Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BMB	44694	2025-06-21	2024-05-02	3.6	4.05	3.81	4.0	0.003	0.59	0.0	0.04	14.56	0.00	1.937	10.93	0.00	2.7	97.3	0.0	1.44	0.76	0.77	1.00	4.0	0.003	0.59	0.0	0.04	16.09	0.00	1.913	7.78	1.52	2.4	97.6	0.0	2.16	0.37	0.75	0.76	0.66	24617	3043	2	0	6	0	0	logfile
✔	9BMZ	44716	2025-06-20	2024-05-02	2.97	3.29	3.11	3.3	0.004	0.60	0.0	0.04	15.12	0.01	1.330	7.21	0.12	1.7	98.3	0.0	1.91	0.73	0.81	2.79	3.3	0.004	0.57	0.0	0.04	17.11	0.00	1.904	5.34	1.84	1.7	98.3	0.0	2.16	1.34	0.68	0.83	2.83	23707	2937	2	0	6	0	0	logfile
✔	9BNL	44729	2025-06-15	2024-05-02	3.6	4.51	3.78	4.0	0.005	0.99	1.0	0.05	13.61	0.00	2.191	4.21	0.00	5.0	95.0	0.0	-1.32	0.84	0.84	2.44	4.0	0.003	0.66	0.0	0.04	13.85	0.00	2.354	5.96	1.30	4.3	95.7	0.0	-0.30	0.94	0.84	0.86	2.23	16749	1911	54	0	120	0	0	logfile
✔	9BML	44702	2025-06-20	2024-05-02	3.3	3.67	3.40	3.6	0.003	0.57	0.0	0.04	16.06	0.01	1.949	8.02	0.38	1.4	98.6	0.0	2.14	0.71	0.83	2.01	3.6	0.002	0.52	0.0	0.04	16.42	0.00	1.985	6.01	1.50	1.3	98.7	0.0	2.53	0.34	0.71	0.84	1.90	23706	2937	2	0	5	0	0	logfile
✔	9BN4	44721	2025-06-20	2024-05-02	2.9	3.20	3.03	3.3	0.004	0.71	0.0	0.04	14.83	0.01	2.098	11.61	0.04	2.5	97.3	0.1	0.80	0.67	0.78	2.25	3.2	0.003	0.64	0.0	0.04	17.03	0.00	2.480	9.57	2.44	2.8	97.1	0.1	1.27	0.54	0.64	0.77	2.29	23078	2855	2	0	4	0	0	logfile
✔	9BMV	44712	2025-06-21	2024-05-02	3.7	4.07	3.89	3.9	0.003	0.62	0.0	0.04	14.58	0.01	1.916	13.40	0.04	2.6	97.4	0.0	1.66	0.80	0.81	1.17	3.9	0.004	0.79	1.0	0.04	16.39	0.00	1.917	13.67	1.44	2.8	97.2	0.0	1.62	0.51	0.80	0.82	1.22	24616	3043	2	0	5	0	0	logfile
✔	9BMo	44705	2025-06-19	2024-05-02	3.6	4.01	3.79	3.9	0.003	0.67	0.0	0.04	17.44	0.01	2.126	14.76	0.46	2.1	97.9	0.0	1.30	0.78	0.80	1.12	3.9	0.003	0.62	0.0	0.04	17.77	0.00	2.468	10.41	2.24	2.3	97.7	0.0	1.50	1.90	0.77	0.80	1.23	21867	2711	2	0	4	0	0	logfile
✔	9BMC	44695	2025-06-21	2024-05-02	3.5	3.84	3.61	3.8	0.004	0.58	0.0	0.04	14.79	0.00	1.903	9.42	0.04	2.5	97.5	0.0	1.50	0.78	0.80	1.62	3.8	0.003	0.56	0.0	0.04	16.37	0.00	1.916	8.06	1.55	2.5	97.5	0.0	2.21	1.21	0.74	0.78	1.16	24617	3043	2	0	6	0	0	logfile
✔	9BMN	44704	2025-06-19	2024-05-02	3.8	4.15	3.91	4.0	0.004	0.65	0.0	0.04	16.54	0.01	2.163	12.45	0.25	2.1	97.9	0.0	1.17	0.79	0.76	1.13	4.0	0.004	0.69	0.0	0.04	17.28	0.00	2.476	12.06	2.45	2.4	97.6	0.0	1.63	0.90	0.80	0.80	1.26	21867	2711	2	0	4	0	0	logfile
✔	9BN3	44720	2025-06-20	2024-05-02	2.8	2.98	2.85	3.0	0.004	0.67	0.0	0.04	14.89	0.01	2.146	11.03	0.04	3.6	96.4	0.0	0.76	0.69	0.74	2.45	3.0	0.003	0.65	0.0	0.04	16.80	0.00	2.459	10.28	2.04	3.4	96.5	0.1	1.05	0.48	0.69	0.78	2.27	23152	2866	2	0	4	0	0	logfile
✔	9BM7	44690	2025-06-19	2024-05-02	3.58	4.09	3.78	4.0	0.004	0.69	0.0	0.04	17.58	0.01	2.125	13.92	0.58	3.0	96.9	0.1	1.66	0.79	0.84	1.07	4.0	0.004	0.65	0.0	0.04	17.75	0.00	2.462	10.18	2.46	2.8	97.1	0.1	1.83	0.36	0.79	0.84	0.96	21818	2703	2	0	4	0	0	logfile
✔	9BNK	44728	2025-06-15	2024-05-02	3.1	3.71	3.11	3.4	0.005	1.04	3.0	0.07	14.69	0.01	2.255	4.75	0.97	4.9	95.1	0.0	-2.04	0.84	0.87	2.41	3.4	0.003	0.63	0.0	0.04	14.50	0.00	2.452	5.66	2.18	3.4	96.6	0.0	0.02	1.25	0.85	0.89	2.81	16747	1966	33	0	93	0	0	logfile
✔	9F6V	50241	2025-06-05	2024-05-02	3.5	3.71	3.48	3.7	0.023	1.55	0.0	0.09	12.47	0.01	2.292	1.59	0.00	2.7	97.3	0.0	0.30	0.53	0.65	2.58	3.7	0.003	0.67	0.0	0.05	15.88	0.00	2.484	7.27	2.07	3.2	96.8	0.0	0.49	1.49	0.70	0.79	1.55	6610	844	3	0	1	0	0	logfile
✔	9F6Q	50238	2025-06-04	2024-05-02	3.9	4.14	3.83	4.2	0.004	0.83	0.0	0.04	15.98	0.01	2.219	16.19	2.62	4.1	95.9	0.0	1.22	0.54	0.71	0.79	4.2	0.004	1.01	0.0	0.05	16.75	0.01	2.556	19.73	5.51	4.5	95.5	0.0	1.03	0.70	0.53	0.72	0.79	3618	469	1	0	0	0	0	logfile
✔	9F6P	50237	2025-06-04	2024-05-02	3.7	3.92	3.71	4.0	0.004	0.93	0.0	0.05	18.01	0.01	2.090	19.52	2.05	2.7	97.3	0.0	1.39	0.48	0.70	1.10	4.0	0.004	0.84	0.0	0.04	17.89	0.00	2.158	14.61	7.44	3.8	96.2	0.0	1.17	0.78	0.53	0.74	0.63	3720	482	2	0	1	0	0	logfile
✔	9F6U	50240	2025-06-05	2024-05-02	3.6	3.80	3.65	4.0	0.018	1.56	0.0	0.08	11.74	0.01	2.278	7.12	0.00	3.0	97.0	0.0	-0.11	0.54	0.57	1.05	4.0	0.004	0.78	0.0	0.05	16.77	0.00	2.455	11.48	3.56	3.6	96.4	0.0	-0.58	1.02	0.59	0.65	1.08	6570	845	4	1	1	0	0	logfile
✔	9F6o	50236	2025-06-05	2024-05-02	3.9	4.30	4.08	4.2	0.004	0.80	0.0	0.04	17.49	0.00	2.268	16.41	3.07	3.2	96.8	0.0	0.92	0.55	0.76	0.55	4.2	0.004	0.76	0.0	0.04	17.34	0.00	2.516	14.56	4.71	3.4	96.6	0.0	1.27	0.52	0.56	0.76	0.69	4571	591	2	0	0	0	0	logfile
✔	9F6N	50235	2025-06-04	2024-05-02	3.6	3.87	3.61	3.8	0.008	1.20	0.0	0.05	16.58	0.01	1.906	3.91	2.80	3.4	96.6	0.0	-0.74	0.53	0.77	1.34	3.8	0.003	0.75	0.0	0.04	16.83	0.00	2.258	10.93	6.62	4.3	95.7	0.0	2.21	1.37	0.58	0.81	1.17	3652	471	2	0	1	0	0	logfile
✔	9BNM	44730	2025-06-14	2024-05-02	3.97	4.39	4.76	4.2	0.007	1.04	2.0	0.07	15.23	0.01	1.963	4.13	0.00	5.4	94.6	0.0	-1.00	0.76	0.76	1.75	4.2	0.003	0.71	0.0	0.04	14.37	0.00	2.127	8.38	2.43	4.1	95.9	0.0	-0.08	1.02	0.77	0.83	1.69	16450	1917	47	0	101	0	0	logfile
✔	9F6J	50226	2025-06-08	2024-05-01	3.9	4.11	3.86	4.0	0.003	0.90	0.0	0.04	16.08	0.01	2.253	1.83	0.00	1.1	98.9	0.0	-1.09	0.75	0.79	1.83	4.0	0.003	0.64	0.0	0.04	17.67	0.00	2.517	4.49	2.02	2.2	97.8	0.0	0.88	0.83	0.75	0.81	1.74	9751	1118	4	32	1	0	0	logfile

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