Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZKW	60210	2025-06-07	2024-05-17	2.77	3.79	3.00	3.5	0.005	0.69	0.0	0.05	12.73	0.00	2.101	8.14	0.00	2.5	97.5	0.0	0.83	0.67	0.88	2.97	3.5	0.003	0.60	0.0	0.04	14.50	0.00	2.495	8.14	0.55	2.2	97.8	0.0	1.72	0.36	0.66	0.86	2.22	8504	1080	4	0	4	0	0	logfile
✔	8ZL1	60215	2025-06-07	2024-05-17	2.86	3.89	2.90	3.5	0.004	0.65	0.0	0.04	12.59	0.00	2.214	8.00	0.22	2.5	97.5	0.0	1.27	0.71	0.87	2.81	3.5	0.002	0.57	0.0	0.04	14.10	0.00	2.498	7.42	0.88	2.3	97.7	0.0	1.54	0.32	0.71	0.87	2.63	8466	1078	4	0	2	0	0	logfile
✔	8ZL9	38897	2025-06-05	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.005	0.83	0.0	0.05	14.34	0.01	2.530	21.86	0.00	11.5	88.4	0.1	-2.19	1.28	0.59	0.56	—	6644	838	5	0	0	0	0	logfile
✔	8ZKZ	60213	2025-06-07	2024-05-17	2.7	3.71	2.76	3.4	0.008	0.82	0.0	0.05	11.98	0.01	2.107	3.41	0.22	2.3	97.7	0.0	1.23	0.73	0.89	3.23	3.4	0.003	0.55	0.0	0.04	13.66	0.00	2.525	4.05	0.55	2.1	97.9	0.0	2.17	0.91	0.72	0.88	2.20	8490	1080	4	0	3	0	0	logfile
✔	8ZKS	60207	2025-06-14	2024-05-17	3.21	3.57	3.36	3.5	0.003	0.61	0.0	0.04	14.04	0.00	1.942	6.94	0.14	9.1	90.6	0.3	-0.33	0.60	0.79	2.20	3.5	0.005	0.63	0.0	0.04	15.38	0.00	2.534	5.13	2.38	9.3	90.5	0.1	-0.24	0.35	0.62	0.83	2.12	16170	2172	6	0	7	0	0	logfile
✔	8ZL4	60218	2025-06-07	2024-05-17	3.65	4.23	3.93	4.1	0.006	0.82	0.0	0.05	13.18	0.01	2.252	8.44	0.00	1.8	98.2	0.0	0.78	0.64	0.87	2.37	4.1	0.005	1.13	1.0	0.04	15.64	0.01	2.239	10.95	2.94	1.9	98.1	0.0	1.28	0.95	0.63	0.86	1.40	8596	1082	4	0	6	0	0	logfile
✔	8ZL6	60220	2025-06-07	2024-05-17	2.8	3.89	2.87	3.6	0.006	0.74	0.0	0.05	11.80	0.00	2.204	5.47	0.33	1.7	98.3	0.0	2.02	0.68	0.86	2.89	3.6	0.002	0.53	0.0	0.04	13.63	0.00	2.523	5.24	0.22	1.7	98.3	0.0	2.33	0.33	0.68	0.87	2.01	8508	1078	4	0	4	0	0	logfile
✔	8ZKT	60208	2025-06-15	2024-05-17	3.34	3.46	3.25	3.4	0.008	0.71	0.0	0.04	14.67	0.00	1.820	9.01	0.11	9.1	90.4	0.5	-1.10	0.63	0.84	2.90	3.4	0.004	0.60	0.0	0.04	16.30	0.00	2.361	4.79	2.18	8.2	91.7	0.1	-0.18	1.15	0.62	0.85	2.64	17369	2166	7	0	9	0	0	logfile
✔	8ZKU	60209	2025-06-14	2024-05-17	3.34	3.60	3.39	3.6	0.008	0.66	0.0	0.04	14.28	0.00	2.228	5.90	0.00	7.5	92.4	0.1	-0.67	0.66	0.82	2.48	3.6	0.002	0.57	0.0	0.04	15.02	0.00	2.406	4.67	1.91	6.2	93.8	0.0	0.44	0.35	0.65	0.83	1.60	16174	2171	6	0	6	0	0	logfile
✔	8ZKE	60190	2025-06-05	2024-05-16	3.72	3.87	3.75	3.9	0.012	1.57	0.0	0.08	17.44	0.01	2.372	25.47	0.99	5.0	95.0	0.0	-3.17	0.47	0.59	1.69	3.9	0.003	0.72	0.0	0.04	16.08	0.00	2.422	10.84	2.65	8.9	90.8	0.3	-0.96	1.71	0.47	0.65	1.89	6057	386	2	0	1	0	3070	logfile
✔	9BU7	44902	2025-06-11	2024-05-16	3.64	4.08	3.63	4.0	0.005	0.63	0.0	0.05	14.96	0.00	1.785	7.53	2.13	5.5	94.5	0.0	-1.87	0.74	0.76	2.45	4.0	0.003	0.56	0.0	0.04	17.10	0.00	1.934	5.17	3.07	2.6	97.4	0.0	0.51	0.58	0.76	0.78	1.79	12831	1933	12	28	5	0	0	logfile
✔	9BU6	44901	2025-06-15	2024-05-16	3.65	4.03	3.70	4.0	0.004	0.66	1.0	0.04	15.97	0.01	1.900	5.79	2.88	4.0	95.8	0.3	-1.50	0.74	0.82	2.49	4.0	0.006	0.98	2.0	0.05	17.35	0.01	2.234	4.24	3.80	5.8	94.0	0.2	-1.44	1.22	0.75	0.84	1.93	17439	2193	24	0	24	0	0	logfile
✔	8ZKH	60196	2025-06-15	2024-05-16	2.3	2.44	2.67	2.9	0.007	0.82	0.0	0.08	16.07	0.01	1.186	8.14	0.88	7.1	92.6	0.2	-0.21	0.59	0.78	2.21	2.9	0.003	0.60	0.0	0.04	16.46	0.00	2.483	4.10	2.58	6.5	93.5	0.0	0.61	1.60	0.61	0.82	2.18	17124	2181	8	0	12	0	0	logfile
✔	9BUE	44907	2025-06-07	2024-05-16	3.6	3.84	3.66	3.8	0.003	0.57	0.0	0.04	15.56	0.00	2.201	7.24	0.42	1.8	98.2	0.0	0.52	0.66	0.79	1.05	3.8	0.004	0.94	1.0	0.04	16.54	0.00	1.588	8.99	4.94	2.2	97.8	0.0	0.83	0.47	0.67	0.81	1.17	9002	1148	7	0	1	0	0	logfile
✔	8ZJK	60148	2025-06-28	2024-05-15	4.23	2.86	4.02	3.2	0.007	0.89	0.0	0.05	14.03	0.00	2.063	36.05	0.05	7.7	92.3	0.0	-1.44	0.84	0.80	—	3.2	0.003	0.70	0.0	0.04	14.22	0.00	2.361	16.17	0.03	4.8	95.2	0.0	-0.35	0.51	0.84	0.81	—	32858	4034	6	0	0	0	0	logfile
✔	9FCJ	50317	2025-06-04	2024-05-15	2.7	2.89	2.65	2.9	0.003	0.57	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.56	0.0	0.04	17.09	0.00	2.595	5.24	2.51	2.1	97.9	0.0	1.45	0.42	0.52	0.84	2.79	3174	389	5	0	2	29	0	logfile
✔	9BTG	44889	2025-06-16	2024-05-15	3.12	3.77	3.21	3.5	0.005	0.79	0.0	0.05	12.60	0.01	2.433	0.42	0.28	2.0	98.0	0.0	-1.30	0.78	0.86	3.98	3.5	0.002	0.52	0.0	0.04	13.63	0.00	2.437	2.08	0.46	1.5	98.5	0.0	0.53	0.59	0.71	0.83	3.38	19111	1203	8	0	12	0	9273	logfile
✔	8ZK2	60165	2025-06-26	2024-05-15	2.65	2.87	2.70	2.9	0.022	2.01	0.0	0.05	19.51	0.02	2.047	13.02	0.05	2.0	98.0	0.0	1.75	0.70	0.85	4.92	2.9	0.006	0.73	0.0	0.04	18.59	0.00	2.026	10.14	1.64	2.1	97.9	0.0	2.22	1.50	0.66	0.85	4.22	26948	2772	72	0	111	0	0	logfile
✔	8ZJL	60149	2025-06-28	2024-05-15	4.31	2.94	4.04	2.7	0.005	0.81	0.0	0.05	13.88	0.00	2.086	37.03	0.00	9.0	91.0	0.0	-1.91	0.85	0.79	—	2.6	0.003	0.70	0.0	0.04	14.35	0.00	2.326	15.09	0.00	5.1	94.9	0.0	-0.69	2.33	0.85	0.80	—	32858	4034	6	0	0	0	0	logfile
✔	8ZJi	60146	2025-06-28	2024-05-15	4.23	2.82	4.00	3.3	0.005	0.80	0.0	0.05	14.18	0.00	2.061	32.15	0.00	6.4	93.6	0.0	-1.62	0.83	0.77	—	2.7	0.003	0.71	0.0	0.04	14.26	0.01	2.288	17.06	0.00	4.5	95.5	0.0	-0.49	1.38	0.83	0.79	—	32858	4034	6	0	0	0	0	logfile

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