Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9KRH	62527	2025-06-04	2024-11-27	3.4	3.59	3.40	3.6	0.005	0.72	1.0	0.04	13.22	0.00	2.213	14.04	0.23	4.5	95.3	0.2	0.13	0.58	0.76	2.46	3.6	0.004	0.71	0.0	0.04	16.65	0.00	2.267	12.73	3.86	3.8	96.2	0.0	1.48	0.86	0.59	0.79	1.74	4231	532	2	0	3	0	0	logfile
✔	9KR7	62521	2025-06-04	2024-11-27	3.29	3.48	3.33	3.5	0.004	0.57	0.0	0.04	13.53	0.01	2.195	7.91	0.22	4.2	95.8	0.0	0.41	0.64	0.84	2.51	3.5	0.003	0.55	0.0	0.04	15.46	0.00	2.572	6.97	2.47	2.6	97.4	0.0	1.94	0.34	0.62	0.83	2.58	4261	534	2	0	1	7	0	logfile
✔	9KQi	62505	2025-06-06	2024-11-26	3.02	3.23	3.12	3.4	0.005	0.56	0.0	0.04	25.03	0.00	2.205	9.25	0.44	1.7	98.3	0.0	-0.77	0.58	0.81	3.72	3.4	0.005	0.60	0.0	0.04	21.17	0.00	2.408	7.51	3.82	1.9	98.1	0.0	1.28	1.10	0.56	0.80	3.56	7082	756	4	0	22	0	0	logfile
✔	9Eio	48088	2025-06-13	2024-11-26	3.62	3.88	3.51	3.8	0.002	0.54	0.0	0.04	14.22	0.00	2.208	4.41	0.00	8.4	91.6	0.0	-2.10	0.56	0.69	1.46	3.8	0.004	0.96	1.0	0.04	16.45	0.00	2.251	5.10	2.18	7.9	91.9	0.1	-1.62	0.52	0.56	0.69	0.74	14654	1924	18	0	12	4	0	logfile
✔	9KQJ	62506	2025-06-06	2024-11-26	2.95	3.19	3.04	3.3	0.005	0.62	0.0	0.04	26.55	0.00	2.099	9.36	3.24	2.3	97.7	0.0	-0.91	0.57	0.79	3.55	3.3	0.003	0.60	0.0	0.04	21.05	0.00	2.352	6.77	1.92	1.9	98.1	0.0	1.55	0.34	0.56	0.79	3.59	7056	754	4	0	22	0	0	logfile
✔	9EiJ	48085	2025-06-15	2024-11-26	3.3	3.83	3.29	3.5	0.002	0.65	0.0	0.04	13.60	0.01	2.236	1.92	0.96	3.3	96.6	0.0	0.53	0.67	0.79	2.34	3.5	0.004	0.76	0.0	0.04	16.24	0.00	2.347	7.55	1.58	2.5	97.5	0.0	1.65	1.02	0.68	0.81	1.70	16970	2121	22	0	9	0	0	logfile
✔	9EHZ	48071	2025-06-27	2024-11-25	2.6	2.14	2.52	1.9	0.004	0.76	1.0	0.07	13.98	0.01	1.481	11.70	4.45	5.0	94.7	0.3	0.33	0.82	0.83	3.99	1.9	0.004	0.74	1.0	0.05	17.43	0.00	1.961	11.13	2.79	5.1	94.6	0.2	0.17	1.24	0.82	0.83	3.41	32125	3906	22	46	9	0	0	logfile
✔	9Ei2	48074	2025-06-04	2024-11-25	2.8	2.23	3.03	1.9	0.004	0.58	0.0	0.04	19.85	0.00	2.155	11.31	4.96	7.6	91.6	0.8	-0.10	0.54	0.77	2.52	1.9	0.004	0.59	0.0	0.04	19.62	0.00	2.585	8.77	4.96	6.8	92.4	0.8	0.11	0.25	0.54	0.79	2.38	2182	267	2	0	0	0	0	logfile
✔	9KQE	62501	2025-06-04	2024-11-25	3.0	3.27	3.03	3.2	0.008	0.87	0.0	0.05	13.46	0.01	2.237	9.43	1.68	3.3	96.7	0.0	-2.23	0.53	0.78	2.13	3.2	0.004	0.81	0.0	0.04	16.83	0.00	2.579	11.17	2.35	1.4	98.6	0.0	1.57	1.48	0.55	0.80	1.15	2795	373	2	0	1	0	0	logfile
✔	9KQA	62498	2025-06-04	2024-11-25	3.28	3.78	3.25	3.7	0.005	0.79	0.0	0.04	17.32	0.01	2.211	11.22	0.35	5.7	94.3	0.0	-2.72	0.46	0.72	1.02	3.7	0.003	0.71	0.0	0.04	17.55	0.00	2.510	6.23	2.80	3.2	96.8	0.0	1.60	0.55	0.47	0.73	0.81	2783	377	2	0	1	0	0	logfile
✔	9KQC	62500	2025-06-05	2024-11-25	3.36	4.35	3.40	4.0	0.005	0.90	0.0	0.05	18.53	0.00	2.172	23.79	8.51	5.3	93.7	1.0	0.10	0.64	0.74	1.80	4.0	0.003	0.71	0.0	0.04	17.48	0.00	2.179	11.43	5.48	2.0	97.8	0.2	1.24	1.71	0.67	0.83	2.18	4924	607	3	0	2	0	0	logfile
✔	9KQF	62503	2025-06-06	2024-11-25	3.25	3.45	3.34	3.5	0.005	0.62	0.0	0.04	26.74	0.00	2.176	11.57	0.29	4.0	96.0	0.0	0.73	0.55	0.80	3.54	3.5	0.003	0.55	0.0	0.04	20.71	0.00	2.536	8.99	5.16	2.9	97.1	0.0	2.95	1.11	0.54	0.79	3.20	7066	754	4	0	20	0	0	logfile
✔	9EHM	48060	2025-06-20	2024-11-23	4.2	3.92	4.13	3.7	0.007	1.04	0.0	0.15	19.59	0.01	1.433	19.55	0.72	6.3	93.7	0.0	-2.26	0.85	0.76	—	3.7	0.003	0.84	0.0	0.05	13.72	0.00	2.319	13.56	0.04	6.0	94.0	0.0	-1.71	1.35	0.86	0.78	—	23943	2898	47	0	99	0	0	logfile
✔	9KPo	62489	2025-06-09	2024-11-23	3.98	4.14	4.03	3.9	0.008	1.23	0.0	0.14	26.22	0.00	2.169	6.40	0.00	0.0	0.0	0.0	—	0.65	0.44	—	4.0	0.007	1.04	0.0	0.05	27.01	0.01	2.161	37.15	0.00	0.0	0.0	0.0	—	2.01	0.73	0.61	—	10618	0	2	498	0	0	0	logfile
✔	9KPE	62485	2025-06-07	2024-11-22	3.35	2.36	3.59	2.1	0.004	0.76	0.0	0.05	15.54	0.00	2.151	20.23	0.00	5.9	94.1	0.0	-0.21	0.72	0.71	2.13	2.1	0.004	0.70	0.0	0.05	16.34	0.00	2.464	14.76	4.29	5.6	94.4	0.0	0.09	1.50	0.72	0.71	2.04	8916	1127	6	0	1	0	0	logfile
✔	9HHQ	52173	2025-06-04	2024-11-22	3.5	4.08	3.44	3.9	0.003	0.72	0.0	0.05	14.16	0.01	2.283	7.67	0.00	3.3	96.7	0.0	-0.94	0.54	0.75	1.70	3.9	0.005	0.90	0.0	0.05	17.14	0.01	2.473	18.64	3.62	4.4	95.6	0.0	-0.24	2.25	0.56	0.77	0.64	2818	369	1	0	0	0	0	logfile
✔	9KPF	62486	2025-06-07	2024-11-22	3.15	2.28	3.24	2.1	0.003	0.64	0.0	0.04	16.07	0.00	2.208	9.92	0.10	4.6	95.4	0.0	0.89	0.76	0.74	2.42	2.1	0.003	0.63	0.0	0.04	16.91	0.00	2.465	5.86	4.39	4.3	95.7	0.0	0.94	0.33	0.75	0.74	2.25	8914	1127	6	0	1	0	0	logfile
✔	9KPD	62484	2025-06-06	2024-11-22	2.84	2.22	3.01	2.0	0.012	1.09	3.0	0.08	16.05	0.01	2.003	26.15	2.56	4.3	95.2	0.5	0.01	0.75	0.75	2.97	2.0	0.005	0.66	0.0	0.04	16.63	0.00	2.539	10.24	2.89	3.4	96.5	0.1	0.67	0.46	0.77	0.78	2.84	8237	1035	6	0	1	0	0	logfile
✔	9KPH	62487	2025-06-09	2024-11-22	3.93	4.09	3.97	3.8	0.008	1.22	0.0	0.14	26.76	0.00	2.162	6.65	0.00	0.0	0.0	0.0	—	0.67	0.45	—	4.0	0.006	0.97	0.0	0.05	27.27	0.01	2.131	29.56	0.00	0.0	0.0	0.0	—	2.16	0.73	0.62	—	10618	0	2	498	0	0	0	logfile
✔	9EGS	47996	2025-06-14	2024-11-21	2.45	2.71	2.44	2.7	0.002	0.48	0.0	0.04	12.60	0.00	2.329	5.61	0.30	1.9	98.1	0.0	0.65	0.73	0.87	4.69	2.7	0.004	0.58	0.0	0.04	14.44	0.00	2.267	7.91	0.48	1.3	98.7	0.0	1.36	0.22	0.74	0.88	4.43	15805	1885	15	0	15	270	0	logfile

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