Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D0B	27104	2022-07-06	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.50	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.003	0.51	0.0	0.04	15.95	0.00	2.167	6.18	0.06	3.8	96.1	0.0	1.28	0.21	0.87	0.83	1.73	29367	3630	8	15	0	0	0	logfile
✔	8D0K	27107	2022-07-06	2022-05-26	4.27	4.58	4.33	4.3	0.002	0.50	0.0	0.04	14.88	0.00	2.188	9.60	0.06	3.7	96.1	0.1	0.70	0.82	0.81	—	4.3	0.003	0.55	0.0	0.04	14.88	0.00	2.170	11.15	0.00	4.9	95.0	0.1	0.61	0.28	0.82	0.80	—	31011	3820	8	20	0	0	0	logfile
✔	8CZo	27100	2022-07-06	2022-05-25	4.3	2.75	4.13	2.2	0.004	0.75	0.0	0.04	16.53	0.00	2.084	18.96	0.00	10.9	89.1	0.0	-2.32	0.50	0.66	—	1.8	0.004	0.89	0.0	0.05	14.10	0.01	2.033	16.83	0.05	9.1	90.9	0.0	-0.71	1.45	0.50	0.65	—	34518	4268	44	0	0	0	0	logfile
✔	8CZD	27095	2022-07-04	2022-05-24	4.6	4.07	4.58	4.4	0.005	0.90	0.0	0.05	16.56	0.00	2.121	23.92	0.00	8.7	91.3	0.0	-0.30	0.46	0.65	—	4.2	0.004	0.89	0.0	0.05	15.77	0.00	2.097	31.08	0.00	8.7	91.3	0.0	-1.10	2.32	0.44	0.61	—	17640	2120	20	0	0	0	0	logfile
✔	8CTL	26994	2022-07-03	2022-05-16	3.1	3.52	3.12	3.3	0.009	1.32	4.0	0.09	24.25	0.01	2.280	32.18	7.20	12.1	87.4	0.5	-5.68	0.62	0.46	0.80	3.3	0.003	0.67	0.0	0.04	20.87	0.00	1.956	11.51	0.58	3.3	96.7	0.0	-0.66	2.44	0.80	0.80	2.22	8138	401	4	233	0	0	0	logfile
✔	8CSZ	26976	2022-07-03	2022-05-13	3.2	3.55	3.13	3.3	0.005	0.67	0.0	0.04	19.39	0.00	1.962	11.85	0.00	4.9	95.1	0.0	-0.97	0.84	0.86	4.03	3.3	0.004	0.59	0.0	0.03	19.19	0.00	1.963	10.50	0.00	5.1	94.9	0.0	-0.36	1.12	0.84	0.88	3.50	8948	494	5	236	3	0	0	logfile
✔	7XR4	33407	2022-07-03	2022-05-09	3.4	3.26	3.35	3.4	0.007	0.94	0.0	0.05	14.23	0.00	2.304	10.91	0.29	2.1	97.9	0.0	1.68	0.73	0.85	1.65	3.4	0.003	0.54	0.0	0.04	15.08	0.00	2.218	9.53	0.10	1.2	98.8	0.0	2.73	0.38	0.72	0.85	1.38	10026	1278	6	0	27	0	0	logfile
✔	7XPX	33385	2022-07-04	2022-05-06	3.2	3.32	3.18	3.3	0.004	0.59	0.0	0.04	27.71	0.00	2.185	10.27	0.00	3.6	96.4	0.0	0.82	0.67	0.79	2.86	3.3	0.004	0.55	0.0	0.03	27.70	0.00	2.165	9.00	0.51	2.6	97.3	0.1	1.48	1.06	0.59	0.80	2.18	13408	934	11	290	1	0	0	logfile
✔	7ZRC	14910	2022-07-06	2022-05-04	3.5	3.13	3.03	3.0	0.006	0.60	0.0	0.05	9.83	0.01	2.125	7.57	0.99	3.3	96.7	0.0	-0.03	0.71	0.72	2.99	3.0	0.003	0.54	0.0	0.04	12.56	0.00	2.126	7.34	0.09	2.9	97.1	0.0	0.31	0.51	0.72	0.73	2.57	30724	3852	24	0	52	0	0	logfile
✔	7ZR9	14887	2022-07-06	2022-05-03	4.0	4.37	4.12	4.1	0.006	0.84	3.0	0.05	10.50	0.01	2.158	8.66	1.22	3.7	96.2	0.1	-0.10	0.81	0.77	—	4.1	0.008	0.81	0.0	0.04	13.36	0.00	1.947	13.44	0.03	3.8	96.2	0.0	0.26	0.68	0.82	0.78	—	31014	3899	24	0	54	0	0	logfile
✔	7ZR7	14885	2022-07-07	2022-05-03	3.7	4.34	3.77	3.8	0.003	0.50	0.0	0.04	9.80	0.00	2.034	6.24	0.75	3.7	96.3	0.0	-0.63	0.85	0.79	1.17	3.8	0.003	0.59	0.0	0.04	12.64	0.00	2.110	11.69	0.24	3.3	96.7	0.0	0.23	0.77	0.86	0.82	1.15	30764	3878	24	0	54	0	0	logfile
✔	7XoC	33344	2022-07-03	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.48	0.0	0.04	9.17	0.00	2.149	5.42	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.1	0.005	0.69	0.0	0.04	16.39	0.01	2.183	8.84	1.61	3.2	96.8	0.0	0.81	1.38	0.77	0.82	3.46	6432	786	5	0	5	0	0	logfile
✔	7Xo6	33338	2022-07-03	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.55	0.0	0.08	13.22	0.01	2.075	2.70	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.004	0.63	0.0	0.04	17.08	0.01	2.108	8.98	1.61	2.3	97.7	0.0	0.72	2.10	0.79	0.82	3.13	6440	786	5	0	5	0	0	logfile
✔	7Xo9	33341	2022-07-03	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.46	0.0	0.06	13.13	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	2.0	0.005	0.68	0.0	0.04	17.69	0.00	2.015	10.81	2.16	3.8	96.2	0.0	0.02	0.66	0.77	0.80	2.87	6483	793	2	0	5	0	0	logfile
✔	7XoH	33348	2022-07-03	2022-05-01	3.6	3.64	3.56	3.6	0.004	0.58	0.0	0.04	12.55	0.00	2.005	33.04	4.34	10.6	89.3	0.1	-4.16	0.72	0.83	2.38	3.6	0.003	0.68	0.0	0.04	14.70	0.00	2.116	9.33	0.07	7.4	92.6	0.0	-1.58	0.56	0.73	0.83	2.18	13524	1832	8	0	4	0	0	logfile
✔	7XoD	33345	2022-07-07	2022-05-01	3.27	2.34	3.34	2.1	0.003	0.58	1.0	0.04	14.00	0.00	1.716	4.12	0.16	4.8	95.2	0.0	-2.45	0.68	0.69	2.09	2.1	0.003	0.68	0.0	0.05	15.99	0.01	2.054	8.68	0.32	5.1	94.9	0.0	-0.59	1.01	0.70	0.75	2.24	36173	4742	17	0	39	0	0	logfile
✔	7XoA	33342	2022-07-06	2022-05-01	3.2	2.32	3.20	2.1	0.002	0.54	0.0	0.04	9.21	0.01	1.863	8.87	0.06	2.8	97.2	0.1	-2.65	0.59	0.48	1.63	2.0	0.003	0.66	0.0	0.04	14.32	0.00	2.142	9.45	0.48	4.7	95.3	0.0	-0.85	0.80	0.73	0.76	2.33	29202	3670	8	0	35	0	0	logfile
✔	7Xo8	33340	2022-07-07	2022-05-01	3.48	2.53	3.64	2.1	0.003	0.70	11.0	0.07	13.54	0.01	1.275	8.01	0.45	3.6	96.3	0.2	-2.72	0.58	0.47	0.91	2.1	0.004	0.74	0.0	0.05	16.27	0.01	2.129	11.37	0.31	4.8	95.2	0.0	-0.54	1.90	0.68	0.73	1.56	39126	4863	12	0	45	0	0	logfile
✔	7Xo5	33337	2022-07-06	2022-05-01	3.13	2.30	3.19	2.1	0.004	0.92	1.0	0.06	15.32	0.01	1.796	4.00	0.07	5.0	95.0	0.0	-4.22	0.71	0.71	1.77	2.1	0.008	0.83	1.0	0.05	16.81	0.00	2.072	9.99	0.58	4.3	95.7	0.0	-0.73	1.35	0.74	0.77	2.43	28503	3659	8	0	38	0	0	logfile
✔	7Xo4	33336	2022-07-06	2022-04-30	3.24	2.35	3.35	2.1	0.002	0.48	0.0	0.04	10.18	0.00	1.184	7.21	0.00	2.0	98.0	0.0	-2.83	0.52	0.40	1.77	2.1	0.004	0.67	0.0	0.05	14.95	0.00	2.121	9.45	0.37	4.4	95.6	0.0	-0.74	1.09	0.70	0.76	2.20	33410	4252	10	0	41	0	0	logfile

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