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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8UMP | 42381 | 2024-07-23 | 2023-10-18 | 2.92 | 3.27 | 3.11 | 3.3 | 0.007 | 0.74 | 0.0 | 0.04 | 19.06 | 0.01 | 2.226 | 7.20 | 0.69 | 0.4 | 99.6 | 0.0 | 1.18 | 0.67 | 0.87 | 4.31 | 3.3 | 0.002 | 0.48 | 0.0 | 0.03 | 18.90 | 0.00 | 2.266 | 8.06 | 2.34 | 1.0 | 99.0 | 0.0 | 3.70 | 0.38 | 0.69 | 0.87 | 3.90 | 21432 | 2724 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8UMW | 42386 | 2024-07-23 | 2023-10-18 | 2.93 | 3.19 | 3.06 | 3.2 | 0.004 | 0.69 | 1.0 | 0.05 | 15.13 | 0.01 | 2.045 | 6.48 | 1.90 | 2.5 | 97.5 | 0.0 | -1.73 | 0.73 | 0.83 | 2.90 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 17.62 | 0.00 | 1.908 | 9.51 | 3.29 | 2.1 | 97.9 | 0.0 | 0.86 | 1.02 | 0.74 | 0.87 | 2.74 | 21860 | 2647 | 15 | 47 | 9 | 0 | 0 | logfile |
✔ | 8UMT | 42383 | 2024-07-23 | 2023-10-18 | 3.33 | 3.59 | 3.44 | 3.5 | 0.004 | 0.75 | 0.0 | 0.05 | 14.62 | 0.01 | 2.048 | 9.08 | 4.14 | 3.6 | 96.3 | 0.0 | -2.12 | 0.75 | 0.71 | 1.12 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 16.49 | 0.00 | 1.882 | 16.64 | 4.10 | 4.1 | 95.9 | 0.0 | -0.11 | 1.78 | 0.77 | 0.75 | 0.94 | 20697 | 2625 | 12 | 0 | 7 | 0 | 0 | logfile |
✔ | 8WTJ | 37835 | 2024-07-25 | 2023-10-18 | 4.64 | 6.17 | 5.24 | 4.7 | 0.003 | 0.85 | 0.0 | 0.05 | 14.83 | 0.01 | 2.239 | 9.97 | 0.03 | 8.6 | 91.3 | 0.0 | -2.46 | 0.84 | 0.80 | — | 4.7 | 0.010 | 0.74 | 0.0 | 0.04 | 14.47 | 0.01 | 2.088 | 28.62 | 0.03 | 11.0 | 88.9 | 0.0 | -2.07 | 0.45 | 0.83 | 0.60 | — | 29931 | 3793 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8UMC | 42375 | 2024-07-19 | 2023-10-17 | 2.5 | 2.12 | 2.52 | 1.9 | 0.005 | 0.68 | 0.0 | 0.05 | 17.53 | 0.01 | 2.045 | 9.69 | 1.16 | 2.9 | 96.9 | 0.1 | -0.80 | 0.82 | 0.81 | 3.65 | 1.8 | 0.004 | 0.63 | 0.0 | 0.04 | 18.06 | 0.01 | 2.121 | 12.29 | 3.75 | 2.5 | 97.5 | 0.0 | 0.13 | 0.38 | 0.82 | 0.81 | 3.23 | 7198 | 890 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8WSS | 37823 | 2024-07-19 | 2023-10-17 | 3.01 | 2.86 | 2.95 | 3.1 | 0.002 | 0.46 | 0.0 | 0.04 | 9.95 | 0.00 | 2.082 | 6.49 | 0.43 | 2.3 | 97.7 | 0.0 | 1.40 | 0.71 | 0.83 | 2.49 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.28 | 0.00 | 2.148 | 9.30 | 2.35 | 3.4 | 96.4 | 0.2 | 0.84 | 0.65 | 0.72 | 0.87 | 2.89 | 8797 | 1143 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8UMD | 42376 | 2024-07-19 | 2023-10-17 | 3.6 | 4.61 | 3.60 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.78 | 0.01 | 2.098 | 13.27 | 0.50 | 4.9 | 94.8 | 0.3 | 0.54 | 0.50 | 0.80 | 0.85 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 17.13 | 0.00 | 2.101 | 16.96 | 3.26 | 4.9 | 94.8 | 0.3 | 0.75 | 1.76 | 0.51 | 0.85 | 0.71 | 7201 | 911 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WST | 37824 | 2024-07-19 | 2023-10-17 | 2.4 | 2.03 | 2.39 | 2.4 | 0.002 | 0.45 | 1.0 | 0.04 | 8.87 | 0.00 | 2.158 | 4.97 | 0.22 | 3.1 | 96.9 | 0.0 | 2.41 | 0.64 | 0.75 | 3.44 | 2.3 | 0.003 | 0.60 | 0.0 | 0.04 | 14.84 | 0.00 | 2.157 | 6.61 | 2.55 | 4.1 | 95.8 | 0.1 | 1.30 | 1.45 | 0.65 | 0.81 | 3.79 | 8286 | 1055 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WRo | 37784 | 2024-07-25 | 2023-10-15 | 3.9 | 4.30 | 3.87 | 4.0 | 0.004 | 0.79 | 0.0 | 0.05 | 18.35 | 0.01 | 2.237 | 8.70 | 0.33 | 8.4 | 91.4 | 0.1 | -2.06 | 0.79 | 0.69 | 0.35 | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 18.45 | 0.00 | 2.129 | 16.33 | 2.93 | 6.8 | 93.1 | 0.1 | -1.46 | 1.88 | 0.83 | 0.81 | 1.04 | 29807 | 3780 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WRL | 37779 | 2024-07-19 | 2023-10-15 | 3.36 | 3.59 | 3.33 | 3.7 | 0.004 | 0.70 | 0.0 | 0.05 | 19.51 | 0.00 | 1.771 | 9.25 | 0.58 | 4.5 | 95.5 | 0.0 | -0.27 | 0.54 | 0.77 | 1.66 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 17.32 | 0.00 | 2.222 | 8.85 | 4.18 | 3.7 | 96.3 | 0.0 | 0.43 | 0.34 | 0.52 | 0.77 | 1.40 | 6472 | 790 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 8WRM | 37781 | 2024-07-25 | 2023-10-15 | 4.34 | 4.58 | 4.54 | 4.2 | 0.004 | 0.89 | 0.0 | 0.05 | 14.47 | 0.01 | 2.196 | 7.52 | 0.03 | 8.4 | 91.5 | 0.1 | -2.50 | 0.80 | 0.76 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 14.26 | 0.00 | 2.093 | 17.10 | 0.12 | 9.4 | 90.5 | 0.1 | -1.48 | 0.71 | 0.81 | 0.78 | — | 29931 | 3793 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WRH | 37776 | 2024-07-19 | 2023-10-14 | 3.08 | 3.33 | 3.08 | 3.4 | 0.004 | 0.68 | 1.0 | 0.05 | 18.70 | 0.00 | 2.151 | 9.11 | 0.00 | 4.8 | 94.8 | 0.4 | 0.28 | 0.61 | 0.83 | 2.27 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 17.71 | 0.00 | 2.098 | 7.68 | 1.30 | 5.0 | 95.0 | 0.0 | 0.95 | 0.88 | 0.59 | 0.82 | 1.94 | 6459 | 790 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 8UKM | 42355 | 2024-07-24 | 2023-10-14 | 4.2 | 4.65 | 4.50 | 4.5 | 0.004 | 0.75 | 0.0 | 0.05 | 13.15 | 0.01 | 2.220 | 21.35 | 0.00 | 4.5 | 95.5 | 0.0 | 0.17 | 0.81 | 0.81 | — | 4.5 | 0.003 | 0.73 | 0.0 | 0.05 | 13.25 | 0.01 | 2.198 | 18.16 | 0.00 | 4.5 | 95.5 | 0.0 | 0.33 | 0.56 | 0.82 | 0.82 | — | 26184 | 3528 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8WR4 | 37762 | 2024-07-25 | 2023-10-13 | 3.07 | 2.37 | 3.12 | 2.0 | 0.004 | 0.57 | 0.0 | 0.04 | 19.22 | 0.00 | 1.974 | 10.44 | 0.33 | 4.6 | 95.3 | 0.1 | -0.06 | 0.66 | 0.71 | 1.72 | 2.0 | 0.004 | 0.59 | 0.0 | 0.04 | 20.01 | 0.00 | 2.082 | 10.35 | 1.96 | 4.8 | 95.1 | 0.1 | 0.10 | 1.17 | 0.71 | 0.74 | 1.83 | 30250 | 2922 | 10 | 282 | 2 | 0 | 0 | logfile |
✔ | 8WQR | 37752 | 2024-07-20 | 2023-10-12 | 3.08 | 4.11 | 3.07 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 12.19 | 0.00 | 2.166 | 13.13 | 0.00 | 6.8 | 93.0 | 0.2 | -2.46 | 0.81 | 0.66 | 1.89 | 3.5 | 0.004 | 0.69 | 0.0 | 0.05 | 14.11 | 0.00 | 2.144 | 15.84 | 2.60 | 8.4 | 91.4 | 0.1 | -2.82 | 0.45 | 0.82 | 0.69 | 1.43 | 9681 | 1415 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8UKD | 42352 | 2024-07-24 | 2023-10-12 | 2.9 | 3.06 | 3.10 | 3.1 | 0.006 | 0.83 | 0.0 | 0.06 | 14.07 | 0.01 | 2.280 | 2.78 | 0.04 | 4.7 | 95.3 | 0.0 | -1.52 | 0.68 | 0.79 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 15.70 | 0.00 | 2.180 | 5.98 | 1.77 | 4.3 | 95.6 | 0.0 | 0.06 | 0.37 | 0.73 | 0.83 | 2.87 | 24777 | 3123 | 6 | 0 | 27 | 0 | 0 | logfile |
✔ | 8QTD | 18649 | 2024-07-18 | 2023-10-12 | 3.6 | 3.77 | 3.60 | 3.8 | 0.002 | 0.49 | 0.0 | 0.04 | 9.32 | 0.00 | 2.298 | 6.23 | 2.63 | 4.5 | 95.5 | 0.0 | 0.45 | 0.56 | 0.79 | 3.01 | 3.7 | 0.004 | 0.61 | 0.0 | 0.04 | 13.98 | 0.00 | 2.133 | 11.18 | 3.51 | 5.0 | 95.0 | 0.0 | -0.29 | 0.92 | 0.56 | 0.80 | 2.68 | 3219 | 413 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8UKF | 42353 | 2024-07-24 | 2023-10-12 | 3.1 | 3.23 | 3.07 | 3.2 | 0.006 | 0.81 | 0.0 | 0.06 | 14.34 | 0.01 | 2.279 | 2.98 | 0.00 | 4.1 | 95.9 | 0.0 | -1.31 | 0.65 | 0.81 | 3.05 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 15.01 | 0.00 | 2.203 | 4.84 | 1.66 | 3.6 | 96.4 | 0.0 | 0.18 | 0.32 | 0.67 | 0.83 | 2.87 | 24964 | 3123 | 12 | 0 | 41 | 0 | 0 | logfile |
✔ | 8WQW | 37756 | 2024-07-21 | 2023-10-12 | 3.27 | 2.51 | 3.28 | 1.9 | 0.005 | 0.70 | 0.0 | 0.05 | 13.42 | 0.01 | 2.125 | 9.31 | 0.10 | 5.2 | 94.8 | 0.0 | -0.92 | 0.71 | 0.67 | 2.47 | 1.8 | 0.003 | 0.66 | 0.0 | 0.05 | 15.35 | 0.00 | 2.121 | 10.33 | 3.04 | 5.6 | 94.4 | 0.0 | -0.85 | 1.58 | 0.74 | 0.71 | 1.89 | 8972 | 1174 | 8 | 0 | 5 | 0 | 0 | logfile |
✔ | 8WQE | 37742 | 2024-07-26 | 2023-10-11 | 3.38 | 3.75 | 3.42 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 14.84 | 0.00 | 2.173 | 8.55 | 0.07 | 5.1 | 94.9 | 0.0 | -0.73 | 0.72 | 0.71 | 2.00 | 3.7 | 0.004 | 0.59 | 0.0 | 0.04 | 16.59 | 0.00 | 1.472 | 13.24 | 2.49 | 5.6 | 94.4 | 0.0 | 0.01 | 1.00 | 0.77 | 0.82 | 1.79 | 26301 | 3275 | 14 | 0 | 6 | 0 | 0 | logfile |