0	0.06	17.55	0.00	1.912	9.35	1.34	2.1	97.9	0.0	0.58	0.68	0.67	2.67	3.5	0.003	0.66	0.0	0.04	17.66	0.00	1.880	10.36	2.24	2.6	97.4	0.0	1.20	1.28	0.68	0.81	2.58	16678	2026	9	2	10	0	0	logfile
✔	9BX6	44995	2025-06-14	2024-05-22	3.44	3.61	3.02	3.4	0.008	0.71	3.0	0.06	17.18	0.00	1.911	17.14	1.40	1.6	98.4	0.0	1.10	0.70	0.72	3.32	3.4	0.005	0.73	0.0	0.05	17.97	0.00	1.889	11.62	2.16	1.9	98.1	0.0	1.05	1.42	0.70	0.83	2.95	15954	1940	8	0	10	0	0	logfile
✔	9BXC	45004	2025-06-10	2024-05-22	2.76	2.99	2.80	3.0	0.003	0.54	0.0	0.04	18.61	0.00	2.118	11.97	0.81	2.5	97.5	0.0	0.85	0.70	0.82	4.04	3.0	0.003	0.55	0.0	0.04	18.52	0.00	2.255	9.41	1.79	3.2	96.8	0.0	0.46	1.05	0.64	0.78	3.79	11496	1390	6	2	6	0	0	logfile
✔	9BWX	44985	2025-06-14	2024-05-22	2.91	3.39	2.62	3.1	0.008	0.71	3.0	0.06	17.18	0.00	1.912	16.99	1.34	1.6	98.4	0.0	1.09	0.71	0.72	3.67	3.1	0.003	0.63	0.0	0.04	17.45	0.00	1.979	8.07	1.75	1.4	98.6	0.0	1.68	1.92	0.69	0.84	3.28	15954	1940	8	0	10	0	0	logfile
✔	9BX9	45000	2025-06-14	2024-05-22	3.79	3.73	3.26	3.5	0.008	0.71	3.0	0.06	17.18	0.00	1.911	17.14	1.40	1.6	98.4	0.0	1.09	0.68	0.67	2.65	3.5	0.003	0.70	0.0	0.04	17.52	0.00	1.897	11.87	1.98	2.3	97.7	0.0	1.03	1.40	0.71	0.80	2.35	15954	1940	8	0	10	0	0	logfile
✔	9BX3	44992	2025-06-14	2024-05-22	3.9	3.76	3.33	3.6	0.008	0.71	3.0	0.06	17.18	0.00	1.912	17.02	1.34	1.6	98.4	0.0	1.09	0.68	0.66	2.16	3.6	0.005	0.81	0.0	0.05	17.78	0.00	1.844	16.83	2.57	2.2	97.8	0.0	0.51	2.74	0.71	0.78	1.61	15954	1940	8	0	10	0	0	logfile
✔	9BXQ	45008	2025-06-06	2024-05-22	3.1	3.01	2.96	3.2	0.011	1.84	0.0	0.09	10.87	0.01	1.454	27.94	0.00	6.7	93.3	0.0	-2.37	0.30	0.68	3.66	3.2	0.003	0.60	0.0	0.05	13.43	0.00	2.481	3.35	0.00	4.2	95.8	0.0	-2.83	1.24	0.34	0.78	4.76	7182	462	6	0	0	0	3654	logfile
✔	9FFB	50353	2025-06-15	2024-05-22	3.59	4.32	3.45	3.6	0.013	0.95	0.0	0.06	20.15	0.01	2.015	13.43	0.16	6.4	93.5	0.0	-0.48	0.87	0.81	0.50	3.6	0.013	0.83	0.0	0.04	20.41	0.00	2.006	12.77	4.12	6.0	93.9	0.0	-0.14	0.37	0.87	0.82	0.40	17255	2066	4	42	0	0	0	logfile
✔	9BXR	45009	2025-06-06	2024-05-22	3.2	2.90	3.15	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.002	0.60	0.0	0.05	15.26	0.00	2.415	2.51	1.00	6.7	93.3	0.0	-2.51	1.24	0.38	0.78	2.49	7184	462	6	0	0	0	3656	logfile

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