Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BP6	44762	2025-06-12	2024-05-07	3.1	3.37	3.01	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.004	0.63	0.0	0.04	17.27	0.00	1.904	5.91	2.68	2.4	97.6	0.0	0.42	0.72	0.77	0.85	3.11	13631	1732	8	0	8	0	0	logfile
✔	9BPK	44780	2025-06-27	2024-05-07	2.1	2.93	2.14	2.5	0.011	1.78	12.0	0.10	14.96	0.02	2.480	0.64	3.45	2.0	97.7	0.3	0.39	0.83	0.79	4.49	2.5	0.003	0.56	0.0	0.03	17.46	0.00	2.504	8.75	1.01	1.3	98.7	0.0	3.66	1.25	0.88	0.87	4.19	33192	4128	24	0	0	0	0	logfile
✔	8ZF9	60053	2025-06-08	2024-05-07	2.56	2.44	2.48	2.2	0.010	0.89	8.0	0.06	12.39	0.00	1.710	10.06	0.45	5.4	94.6	0.0	-0.94	0.83	0.83	4.29	2.2	0.003	0.63	0.0	0.04	14.73	0.00	2.456	5.31	2.57	3.0	97.0	0.0	0.22	1.38	0.85	0.85	3.63	9330	1273	6	0	0	0	0	logfile
✔	9BPM	44781	2025-06-10	2024-05-07	3.42	3.74	3.49	3.7	0.005	0.91	4.0	0.05	16.99	0.02	2.227	10.07	0.00	3.7	96.2	0.1	-1.61	0.57	0.80	1.56	3.7	0.003	0.67	0.0	0.05	16.75	0.01	2.092	4.11	1.43	5.1	94.9	0.0	-0.52	1.10	0.62	0.86	1.66	11740	1484	8	0	8	0	0	logfile
✔	9BPJ	44779	2025-06-27	2024-05-07	2.85	3.59	3.01	3.3	0.011	1.77	15.0	0.10	15.27	0.02	2.472	0.30	2.84	3.1	96.2	0.7	-0.36	0.80	0.78	3.66	3.3	0.003	0.59	0.0	0.04	17.34	0.00	2.491	8.88	1.15	2.4	97.6	0.0	3.56	1.18	0.85	0.82	2.09	33192	4128	24	0	0	0	0	logfile
✔	8ZF7	60052	2025-06-04	2024-05-07	3.15	2.41	2.43	2.9	0.007	0.90	1.0	0.06	12.64	0.01	2.300	9.64	0.54	6.0	94.0	0.0	-0.35	0.72	0.77	2.96	2.9	0.004	0.74	0.0	0.04	14.80	0.01	2.598	5.44	0.00	4.9	95.1	0.0	1.64	0.46	0.73	0.79	1.99	2076	288	1	0	0	0	0	logfile
✔	8ZF6	60051	2025-06-06	2024-05-07	2.98	2.27	2.88	2.9	0.009	0.80	3.0	0.06	12.40	0.01	2.120	8.51	0.62	4.7	95.3	0.0	-0.35	0.81	0.78	3.84	2.9	0.004	0.65	0.0	0.04	15.66	0.00	2.433	6.32	2.25	3.5	96.5	0.0	0.54	1.59	0.84	0.83	3.76	8284	1129	5	0	0	0	0	logfile
✔	8ZFC	60056	2025-06-07	2024-05-07	2.68	2.47	2.60	2.2	0.006	0.74	2.0	0.05	12.45	0.00	2.051	7.63	0.12	5.6	94.4	0.0	-0.79	0.81	0.79	4.41	2.2	0.004	0.65	0.0	0.04	15.50	0.00	2.402	5.57	2.61	3.9	96.1	0.0	0.23	0.40	0.84	0.86	3.40	8545	1149	5	0	0	0	0	logfile
✔	8ZF4	60050	2025-06-04	2024-05-07	3.05	2.37	2.34	2.2	0.006	0.95	0.0	0.05	13.23	0.01	2.290	9.68	0.54	7.4	92.6	0.0	-0.59	0.79	0.77	4.07	2.9	0.004	0.72	0.0	0.04	15.66	0.01	2.467	6.95	1.63	6.7	93.3	0.0	1.06	1.00	0.80	0.79	3.66	2073	288	1	0	0	0	0	logfile
✔	9BPD	44772	2025-06-06	2024-05-07	3.63	4.09	3.84	4.1	0.003	0.68	0.0	0.05	17.66	0.00	2.046	13.38	0.38	12.0	87.7	0.3	-2.62	0.61	0.71	2.29	4.1	0.004	0.72	0.0	0.05	17.27	0.00	1.946	9.83	2.89	11.6	88.4	0.0	-2.33	0.39	0.67	0.77	2.17	7551	918	12	0	21	0	0	logfile
✔	8ZFA	60054	2025-06-07	2024-05-07	2.96	2.20	2.83	2.0	0.004	0.74	3.0	0.06	12.50	0.01	1.845	10.39	0.50	4.8	95.2	0.0	0.22	0.75	0.72	3.82	1.9	0.003	0.69	0.0	0.04	15.66	0.01	2.547	8.28	2.86	4.1	95.9	0.0	0.57	1.18	0.78	0.78	3.15	8313	1134	5	0	0	0	0	logfile
✔	9BPH	44777	2025-06-10	2024-05-07	3.12	3.45	3.21	3.4	0.005	0.82	0.0	0.06	19.16	0.03	2.280	5.23	3.34	3.8	96.2	0.0	-1.65	0.54	0.82	2.29	3.4	0.003	0.61	0.0	0.04	16.83	0.00	2.319	3.21	1.99	3.4	96.6	0.0	0.30	1.43	0.59	0.88	2.54	11740	1484	8	0	8	0	0	logfile
✔	9BP7	44763	2025-06-12	2024-05-07	3.6	3.88	3.67	6.0	0.003	0.54	0.0	0.04	10.98	0.00	1.924	7.56	3.55	3.4	96.4	0.2	0.28	0.18	0.04	0.58	3.9	0.003	0.77	0.0	0.04	14.98	0.00	2.294	8.66	1.81	3.8	96.0	0.2	-0.20	1.12	0.51	0.59	0.53	13731	1706	10	0	5	0	0	logfile
✔	8ZEU	60046	2025-06-12	2024-05-07	3.39	3.59	3.37	3.6	0.004	0.61	0.0	0.04	12.93	0.00	1.776	8.03	0.12	2.4	97.6	0.0	0.98	0.70	0.70	2.11	3.6	0.003	0.61	0.0	0.04	16.23	0.00	2.316	7.54	3.99	2.8	97.2	0.0	0.71	0.84	0.78	0.81	2.25	14534	1906	10	0	0	0	0	logfile
✔	9BPi	44778	2025-06-27	2024-05-07	3.3	4.06	3.49	3.7	0.011	1.75	18.0	0.10	15.49	0.02	2.506	0.50	4.31	4.5	94.8	0.8	0.03	0.77	0.69	2.73	3.7	0.005	0.85	0.0	0.04	18.34	0.00	2.248	17.58	3.65	3.1	96.9	0.0	1.18	1.40	0.88	0.87	1.59	33192	4128	24	0	0	0	0	logfile
✔	8ZFD	60057	2025-06-04	2024-05-07	2.56	2.01	2.33	2.6	0.007	0.99	2.0	0.06	13.01	0.01	2.217	9.64	0.46	9.9	90.1	0.0	-1.61	0.77	0.76	3.98	2.6	0.004	0.68	0.0	0.04	15.71	0.00	2.600	6.88	4.15	5.8	94.2	0.0	0.48	0.43	0.75	0.78	3.64	2231	294	1	0	0	0	0	logfile
✔	9BoY	44754	2025-06-12	2024-05-06	3.81	4.12	3.85	4.1	0.004	0.63	0.0	0.04	13.39	0.00	2.079	11.78	1.73	4.2	95.7	0.1	-0.15	0.70	0.84	3.03	4.1	0.003	0.64	0.0	0.04	14.67	0.00	2.520	8.79	2.20	3.7	96.3	0.1	0.10	0.90	0.72	0.83	2.60	13819	1717	12	0	5	0	0	logfile
✔	8ZEK	60037	2025-06-10	2024-05-06	3.15	3.85	3.16	3.5	0.003	0.68	0.0	0.04	17.29	0.00	2.266	9.27	1.29	3.0	97.0	0.0	0.39	0.69	0.53	1.18	3.5	0.003	0.68	0.0	0.04	18.14	0.00	2.349	9.36	1.86	3.3	96.7	0.0	0.52	1.04	0.78	0.82	1.51	11560	1426	3	0	0	0	0	logfile
✔	8ZEQ	60043	2025-06-11	2024-05-06	3.36	3.64	3.50	3.7	0.002	0.45	0.0	0.04	18.48	0.00	2.255	5.95	3.44	4.0	95.9	0.1	1.12	0.60	0.59	0.73	3.7	0.005	0.77	0.0	0.05	18.57	0.01	2.486	10.72	4.71	9.0	90.9	0.1	-0.56	0.90	0.68	0.72	1.30	12294	1532	1	0	0	0	0	logfile
✔	9BoZ	44755	2025-06-12	2024-05-06	3.84	4.19	3.98	4.1	0.003	0.61	0.0	0.04	12.21	0.00	0.526	14.60	5.02	3.4	96.3	0.3	0.20	0.61	0.80	2.01	4.1	0.003	0.73	0.0	0.05	14.89	0.00	2.493	10.90	3.88	5.0	94.9	0.1	-0.11	1.26	0.66	0.82	1.45	13732	1705	10	0	5	0	0	logfile

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