Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BP0	44756	2025-06-12	2024-05-06	3.67	3.98	3.79	4.0	0.003	0.62	0.0	0.04	15.35	0.00	2.126	10.30	4.96	3.9	96.1	0.1	0.48	0.59	0.65	0.51	4.0	0.008	0.90	0.0	0.05	16.50	0.00	2.394	12.39	3.69	5.2	94.8	0.0	0.14	0.96	0.65	0.83	1.73	13743	1708	10	0	5	0	0	logfile
✔	8ZEo	60041	2025-06-07	2024-05-06	2.79	2.98	2.83	3.0	0.015	0.91	1.0	0.35	18.71	0.01	2.108	11.01	2.12	4.5	94.9	0.6	0.70	0.59	0.81	3.35	3.0	0.003	0.61	0.0	0.05	17.86	0.01	2.457	8.04	2.33	4.3	95.5	0.2	0.67	0.48	0.69	0.86	3.09	9055	1152	6	0	4	0	0	logfile
✔	9BoZ	44755	2025-06-12	2024-05-06	3.84	4.19	3.98	4.1	0.003	0.61	0.0	0.04	12.21	0.00	0.526	14.60	5.02	3.4	96.3	0.3	0.20	0.61	0.80	2.01	4.1	0.003	0.73	0.0	0.05	14.89	0.00	2.493	10.90	3.88	5.0	94.9	0.1	-0.11	1.26	0.66	0.82	1.45	13732	1705	10	0	5	0	0	logfile
✔	9BoY	44754	2025-06-12	2024-05-06	3.81	4.12	3.85	4.1	0.004	0.63	0.0	0.04	13.39	0.00	2.079	11.78	1.73	4.2	95.7	0.1	-0.15	0.70	0.84	3.03	4.1	0.003	0.64	0.0	0.04	14.67	0.00	2.520	8.79	2.20	3.7	96.3	0.1	0.10	0.90	0.72	0.83	2.60	13819	1717	12	0	5	0	0	logfile
✔	8ZEE	60026	2025-06-17	2024-05-06	2.9	2.66	2.99	3.3	0.008	1.19	0.0	0.04	18.03	0.01	2.080	5.25	0.00	2.7	97.2	0.1	1.55	0.78	0.82	2.75	3.3	0.003	0.57	0.0	0.04	16.78	0.00	2.356	5.33	1.59	3.2	96.8	0.0	1.88	0.39	0.79	0.85	2.39	20218	2101	26	0	70	0	0	logfile
✔	8ZE0	60019	2025-06-11	2024-05-04	2.54	3.65	2.56	3.2	0.002	0.55	0.0	0.04	17.02	0.00	2.254	8.17	0.28	2.3	97.4	0.3	2.35	0.68	0.71	2.45	3.3	0.004	0.96	1.0	0.04	17.08	0.00	2.143	12.14	2.39	2.2	97.6	0.3	2.64	1.56	0.68	0.85	3.07	12880	1568	4	0	0	0	0	logfile
✔	8ZE3	60022	2025-06-10	2024-05-04	3.17	3.37	3.22	3.5	0.004	0.68	0.0	0.04	19.03	0.00	2.064	9.22	2.88	3.8	96.2	0.0	1.13	0.51	0.77	1.87	3.4	0.005	0.66	0.0	0.04	18.11	0.00	1.767	9.10	3.64	3.7	96.3	0.0	2.47	0.36	0.59	0.83	1.64	12072	1496	8	0	4	0	0	logfile
✔	8ZE2	60021	2025-06-11	2024-05-04	2.57	3.08	2.66	3.0	0.009	0.84	0.0	0.05	17.75	0.01	2.033	21.00	0.56	5.6	94.2	0.3	-1.29	0.61	0.72	1.22	3.0	0.004	0.84	0.0	0.05	17.36	0.01	2.354	14.94	2.46	5.4	94.6	0.0	0.51	0.53	0.54	0.72	1.22	12972	1568	8	0	8	0	0	logfile
✔	9BoG	44735	2025-06-08	2024-05-03	3.99	2.85	3.92	3.9	0.002	0.54	0.0	0.04	14.61	0.00	2.218	6.86	0.29	3.2	96.8	0.0	0.13	0.76	0.72	2.01	2.3	0.004	0.75	0.0	0.05	15.51	0.00	2.499	10.73	7.14	6.2	93.8	0.0	-0.43	1.34	0.77	0.77	2.52	9370	1438	4	0	0	0	0	logfile
✔	8ZDZ	60018	2025-06-10	2024-05-03	2.64	3.50	2.71	3.3	0.004	0.63	0.0	0.04	17.96	0.00	2.260	6.41	2.35	2.7	97.3	0.0	2.47	0.61	0.84	1.84	3.3	0.003	0.65	0.0	0.04	17.77	0.00	2.507	5.22	2.42	2.8	97.2	0.0	3.92	1.41	0.58	0.81	2.05	12024	1496	4	0	0	0	0	logfile
✔	8ZDV	60014	2025-06-10	2024-05-03	2.8	3.02	2.82	3.1	0.006	0.95	0.0	0.06	14.60	0.01	2.022	8.78	0.00	1.8	98.2	0.0	-0.56	0.73	0.78	4.03	3.1	0.004	0.71	0.0	0.05	15.49	0.00	2.505	8.39	2.32	3.7	96.3	0.0	-0.76	0.45	0.72	0.80	4.10	12210	1473	15	0	33	0	0	logfile
✔	8ZDY	60017	2025-06-18	2024-05-03	3.6	2.44	3.62	2.0	0.010	1.40	1.0	0.08	18.13	0.01	2.258	10.27	1.97	7.0	92.9	0.2	-3.03	0.80	0.78	2.00	1.9	0.004	0.73	0.0	0.04	18.84	0.00	2.466	12.17	4.42	5.7	94.3	0.0	-1.19	0.55	0.80	0.78	2.05	21564	2630	10	58	0	0	0	logfile
✔	9Boi	44742	2025-06-04	2024-05-03	3.22	3.46	3.16	3.4	0.006	0.91	0.0	0.05	16.43	0.01	2.319	3.63	0.00	2.6	97.4	0.0	-1.38	0.55	0.79	3.30	3.5	0.003	0.61	0.0	0.04	16.69	0.00	2.505	3.48	1.17	2.9	97.1	0.0	3.13	0.82	0.58	0.81	2.13	3256	423	2	0	1	0	0	logfile
✔	9BoJ	44744	2025-06-04	2024-05-03	3.5	3.66	3.22	3.6	0.003	0.53	0.0	0.03	13.58	0.00	2.333	4.79	8.70	7.3	92.7	0.0	1.83	0.55	0.76	2.21	3.6	0.003	0.61	0.0	0.04	16.08	0.00	2.503	7.18	5.53	7.0	93.0	0.0	1.75	0.73	0.54	0.75	1.86	2560	321	1	0	0	0	0	logfile
✔	8ZDR	60006	2025-06-06	2024-05-03	2.65	2.88	2.68	2.9	0.005	0.67	0.0	0.04	23.33	0.01	1.902	7.72	0.55	4.0	96.0	0.0	-0.52	0.66	0.75	3.99	2.9	0.004	0.60	0.0	0.04	23.00	0.00	2.118	12.28	2.19	3.6	96.4	0.0	0.02	0.90	0.65	0.75	3.16	7440	446	5	187	1	0	0	logfile
✔	9BoF	44734	2025-06-06	2024-05-03	2.61	3.47	2.64	3.2	0.010	0.87	0.0	0.05	15.88	0.01	1.813	15.83	6.87	5.3	94.5	0.2	-1.43	0.81	0.79	3.63	3.2	0.005	0.75	0.0	0.05	15.65	0.01	2.509	11.16	1.44	5.0	95.0	0.0	0.45	1.35	0.80	0.82	3.42	8076	1060	6	0	0	0	0	logfile
✔	9BM3	44686	2025-06-19	2024-05-02	3.49	3.92	3.71	3.8	0.004	0.68	0.0	0.04	16.65	0.01	2.163	12.54	0.54	2.4	97.6	0.0	1.04	0.77	0.81	1.59	3.9	0.003	0.60	0.0	0.04	16.94	0.00	2.396	8.97	1.95	2.1	97.9	0.0	1.80	0.38	0.74	0.82	1.38	21867	2711	2	0	4	0	0	logfile
✔	9BMY	44715	2025-06-20	2024-05-02	2.86	3.19	2.97	3.2	0.004	0.62	0.0	0.04	14.22	0.01	1.745	6.64	0.00	1.5	98.4	0.1	1.58	0.73	0.83	3.78	3.2	0.004	0.58	0.0	0.04	16.92	0.00	1.921	5.36	2.15	1.5	98.5	0.0	2.19	0.70	0.68	0.85	3.32	23707	2937	2	0	6	0	0	logfile
✔	9BMN	44704	2025-06-19	2024-05-02	3.8	4.15	3.91	4.0	0.004	0.65	0.0	0.04	16.54	0.01	2.163	12.45	0.25	2.1	97.9	0.0	1.17	0.79	0.76	1.13	4.0	0.004	0.69	0.0	0.04	17.28	0.00	2.476	12.06	2.45	2.4	97.6	0.0	1.63	0.90	0.80	0.80	1.26	21867	2711	2	0	4	0	0	logfile
✔	9BMo	44705	2025-06-19	2024-05-02	3.6	4.01	3.79	3.9	0.003	0.67	0.0	0.04	17.44	0.01	2.126	14.76	0.46	2.1	97.9	0.0	1.30	0.78	0.80	1.12	3.9	0.003	0.62	0.0	0.04	17.77	0.00	2.468	10.41	2.24	2.3	97.7	0.0	1.50	1.90	0.77	0.80	1.23	21867	2711	2	0	4	0	0	logfile

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