Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZiY	60133	2025-06-07	2024-05-14	2.64	2.72	2.96	1.8	0.005	0.80	0.0	0.05	17.41	0.01	1.996	9.41	1.64	6.8	92.9	0.4	-0.28	0.63	0.52	0.67	1.7	0.004	0.97	0.0	0.06	12.83	0.00	2.045	14.43	1.20	8.6	91.0	0.5	-2.03	0.80	0.65	0.55	0.18	8797	1070	16	0	40	0	0	logfile
✔	8ZJD	60141	2025-06-07	2024-05-14	3.06	3.48	3.18	3.4	0.005	0.70	0.0	0.05	14.50	0.00	2.200	6.08	0.54	3.3	96.7	0.0	0.74	0.63	0.83	2.57	3.4	0.003	0.61	0.0	0.04	15.64	0.00	2.506	5.62	2.59	3.7	96.3	0.0	0.98	0.84	0.60	0.80	2.31	8820	1144	6	0	0	0	0	logfile
✔	8ZiU	60130	2025-06-07	2024-05-14	3.54	3.27	3.04	3.2	0.004	0.62	0.0	0.04	14.02	0.00	2.130	8.41	0.00	5.2	94.8	0.0	-2.79	0.82	0.86	3.04	3.2	0.003	0.56	0.0	0.04	15.69	0.00	2.466	4.76	1.29	5.1	94.9	0.0	0.49	0.45	0.83	0.86	2.69	8668	1085	3	0	1	0	0	logfile
✔	9BSN	44870	2025-06-05	2024-05-13	2.7	3.61	2.63	3.3	0.004	0.62	0.0	0.03	16.28	0.00	2.363	2.13	0.92	4.2	95.8	0.0	4.46	0.78	0.88	3.35	3.3	0.003	0.52	0.0	0.03	15.49	0.00	2.556	2.36	0.69	5.3	94.7	0.0	4.84	0.60	0.66	0.85	2.80	4342	514	4	0	26	0	0	logfile
✔	8Zi4	60121	2025-06-07	2024-05-13	2.95	2.27	3.40	1.6	0.004	0.86	1.0	0.06	18.35	0.01	1.991	9.44	1.85	6.4	93.0	0.6	-0.15	0.59	0.53	1.16	1.6	0.004	0.83	0.0	0.05	12.34	0.00	2.394	13.46	2.73	8.8	90.8	0.4	-1.63	0.66	0.61	0.57	1.60	8818	1070	17	0	41	0	0	logfile
✔	8Zi9	60122	2025-06-07	2024-05-13	3.08	3.35	3.08	3.3	0.008	0.71	0.0	0.05	14.97	0.00	2.157	14.26	0.00	5.5	94.5	0.0	-2.50	0.79	0.73	2.04	3.2	0.003	0.62	0.0	0.04	16.65	0.00	2.453	6.26	1.77	4.2	95.8	0.0	0.89	1.55	0.85	0.87	1.91	8899	1113	3	0	1	0	0	logfile
✔	9BSU	44872	2025-06-09	2024-05-13	3.36	3.84	3.35	3.7	0.004	0.85	0.0	0.06	17.46	0.01	2.093	8.78	0.19	6.0	93.7	0.2	-1.72	0.85	0.83	2.90	3.7	0.003	0.65	0.0	0.04	14.80	0.00	2.422	5.51	1.12	5.7	94.1	0.2	-0.63	1.20	0.82	0.85	2.65	10225	1287	8	0	16	0	0	logfile
✔	9BSV	44873	2025-06-08	2024-05-13	3.1	3.64	3.06	3.5	0.006	0.79	1.0	0.06	19.52	0.01	1.819	7.83	0.69	4.2	95.1	0.7	-0.72	0.81	0.89	4.06	3.5	0.003	0.62	0.0	0.04	15.97	0.00	2.402	3.76	1.19	4.5	95.2	0.3	-0.41	0.37	0.77	0.87	3.93	9879	1248	10	0	21	0	0	logfile
✔	9BRY	44845	2025-06-20	2024-05-12	3.6	3.97	3.81	4.0	0.005	0.89	0.0	0.04	16.14	0.01	2.423	5.08	2.88	4.2	95.8	0.0	-0.33	0.59	0.66	0.71	4.0	0.004	0.77	0.0	0.04	17.13	0.00	2.498	12.14	5.23	4.4	95.5	0.0	0.50	3.37	0.58	0.67	0.62	23530	3066	20	0	12	0	0	logfile
✔	8Zi2	60119	2025-06-21	2024-05-12	2.99	3.61	3.13	3.5	0.006	0.86	0.0	0.05	13.78	0.00	1.843	10.38	0.00	2.9	97.1	0.0	-0.24	0.80	0.82	2.40	3.5	0.004	0.69	0.0	0.05	15.81	0.00	1.872	6.89	1.79	3.2	96.8	0.0	0.22	0.56	0.80	0.82	2.22	25009	3276	12	0	8	0	0	logfile
✔	8Zi1	60118	2025-06-21	2024-05-12	2.92	3.57	3.02	3.4	0.006	0.86	0.0	0.06	13.34	0.00	1.792	10.26	0.00	2.9	97.1	0.0	0.10	0.85	0.86	2.75	3.4	0.003	0.61	0.0	0.04	15.38	0.00	1.996	5.98	1.41	3.0	97.0	0.0	0.61	0.48	0.85	0.86	2.53	25008	3276	12	0	7	0	0	logfile
✔	9BRZ	44846	2025-06-21	2024-05-12	3.8	4.20	3.95	4.1	0.006	0.94	0.0	0.04	16.83	0.01	2.117	5.44	3.59	4.7	95.3	0.0	-0.20	0.61	0.74	1.07	4.1	0.004	0.79	0.0	0.04	17.33	0.00	2.277	12.59	5.55	4.0	96.0	0.0	1.05	0.59	0.63	0.76	0.99	25204	3277	22	0	12	0	0	logfile
✔	8Zi3	60120	2025-06-21	2024-05-12	2.89	3.47	2.95	3.4	0.003	0.61	0.0	0.04	15.15	0.00	1.833	7.86	0.00	2.9	97.1	0.0	0.35	0.80	0.86	2.64	3.4	0.002	0.56	0.0	0.04	15.95	0.00	2.021	5.21	1.74	3.2	96.8	0.0	0.73	0.38	0.79	0.86	2.32	24671	3226	13	0	11	0	0	logfile
✔	8ZHo	60110	2025-06-12	2024-05-11	3.54	3.81	3.50	3.8	0.003	0.54	0.0	0.04	15.24	0.00	2.273	4.14	0.62	3.8	96.2	0.0	-0.09	0.68	0.66	1.28	3.7	0.003	0.61	0.0	0.04	15.73	0.00	2.429	8.28	3.59	4.7	95.3	0.0	-0.06	1.13	0.66	0.62	1.72	11423	1498	6	0	1	0	0	logfile
✔	8ZHP	60111	2025-06-23	2024-05-11	3.66	3.83	3.64	3.9	0.003	0.54	0.0	0.04	16.34	0.00	2.244	5.94	0.47	3.6	96.4	0.0	-0.49	0.66	0.63	0.63	3.8	0.003	0.58	0.0	0.04	16.68	0.00	2.413	9.98	2.69	4.7	95.3	0.0	-0.73	0.54	0.65	0.61	0.73	22856	2998	12	0	2	0	0	logfile
✔	8ZHQ	60112	2025-06-07	2024-05-11	2.37	3.14	2.49	2.9	0.004	0.68	0.0	0.05	18.66	0.01	2.181	10.10	3.44	8.3	91.7	0.0	-1.02	0.79	0.86	3.96	2.9	0.004	0.72	0.0	0.05	16.51	0.00	2.391	8.96	2.53	8.8	91.2	0.0	-0.92	0.32	0.79	0.86	3.95	8904	1164	8	0	6	0	0	logfile
✔	9FAB	50271	2025-06-07	2024-05-10	3.9	3.54	3.78	3.6	0.010	1.60	0.0	0.07	11.24	0.01	2.531	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.6	0.003	0.65	0.0	0.05	14.83	0.00	2.507	5.43	2.47	8.2	91.8	0.0	-4.95	1.00	0.46	0.69	2.18	8595	585	10	0	5	0	4190	logfile
✔	8ZH8	60096	2025-06-08	2024-05-10	3.19	3.97	3.21	3.6	0.003	0.67	0.0	0.04	12.78	0.00	2.207	11.98	0.10	2.9	97.1	0.0	0.57	0.68	0.68	1.06	3.7	0.003	0.74	0.0	0.04	16.22	0.00	2.483	11.78	2.30	3.6	96.4	0.0	0.79	0.96	0.70	0.76	0.55	10048	1316	8	0	1	0	0	logfile
✔	8ZGZ	60093	2025-06-04	2024-05-10	3.88	3.51	3.46	3.6	0.003	0.55	0.0	0.03	16.60	0.00	2.277	15.30	0.81	3.4	96.6	0.0	-0.70	0.50	0.67	1.01	3.6	0.004	0.76	0.0	0.04	17.66	0.00	2.569	13.41	3.78	5.4	94.4	0.2	-0.48	0.90	0.57	0.72	2.29	3622	471	1	0	0	0	0	logfile
✔	8ZHG	60102	2025-06-05	2024-05-10	3.51	3.69	3.43	3.7	0.003	0.66	0.0	0.04	17.55	0.01	2.273	4.79	1.11	4.3	95.7	0.0	-1.47	0.61	0.72	1.21	3.6	0.004	0.67	0.0	0.04	17.51	0.01	2.564	8.35	4.43	6.0	94.0	0.0	-1.32	1.97	0.65	0.79	1.76	3326	425	4	0	2	0	0	logfile

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