Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BTQ	44895	2025-06-28	2024-05-15	2.4	2.69	2.42	1.8	0.006	0.67	0.0	0.05	14.87	0.00	2.354	2.94	5.80	1.6	98.4	0.0	0.35	0.69	0.91	4.07	2.0	0.003	0.55	0.0	0.05	14.28	0.00	2.575	2.41	1.90	1.1	98.9	0.0	0.83	2.16	0.69	0.92	3.97	34440	4960	40	0	0	0	0	logfile
✔	8ZJJ	60147	2025-06-28	2024-05-15	4.23	2.77	4.00	3.0	0.005	0.76	0.0	0.05	14.09	0.00	2.005	29.45	0.00	6.8	93.2	0.0	-1.29	0.83	0.80	—	2.7	0.004	0.72	0.0	0.04	14.59	0.00	2.354	19.18	0.00	6.7	93.3	0.0	-0.78	0.49	0.83	0.80	—	32858	4034	6	0	0	0	0	logfile
✔	9BTW	44898	2025-06-08	2024-05-15	3.0	3.31	3.10	3.3	0.002	0.51	0.0	0.04	15.76	0.00	2.160	4.60	0.10	2.2	97.8	0.0	1.74	0.61	0.76	1.87	3.3	0.002	0.55	0.0	0.04	16.52	0.00	2.392	5.29	2.34	2.1	97.9	0.0	1.91	0.45	0.58	0.76	1.83	9713	1274	8	0	2	0	0	logfile
✔	9BTG	44889	2025-06-16	2024-05-15	3.12	3.77	3.21	3.5	0.005	0.79	0.0	0.05	12.60	0.01	2.433	0.42	0.28	2.0	98.0	0.0	-1.30	0.78	0.86	3.98	3.5	0.002	0.52	0.0	0.04	13.63	0.00	2.437	2.08	0.46	1.5	98.5	0.0	0.53	0.59	0.71	0.83	3.38	19111	1203	8	0	12	0	9273	logfile
✔	9BTL	44893	2025-06-15	2024-05-15	2.96	3.62	3.12	3.4	0.005	1.07	2.0	0.06	13.31	0.01	2.232	4.23	0.06	4.8	95.2	0.0	-1.60	0.82	0.86	3.11	3.4	0.003	0.64	0.0	0.04	13.55	0.00	2.470	4.81	1.47	3.1	96.9	0.0	0.28	1.26	0.82	0.88	3.22	16688	1931	49	0	109	0	0	logfile
✔	9BTo	44894	2025-06-10	2024-05-15	3.1	3.53	3.15	3.4	0.024	1.78	0.0	0.14	15.34	0.01	2.436	0.48	0.00	1.9	98.1	0.0	0.65	0.86	0.88	4.26	3.3	0.004	0.63	0.0	0.04	12.50	0.00	2.542	4.19	1.33	2.0	98.0	0.0	0.67	1.02	0.83	0.89	3.47	11520	1437	24	0	45	0	0	logfile
✔	9BT2	44880	2025-06-05	2024-05-14	1.93	2.60	1.93	2.4	0.015	1.69	0.0	0.10	14.06	0.01	2.562	0.00	0.40	7.1	92.9	0.0	-0.61	0.58	0.92	6.85	2.4	0.003	0.62	0.0	0.04	12.70	0.00	2.492	2.18	0.81	4.9	95.1	0.0	-0.25	1.14	0.57	0.91	6.16	4457	268	4	0	12	0	2106	logfile
✔	9BT0	44878	2025-06-25	2024-05-14	2.23	2.91	2.30	2.7	0.006	0.86	1.0	0.06	14.01	0.01	2.214	3.15	0.53	2.7	97.3	0.0	0.58	0.87	0.93	4.97	2.7	0.004	0.59	0.0	0.04	13.09	0.00	2.463	3.46	1.09	2.6	97.4	0.0	0.48	2.05	0.86	0.93	4.82	29373	3582	27	0	93	0	0	logfile
✔	9BSW	44874	2025-06-25	2024-05-14	2.06	2.80	2.12	2.5	0.013	1.70	4.0	0.10	13.10	0.01	2.503	0.30	0.40	2.9	97.1	0.0	0.41	0.86	0.93	5.57	2.5	0.003	0.56	0.0	0.04	12.83	0.00	2.465	3.24	1.06	2.6	97.4	0.0	0.53	0.97	0.86	0.93	5.07	29387	3582	29	0	94	0	0	logfile
✔	9BT9	44884	2025-06-04	2024-05-14	2.11	2.62	2.10	2.5	0.015	1.72	0.0	0.10	14.40	0.02	2.582	0.00	0.40	8.6	91.4	0.0	-1.00	0.66	0.93	7.48	2.5	0.004	0.66	0.0	0.04	12.87	0.00	2.531	4.98	1.21	4.5	95.5	0.0	-0.73	0.99	0.67	0.93	6.91	2365	268	5	0	13	0	0	logfile
✔	8ZiZ	60134	2025-06-04	2024-05-14	2.89	2.50	2.98	2.0	0.005	0.87	0.0	0.06	22.44	0.00	1.264	7.24	2.29	7.9	91.9	0.2	-0.39	0.70	0.65	1.68	2.0	0.004	1.38	1.0	0.05	13.92	0.01	2.028	11.67	3.44	12.4	87.4	0.2	-1.73	1.18	0.72	0.68	1.41	4392	511	12	0	34	0	0	logfile
✔	8ZJD	60141	2025-06-07	2024-05-14	3.06	3.48	3.18	3.4	0.005	0.70	0.0	0.05	14.50	0.00	2.200	6.08	0.54	3.3	96.7	0.0	0.74	0.63	0.83	2.57	3.4	0.003	0.61	0.0	0.04	15.64	0.00	2.506	5.62	2.59	3.7	96.3	0.0	0.98	0.84	0.60	0.80	2.31	8820	1144	6	0	0	0	0	logfile
✔	8ZiU	60130	2025-06-07	2024-05-14	3.54	3.27	3.04	3.2	0.004	0.62	0.0	0.04	14.02	0.00	2.130	8.41	0.00	5.2	94.8	0.0	-2.79	0.82	0.86	3.04	3.2	0.003	0.56	0.0	0.04	15.69	0.00	2.466	4.76	1.29	5.1	94.9	0.0	0.49	0.45	0.83	0.86	2.69	8668	1085	3	0	1	0	0	logfile
✔	8ZiP	60125	2025-06-07	2024-05-14	4.9	4.46	4.59	4.2	0.006	0.69	0.0	0.05	14.31	0.00	1.384	15.27	0.00	6.7	93.3	0.0	-3.13	0.84	0.72	—	4.2	0.003	0.71	0.0	0.04	14.38	0.00	2.390	11.90	0.00	4.9	95.1	0.0	0.32	1.14	0.86	0.76	—	8662	1084	3	0	1	0	0	logfile
✔	8ZiX	60132	2025-06-15	2024-05-14	3.54	2.85	3.50	3.5	0.005	0.71	0.0	0.05	13.61	0.00	2.114	10.39	0.00	6.4	93.6	0.0	-3.40	0.68	0.82	2.91	3.5	0.004	0.65	0.0	0.04	15.57	0.00	2.446	8.26	2.81	5.3	94.7	0.0	-0.31	0.44	0.68	0.82	2.67	17556	2226	12	0	6	0	0	logfile
✔	8ZJG	60144	2025-06-08	2024-05-14	3.18	3.56	3.29	3.5	0.005	0.82	0.0	0.05	15.71	0.01	2.180	14.09	1.00	6.0	93.9	0.1	0.03	0.64	0.83	1.97	3.5	0.003	0.67	0.0	0.04	16.21	0.00	2.472	8.11	3.53	5.8	94.1	0.1	0.29	0.48	0.65	0.85	2.18	10123	1274	8	0	4	1	0	logfile
✔	8ZJ1	60135	2025-06-12	2024-05-14	4.25	4.27	4.18	4.2	0.012	0.82	0.0	0.06	13.66	0.01	2.196	10.16	0.00	5.9	94.1	0.0	-2.24	0.79	0.74	—	4.2	0.003	0.70	0.0	0.04	13.50	0.00	2.447	8.95	0.00	4.0	96.0	0.0	1.05	2.29	0.82	0.87	—	14625	1855	10	0	5	0	0	logfile
✔	8ZiY	60133	2025-06-07	2024-05-14	2.64	2.72	2.96	1.8	0.005	0.80	0.0	0.05	17.41	0.01	1.996	9.41	1.64	6.8	92.9	0.4	-0.28	0.63	0.52	0.67	1.7	0.004	0.97	0.0	0.06	12.83	0.00	2.045	14.43	1.20	8.6	91.0	0.5	-2.03	0.80	0.65	0.55	0.18	8797	1070	16	0	40	0	0	logfile
✔	9BT8	44881	2025-06-05	2024-05-14	3.34	3.52	3.31	3.5	0.005	0.64	0.0	0.04	16.43	0.00	2.269	6.88	0.32	3.0	97.0	0.0	-0.41	0.74	0.85	2.56	3.5	0.004	0.60	0.0	0.04	16.94	0.00	2.540	5.91	4.67	3.3	96.7	0.0	-0.37	0.30	0.72	0.84	2.26	5712	728	6	0	0	0	0	logfile
✔	8ZiW	60131	2025-06-04	2024-05-14	2.92	2.49	3.00	2.0	0.005	0.88	0.0	0.06	22.01	0.00	2.247	8.18	1.81	8.7	91.3	0.0	-0.82	0.65	0.58	1.89	1.9	0.003	0.91	0.0	0.05	12.42	0.01	2.467	11.52	2.26	11.3	88.7	0.0	-2.04	1.02	0.67	0.61	1.74	4450	519	12	0	34	0	0	logfile

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