Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MEL	48217	2025-06-04	2024-12-06	3.17	3.39	3.13	3.4	0.004	0.73	0.0	0.05	20.72	0.00	2.206	4.44	1.72	3.9	96.1	0.0	3.40	0.56	0.82	1.52	3.4	0.002	0.54	0.0	0.03	15.14	0.00	2.535	2.78	2.30	2.6	97.4	0.0	4.24	0.28	0.57	0.82	2.21	3589	476	4	0	4	0	0	logfile
✔	9KWi	62611	2025-06-08	2024-12-05	3.19	3.45	3.24	3.4	0.003	0.52	0.0	0.04	16.98	0.00	1.952	8.06	2.94	3.0	96.9	0.2	1.98	0.69	0.86	2.15	3.4	0.003	0.52	0.0	0.04	17.29	0.00	1.939	6.37	3.67	3.1	96.8	0.1	2.31	1.71	0.70	0.87	1.93	9127	1190	4	0	4	0	0	logfile
✔	9ELY	48162	2025-06-04	2024-12-05	2.9	3.17	2.91	3.1	0.003	0.70	0.0	0.06	21.92	0.01	2.339	0.15	0.00	0.0	0.0	0.0	—	0.62	0.82	—	3.1	0.006	0.81	0.0	0.05	22.09	0.01	2.533	3.38	0.00	0.0	0.0	0.0	—	0.96	0.67	0.90	—	4334	0	1	202	0	0	0	logfile
✔	9MCW	48163	2025-06-11	2024-12-05	2.9	2.98	2.93	3.0	0.015	1.57	0.0	0.16	22.43	0.02	2.298	0.05	0.00	0.0	0.0	0.0	—	0.74	0.81	—	3.0	0.008	0.81	0.0	0.04	23.17	0.01	2.457	3.33	0.00	0.0	0.0	0.0	—	1.11	0.80	0.89	—	13206	0	2	616	0	0	0	logfile
✔	9ELP	48158	2025-06-20	2024-12-04	2.94	3.17	3.10	3.2	0.008	1.23	2.0	0.07	14.38	0.01	1.127	2.69	0.16	3.3	96.7	0.0	0.61	0.66	0.84	3.60	3.2	0.003	0.62	0.0	0.04	14.29	0.00	2.494	4.95	1.29	3.3	96.6	0.1	0.38	0.52	0.64	0.85	3.24	23543	2916	21	0	54	0	0	logfile
✔	9ELi	48150	2025-06-22	2024-12-04	2.82	3.02	2.91	3.1	0.019	1.30	3.0	0.06	13.85	0.01	2.066	2.18	0.00	3.3	96.7	0.0	0.03	0.68	0.86	3.16	3.0	0.003	0.62	0.0	0.04	14.52	0.00	2.450	5.10	1.33	2.6	97.1	0.3	0.20	0.44	0.70	0.84	3.04	25509	3153	21	0	57	0	0	logfile
✔	9ELE	48146	2025-06-05	2024-12-04	3.16	3.42	3.20	3.4	0.006	1.27	0.0	0.06	13.42	0.01	1.965	2.91	0.00	1.0	99.0	0.0	0.59	0.68	0.85	4.29	3.4	0.003	0.57	0.0	0.04	14.41	0.00	2.546	5.34	2.04	1.4	98.6	0.0	1.38	0.49	0.65	0.86	3.78	6529	780	8	0	13	0	0	logfile
✔	9ELQ	48159	2025-06-22	2024-12-04	2.64	2.80	2.68	2.8	0.008	1.36	9.0	0.07	13.79	0.02	1.468	7.59	0.11	2.8	97.2	0.0	0.61	0.64	0.85	3.75	2.8	0.003	0.62	0.0	0.05	14.86	0.00	2.433	6.34	1.52	2.3	97.5	0.2	0.53	0.89	0.66	0.86	3.51	25479	3150	21	0	57	0	0	logfile
✔	9ELN	48156	2025-06-22	2024-12-04	2.93	3.18	3.03	3.2	0.012	1.41	4.0	0.07	14.55	0.01	1.539	6.02	0.25	4.2	95.7	0.0	0.54	0.68	0.84	3.22	3.2	0.004	0.80	0.0	0.05	14.79	0.00	2.402	6.05	2.18	4.0	96.0	0.0	0.17	0.96	0.69	0.87	3.11	25446	3150	20	0	56	0	0	logfile
✔	9ELH	48149	2025-06-22	2024-12-04	2.98	3.23	3.07	3.2	0.008	1.23	0.0	0.06	14.91	0.01	1.909	5.32	0.04	3.6	96.4	0.0	0.59	0.69	0.86	3.76	3.2	0.003	0.67	0.0	0.05	14.45	0.00	2.216	5.62	1.96	3.4	96.6	0.1	0.36	0.47	0.66	0.85	3.25	25512	3152	20	0	59	0	0	logfile
✔	9KUS	62579	2025-06-05	2024-12-04	3.42	3.70	3.45	3.8	0.003	0.60	0.0	0.04	15.11	0.01	2.305	4.44	0.33	2.0	98.0	0.0	0.84	0.67	0.81	2.58	3.8	0.003	0.61	0.0	0.04	16.22	0.01	2.622	4.08	2.67	2.7	97.3	0.0	2.01	0.83	0.66	0.83	2.11	5488	710	2	0	0	0	0	logfile
✔	9ELo	48157	2025-06-22	2024-12-04	2.74	2.96	2.82	3.0	0.008	1.31	3.0	0.07	13.70	0.02	1.564	5.75	0.11	2.9	97.1	0.0	0.80	0.62	0.83	4.00	3.0	0.007	0.74	0.0	0.05	14.58	0.01	2.420	6.15	2.38	4.0	96.0	0.0	0.20	1.15	0.63	0.85	3.69	25446	3150	21	0	54	0	0	logfile
✔	9ELG	48148	2025-06-04	2024-12-04	3.71	3.92	3.68	3.9	0.008	1.33	3.0	0.09	13.82	0.02	2.006	2.76	0.00	3.8	96.2	0.0	0.30	0.63	0.77	3.66	3.9	0.004	0.73	0.0	0.05	13.56	0.00	2.506	7.79	3.52	4.0	96.0	0.0	-0.92	0.56	0.66	0.80	2.81	4255	510	5	0	11	0	0	logfile
✔	9EKF	48120	2025-06-15	2024-12-02	2.68	2.85	2.69	2.9	0.005	0.94	0.0	0.06	16.75	0.01	0.836	4.34	2.15	4.2	95.8	0.0	-1.19	0.46	0.67	4.39	2.9	0.004	0.71	0.0	0.05	16.84	0.00	2.547	5.13	3.17	4.0	96.0	0.0	-0.48	1.50	0.69	0.89	4.32	17537	2145	15	0	33	0	0	logfile
✔	9EKC	48119	2025-06-09	2024-12-02	3.8	4.21	3.74	18.0	0.004	0.86	0.0	0.03	15.02	0.01	2.625	5.52	0.10	0.8	99.2	0.0	1.16	0.58	0.87	0.29	19.0	0.002	0.63	0.0	0.02	17.13	0.00	2.623	5.21	4.31	0.0	100.0	0.0	7.42	1.21	0.59	0.87	-0.70	10659	1326	102	0	0	0	0	logfile
✔	9EKB	48117	2025-06-12	2024-12-02	3.65	4.27	3.76	4.2	0.005	1.02	0.0	0.04	9.44	0.00	2.205	4.69	1.91	3.5	96.4	0.1	1.07	0.77	0.76	1.86	4.2	0.003	0.55	0.0	0.04	12.57	0.00	2.573	4.80	1.98	3.3	96.5	0.1	1.65	1.29	0.78	0.77	1.27	13324	1694	5	0	2	0	0	logfile
✔	9KT3	62556	2025-06-29	2024-12-01	3.63	4.29	3.67	3.5	0.003	0.56	0.0	0.05	9.36	0.00	2.184	5.72	3.33	6.0	93.9	0.1	-3.32	0.80	0.71	1.66	3.5	0.003	0.66	0.0	0.04	12.06	0.00	2.444	7.86	1.10	6.1	93.9	0.0	-0.65	0.80	0.85	0.80	1.73	34950	4524	9	0	0	0	0	logfile
✔	9HJC	52212	2025-06-06	2024-11-28	2.1	2.26	2.09	2.3	0.006	0.71	0.0	0.05	14.74	0.00	2.469	2.34	0.00	2.5	97.5	0.0	1.01	0.60	0.79	6.45	2.3	0.003	0.50	0.0	0.04	16.02	0.00	1.851	1.69	0.23	2.3	97.7	0.0	0.78	0.25	0.60	0.79	6.07	7674	486	4	0	4	0	3806	logfile
✔	9KR7	62521	2025-06-04	2024-11-27	3.29	3.48	3.33	3.5	0.004	0.57	0.0	0.04	13.53	0.01	2.195	7.91	0.22	4.2	95.8	0.0	0.41	0.64	0.84	2.51	3.5	0.003	0.55	0.0	0.04	15.46	0.00	2.572	6.97	2.47	2.6	97.4	0.0	1.94	0.34	0.62	0.83	2.58	4261	534	2	0	1	7	0	logfile
✔	9KR6	62520	2025-06-05	2024-11-27	2.77	2.95	2.78	3.0	0.011	0.93	0.0	0.06	14.33	0.01	1.801	7.12	0.78	7.6	91.9	0.5	-3.04	0.74	0.84	4.83	3.0	0.003	0.61	0.0	0.04	16.89	0.00	2.570	5.04	2.86	4.9	95.1	0.0	-0.05	0.50	0.69	0.84	4.06	6760	830	4	0	0	0	0	logfile

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