Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BMD	44696	2025-06-21	2024-05-02	2.9	3.24	2.99	3.2	0.004	0.56	0.0	0.04	14.59	0.00	1.948	9.80	0.04	1.8	98.2	0.1	1.22	0.69	0.85	3.23	3.2	0.003	0.53	0.0	0.04	16.14	0.00	1.966	7.58	0.67	2.0	98.0	0.1	2.12	0.31	0.63	0.81	2.88	24603	3038	2	0	8	0	0	logfile
✔	9BM3	44686	2025-06-19	2024-05-02	3.49	3.92	3.71	3.8	0.004	0.68	0.0	0.04	16.65	0.01	2.163	12.54	0.54	2.4	97.6	0.0	1.04	0.77	0.81	1.59	3.9	0.003	0.60	0.0	0.04	16.94	0.00	2.396	8.97	1.95	2.1	97.9	0.0	1.80	0.38	0.74	0.82	1.38	21867	2711	2	0	4	0	0	logfile
✔	9BN0	44717	2025-06-20	2024-05-02	3.6	3.98	3.82	3.8	0.005	0.72	0.0	0.05	16.97	0.00	1.515	11.56	0.46	2.3	97.6	0.1	1.54	0.70	0.64	0.58	3.9	0.003	0.71	0.0	0.04	17.61	0.00	1.896	11.86	2.01	2.6	97.3	0.0	1.70	1.70	0.78	0.80	1.03	23497	2909	2	0	5	0	0	logfile
✔	9BN4	44721	2025-06-20	2024-05-02	2.9	3.20	3.03	3.3	0.004	0.71	0.0	0.04	14.83	0.01	2.098	11.61	0.04	2.5	97.3	0.1	0.80	0.67	0.78	2.25	3.2	0.003	0.64	0.0	0.04	17.03	0.00	2.480	9.57	2.44	2.8	97.1	0.1	1.27	0.54	0.64	0.77	2.29	23078	2855	2	0	4	0	0	logfile
✔	9F6V	50241	2025-06-05	2024-05-02	3.5	3.71	3.48	3.7	0.023	1.55	0.0	0.09	12.47	0.01	2.292	1.59	0.00	2.7	97.3	0.0	0.30	0.53	0.65	2.58	3.7	0.003	0.67	0.0	0.05	15.88	0.00	2.484	7.27	2.07	3.2	96.8	0.0	0.49	1.49	0.70	0.79	1.55	6610	844	3	0	1	0	0	logfile
✔	9BMV	44712	2025-06-21	2024-05-02	3.7	4.07	3.89	3.9	0.003	0.62	0.0	0.04	14.58	0.01	1.916	13.40	0.04	2.6	97.4	0.0	1.66	0.80	0.81	1.17	3.9	0.004	0.79	1.0	0.04	16.39	0.00	1.917	13.67	1.44	2.8	97.2	0.0	1.62	0.51	0.80	0.82	1.22	24616	3043	2	0	5	0	0	logfile
✔	9BMR	44708	2025-06-20	2024-05-02	2.6	2.89	2.75	2.9	0.004	0.62	0.0	0.04	14.22	0.01	1.745	6.54	0.00	1.5	98.4	0.1	1.58	0.72	0.82	3.60	2.9	0.004	0.56	0.0	0.04	16.94	0.00	1.899	5.88	2.00	1.5	98.5	0.0	2.22	1.29	0.65	0.83	3.37	23707	2937	2	0	6	0	0	logfile
✔	9BMC	44695	2025-06-21	2024-05-02	3.5	3.84	3.61	3.8	0.004	0.58	0.0	0.04	14.79	0.00	1.903	9.42	0.04	2.5	97.5	0.0	1.50	0.78	0.80	1.62	3.8	0.003	0.56	0.0	0.04	16.37	0.00	1.916	8.06	1.55	2.5	97.5	0.0	2.21	1.21	0.74	0.78	1.16	24617	3043	2	0	6	0	0	logfile
✔	9BMW	44713	2025-06-21	2024-05-02	3.3	3.69	3.50	3.6	0.003	0.64	0.0	0.04	14.82	0.00	1.967	11.13	0.00	2.2	97.8	0.0	1.71	0.74	0.80	1.58	3.6	0.004	0.72	1.0	0.04	16.39	0.00	1.984	10.01	1.59	2.3	97.7	0.0	1.92	0.47	0.74	0.83	1.62	24617	3043	2	0	6	0	0	logfile
✔	9BM8	44691	2025-06-21	2024-05-02	3.22	3.62	3.38	3.6	0.003	0.59	0.0	0.04	14.75	0.00	1.716	9.88	0.04	2.7	97.3	0.0	1.80	0.75	0.81	2.26	3.6	0.002	0.54	0.0	0.04	16.24	0.00	2.483	7.44	1.31	2.7	97.2	0.0	2.07	0.91	0.69	0.83	2.10	24220	2991	2	0	4	0	0	logfile
✔	9BMA	44693	2025-06-21	2024-05-02	3.2	3.51	3.28	3.5	0.004	0.65	0.0	0.04	16.52	0.00	1.841	10.19	0.15	2.3	97.7	0.0	1.68	0.76	0.83	2.19	3.5	0.004	0.57	0.0	0.04	16.93	0.00	1.858	7.90	2.78	2.2	97.8	0.0	1.69	0.39	0.72	0.85	1.99	24476	3029	2	0	4	0	0	logfile
✔	9BMT	44710	2025-06-19	2024-05-02	3.7	4.15	3.92	4.0	0.003	0.62	0.0	0.04	14.37	0.00	2.092	12.97	0.04	2.0	98.0	0.0	1.57	0.80	0.79	0.99	4.0	0.003	0.67	0.0	0.04	16.40	0.00	2.470	11.90	1.33	2.4	97.6	0.0	1.59	1.54	0.79	0.81	0.73	21867	2711	2	0	4	0	0	logfile
✔	9BNP	44733	2025-06-14	2024-05-02	3.17	3.83	3.25	3.6	0.006	1.24	1.0	0.07	15.57	0.00	2.207	3.65	0.00	4.1	95.9	0.0	-0.57	0.78	0.82	2.90	3.6	0.003	0.63	0.0	0.04	13.49	0.00	2.451	3.59	1.59	2.6	97.4	0.0	0.19	0.41	0.80	0.85	2.92	16537	1920	49	0	107	0	0	logfile
✔	9BN6	44723	2025-06-20	2024-05-02	3.4	3.72	3.48	3.6	0.003	0.61	0.0	0.04	13.81	0.00	2.142	11.16	0.00	2.7	97.1	0.1	1.07	0.73	0.73	1.51	3.6	0.003	0.61	0.0	0.04	16.22	0.00	2.473	9.18	1.73	2.8	97.1	0.1	1.40	0.72	0.77	0.78	1.41	23078	2855	2	0	4	0	0	logfile
✔	9BMS	44709	2025-06-20	2024-05-02	3.04	3.40	3.22	3.4	0.004	0.60	0.0	0.04	15.12	0.01	1.330	7.13	0.12	1.7	98.3	0.0	1.91	0.72	0.79	2.55	3.4	0.003	0.53	0.0	0.04	16.55	0.00	2.005	6.64	1.42	1.5	98.5	0.0	2.41	1.27	0.72	0.86	2.39	23707	2937	2	0	6	0	0	logfile
✔	9BMB	44694	2025-06-21	2024-05-02	3.6	4.05	3.81	4.0	0.003	0.59	0.0	0.04	14.56	0.00	1.937	10.93	0.00	2.7	97.3	0.0	1.44	0.76	0.77	1.00	4.0	0.003	0.59	0.0	0.04	16.09	0.00	1.913	7.78	1.52	2.4	97.6	0.0	2.16	0.37	0.75	0.76	0.66	24617	3043	2	0	6	0	0	logfile
✔	9BM6	44689	2025-06-20	2024-05-02	3.22	3.66	3.41	3.6	0.003	0.57	0.0	0.04	17.27	0.00	2.020	9.34	0.35	2.6	97.3	0.1	1.37	0.76	0.84	2.08	3.6	0.005	0.59	0.0	0.04	17.41	0.00	1.990	8.04	2.32	3.0	96.9	0.1	1.82	0.31	0.69	0.83	2.03	23111	2858	2	0	5	0	0	logfile
✔	9BN5	44722	2025-06-20	2024-05-02	3.3	3.61	3.39	3.6	0.004	0.71	0.0	0.04	14.48	0.00	1.624	8.93	0.27	3.3	96.7	0.0	0.73	0.73	0.75	1.87	3.5	0.003	0.59	0.0	0.04	16.30	0.00	2.433	7.51	1.88	3.3	96.6	0.0	1.02	1.28	0.74	0.77	1.66	23152	2866	2	0	4	0	0	logfile
✔	9BM5	44688	2025-06-19	2024-05-02	3.5	3.91	3.64	3.8	0.005	0.87	0.0	0.04	17.21	0.01	2.096	21.55	0.21	2.4	97.6	0.0	1.01	0.75	0.74	0.94	3.8	0.004	0.67	0.0	0.04	17.55	0.00	2.471	12.27	3.38	2.5	97.5	0.0	1.14	0.41	0.74	0.75	0.91	21780	2698	2	0	4	0	0	logfile
✔	9BN1	44718	2025-06-21	2024-05-02	3.8	4.28	4.02	4.0	0.004	0.75	0.0	0.04	16.97	0.01	1.914	16.72	0.45	2.4	97.6	0.0	1.34	0.84	0.82	0.57	4.0	0.004	0.70	0.0	0.04	17.25	0.00	1.956	13.88	2.26	2.4	97.6	0.0	1.84	1.38	0.84	0.84	0.73	24476	3029	2	0	4	0	0	logfile

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