Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XLM	38453	2024-07-25	2023-12-26	3.22	3.64	3.18	3.5	0.004	0.60	0.0	0.04	19.13	0.01	2.148	7.31	0.16	9.2	90.5	0.3	-0.71	0.77	0.76	1.66	3.5	0.003	0.59	0.0	0.04	17.61	0.00	2.136	8.73	3.38	8.2	91.6	0.3	-0.96	0.44	0.81	0.86	1.81	28596	3529	18	0	57	0	0	logfile
✔	8XLN	38454	2024-07-20	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.002	0.58	0.0	0.04	16.39	0.00	2.165	7.23	2.02	6.0	94.0	0.0	0.51	1.07	0.79	0.82	1.15	6593	789	8	0	15	0	0	logfile
✔	8XKN	38421	2024-07-28	2023-12-23	3.11	3.40	3.25	3.4	0.005	0.60	0.0	0.05	16.55	0.00	2.145	5.52	0.32	4.4	95.6	0.0	-1.42	0.77	0.86	3.34	3.3	0.005	0.53	0.0	0.05	17.07	0.00	2.118	4.84	5.62	5.7	94.3	0.0	-1.46	0.89	0.77	0.87	3.56	45888	5808	24	0	0	0	0	logfile
✔	8VFV	43190	2024-07-23	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.20	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.004	0.75	0.0	0.04	13.98	0.00	1.546	10.62	2.71	3.3	96.7	0.1	0.38	0.49	0.71	0.86	3.28	21240	2607	29	0	72	0	0	logfile
✔	8XJL	38400	2024-07-19	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.006	0.64	0.0	0.05	14.80	0.00	2.208	7.88	1.58	2.4	97.6	0.0	1.57	0.58	0.69	0.81	3.46	8846	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2024-07-19	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.53	0.0	0.04	14.62	0.00	2.162	7.82	3.06	1.7	98.3	0.0	2.27	0.52	0.68	0.83	4.06	8849	1140	6	0	1	0	0	logfile
✔	8RJL	19251	2024-07-27	2023-12-21	3.34	3.79	3.44	3.8	0.012	1.32	12.0	0.07	16.84	0.01	1.607	10.76	4.59	12.5	86.4	1.1	-5.23	0.66	0.76	1.32	3.8	0.003	0.79	0.0	0.04	17.00	0.00	2.025	4.52	2.31	4.4	95.6	0.0	0.16	0.64	0.62	0.73	0.77	36300	4575	18	0	0	0	0	logfile
✔	8XJ7	38395	2024-07-22	2023-12-20	2.74	3.10	2.92	3.0	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.003	0.60	0.0	0.04	16.82	0.00	2.006	8.71	3.00	5.5	94.3	0.3	-0.35	0.33	0.75	0.85	3.26	19595	2420	13	6	9	0	0	logfile
✔	8XJ8	38396	2024-07-21	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.003	0.62	0.0	0.04	17.80	0.00	2.013	7.29	1.77	4.2	95.4	0.4	0.00	2.09	0.76	0.87	2.84	15904	1957	10	6	6	0	0	logfile
✔	8XJ6	38394	2024-07-23	2023-12-20	3.32	3.84	3.59	3.7	0.005	0.75	0.0	0.05	14.55	0.00	2.196	12.87	0.40	3.7	95.8	0.5	-0.25	0.76	0.78	1.67	3.7	0.004	0.64	0.0	0.04	15.04	0.00	2.089	13.45	1.66	4.5	95.2	0.3	0.01	0.59	0.76	0.80	1.50	22688	2807	12	0	8	0	0	logfile
✔	8XJ4	38393	2024-07-19	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.69	0.0	0.04	17.63	0.01	2.278	5.47	1.26	3.8	96.2	0.0	1.68	1.19	0.69	0.79	2.39	5820	693	6	0	12	0	0	logfile
✔	8VE4	43164	2024-07-18	2023-12-18	3.3	3.35	3.10	3.3	0.003	0.56	0.0	0.05	10.45	0.01	2.302	7.13	0.00	1.3	98.7	0.0	1.77	0.74	0.75	4.32	3.3	0.003	0.62	0.0	0.05	12.96	0.01	2.327	9.17	3.81	2.2	97.8	0.0	0.26	0.42	0.75	0.78	3.76	3148	465	4	0	0	0	0	logfile
✔	8VE0	43160	2024-07-18	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.003	0.56	0.0	0.05	15.19	0.00	2.187	8.14	2.28	1.7	98.3	0.0	1.20	0.36	0.74	0.81	3.50	3527	466	6	0	2	0	0	logfile
✔	8VE7	43167	2024-07-18	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.64	0.0	0.04	14.64	0.00	2.280	10.34	1.27	2.1	97.9	0.0	2.97	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8Ri9	19184	2024-07-18	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.002	0.48	0.0	0.05	11.26	0.00	2.207	4.50	1.90	11.3	88.7	0.0	-1.22	0.62	0.29	0.63	5.87	4230	295	5	0	0	0	2180	logfile
✔	8VE2	43162	2024-07-18	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.003	0.59	0.0	0.05	13.04	0.01	2.225	9.06	6.42	2.8	97.2	0.0	0.05	0.71	0.76	0.79	3.89	3105	465	4	0	0	0	0	logfile
✔	8VE1	43161	2024-07-18	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.004	0.60	0.0	0.05	16.00	0.00	2.242	6.46	2.86	2.4	97.6	0.0	-0.11	0.40	0.76	0.88	4.97	3656	466	10	0	2	27	0	logfile
✔	8VDZ	43157	2024-07-23	2023-12-18	2.7	2.80	2.60	2.8	0.003	0.46	0.0	0.04	11.96	0.00	2.056	4.30	0.00	0.2	99.8	0.0	3.43	0.72	0.84	4.07	2.8	0.003	0.43	0.0	0.04	16.53	0.00	2.061	5.69	2.14	0.4	99.6	0.0	3.43	0.33	0.72	0.86	3.43	23700	3087	24	0	0	0	0	logfile
✔	8VE3	43163	2024-07-18	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.003	0.63	0.0	0.05	13.37	0.01	2.299	9.22	5.08	3.9	96.1	0.0	0.23	0.69	0.75	0.79	4.18	3210	466	4	0	0	0	0	logfile
✔	8RHZ	19179	2024-07-21	2023-12-17	3.37	2.52	3.41	2.2	0.007	0.62	0.0	0.04	12.49	0.00	1.789	4.92	0.12	6.5	93.5	0.0	-1.29	0.76	0.78	2.52	2.2	0.003	0.53	0.0	0.04	13.27	0.00	2.047	3.10	1.43	3.2	96.8	0.0	3.19	0.90	0.76	0.80	2.12	15223	2439	6	0	6	0	0	logfile

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