Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EWX	50025	2024-07-23	2024-04-05	3.17	2.84	3.08	3.0	0.002	0.42	0.0	0.04	17.57	0.00	2.318	3.78	0.88	0.7	99.3	0.0	2.80	0.68	0.88	2.05	3.0	0.003	0.50	0.0	0.05	16.62	0.00	2.164	6.49	3.39	1.9	98.1	0.0	2.89	0.95	0.67	0.89	1.89	23989	3289	23	0	0	0	0	logfile
✔	9EWQ	50022	2024-07-20	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.83	1.0	0.05	15.11	0.00	2.141	6.08	2.11	3.8	96.2	0.0	-1.07	0.24	0.77	0.88	3.27	11904	1540	4	0	0	0	0	logfile
✔	9B93	44367	2024-07-25	2024-04-01	3.1	3.90	2.99	3.5	0.002	0.46	0.0	0.03	15.66	0.00	2.197	6.34	0.07	2.2	97.8	0.0	1.89	0.73	0.89	2.81	3.4	0.003	0.52	0.0	0.04	15.98	0.00	2.179	7.78	2.17	2.9	97.1	0.0	2.88	0.27	0.71	0.87	2.09	29808	3936	4	0	0	0	0	logfile
✔	8YUU	39583	2024-07-19	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.002	0.54	0.0	0.04	14.19	0.00	2.132	5.74	1.33	1.9	98.1	0.1	2.08	0.57	0.66	0.83	3.40	9037	1145	6	0	2	0	0	logfile
✔	9ERo	19928	2024-07-19	2024-03-24	2.9	3.15	2.93	3.1	0.010	1.67	0.0	0.09	13.22	0.01	2.427	3.65	5.26	5.5	94.5	0.0	-4.12	0.48	0.85	4.87	3.1	0.006	0.85	0.0	0.05	14.93	0.00	2.196	8.57	2.41	4.1	95.9	0.0	-1.72	2.51	0.44	0.83	5.43	5775	750	10	0	0	0	0	logfile
✔	9ERN	19927	2024-07-18	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.004	0.64	0.0	0.05	16.29	0.00	2.111	2.99	0.76	0.9	99.1	0.0	-1.61	0.98	0.43	0.91	5.80	3444	450	6	0	0	0	0	logfile
✔	9ERM	19926	2024-07-18	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.003	0.63	0.0	0.05	16.25	0.00	2.361	3.76	1.82	2.5	97.5	0.0	-1.25	0.99	0.43	0.93	6.49	2870	375	5	0	0	0	0	logfile
✔	8YRP	39547	2024-07-24	2024-03-21	3.64	4.24	3.77	3.9	0.009	1.39	4.0	0.08	15.38	0.01	1.316	13.78	1.44	7.2	92.3	0.5	-2.67	0.73	0.59	0.46	3.9	0.004	0.74	0.0	0.05	16.49	0.00	2.031	21.01	3.76	8.5	91.5	0.0	-1.83	1.38	0.74	0.61	0.38	25462	3266	5	0	0	0	0	logfile
✔	8YRo	39546	2024-07-25	2024-03-21	3.27	3.54	3.32	3.5	0.006	1.01	2.0	0.06	15.19	0.01	1.176	12.50	0.58	5.9	93.7	0.4	-3.94	0.65	0.63	1.54	3.5	0.005	0.73	0.0	0.05	16.48	0.00	2.067	14.67	2.82	7.9	92.1	0.0	-1.86	1.37	0.71	0.74	1.63	27775	3589	9	0	0	0	0	logfile
✔	9B3D	44135	2024-07-23	2024-03-19	3.41	4.16	3.57	3.8	0.005	0.88	0.0	0.05	15.33	0.01	2.099	1.98	0.00	3.7	96.2	0.1	-3.30	0.79	0.76	1.16	3.8	0.004	0.76	0.0	0.04	15.97	0.00	1.805	13.28	1.45	4.3	95.7	0.1	0.59	0.80	0.80	0.81	1.05	23621	2967	14	0	12	0	0	logfile
✔	9B3P	44148	2024-07-20	2024-03-19	3.0	2.71	3.02	3.0	0.002	0.37	0.0	0.03	24.09	0.00	2.292	3.54	0.16	4.6	94.9	0.6	-5.86	0.70	0.70	1.67	3.0	0.003	0.55	0.0	0.03	27.34	0.00	2.186	7.04	1.32	2.5	97.4	0.1	1.88	0.99	0.80	0.85	3.61	11067	738	10	256	0	0	0	logfile
✔	9B35	44128	2024-07-21	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.244	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.003	0.73	0.0	0.04	14.33	0.00	2.130	12.59	1.87	10.8	89.1	0.1	-1.05	0.81	0.67	0.82	2.14	14132	1780	8	0	0	0	0	logfile
✔	9B38	44131	2024-07-23	2024-03-18	3.36	3.64	3.42	3.6	0.008	1.30	0.0	0.08	20.14	0.01	2.270	4.66	0.76	9.0	90.6	0.4	-5.67	0.71	0.77	2.51	3.6	0.004	0.81	0.0	0.05	15.13	0.00	2.153	12.15	1.76	8.3	91.7	0.1	-1.72	3.92	0.77	0.85	2.40	22670	2720	26	0	74	0	0	logfile
✔	9B39	44132	2024-07-25	2024-03-18	3.84	4.26	4.00	4.0	0.009	1.54	0.0	0.07	17.94	0.01	2.184	7.62	0.44	15.3	83.2	1.5	-5.60	0.71	0.80	1.55	4.0	0.003	0.92	0.0	0.05	14.48	0.00	2.094	15.75	1.53	13.2	86.3	0.5	-2.21	1.57	0.72	0.80	1.19	27522	3372	22	0	58	0	0	logfile
✔	9B27	44099	2024-07-23	2024-03-14	3.51	4.14	3.65	3.8	0.004	0.82	0.0	0.05	15.44	0.01	1.519	2.38	0.23	3.7	96.1	0.1	-3.27	0.79	0.79	1.00	3.8	0.005	0.71	0.0	0.04	16.00	0.00	1.848	11.24	1.32	5.5	94.5	0.0	0.70	1.67	0.80	0.81	0.86	23828	2991	14	0	12	0	0	logfile
✔	9EoG	19854	2024-07-18	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.004	0.76	0.0	0.05	15.30	0.00	2.140	9.36	1.49	5.3	94.7	0.0	-1.63	1.09	0.36	0.88	3.18	3522	462	6	0	0	0	0	logfile
✔	9EoH	19855	2024-07-18	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.004	0.82	0.0	0.05	17.08	0.00	2.339	8.04	2.05	3.5	96.5	0.0	-2.62	1.19	0.42	0.88	5.54	3414	444	6	0	0	0	0	logfile
✔	9B0K	44045	2024-07-23	2024-03-12	3.03	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.003	0.63	0.0	0.04	14.66	0.00	1.984	8.82	1.13	3.8	96.2	0.0	1.32	0.44	0.84	0.84	1.68	23896	3020	14	0	12	0	0	logfile
✔	9EMC	19817	2024-07-21	2024-03-11	3.26	3.86	3.07	3.6	0.011	1.34	0.0	0.08	18.59	0.01	2.075	5.04	1.44	2.5	97.5	0.0	-3.73	0.75	0.68	0.35	3.6	0.004	0.57	0.0	0.04	17.62	0.00	1.855	8.43	1.87	2.7	97.3	0.0	1.61	1.16	0.82	0.90	1.98	15489	1977	12	0	12	0	0	logfile
✔	9B03	44026	2024-07-23	2024-03-11	2.95	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.005	0.74	0.0	0.04	14.90	0.00	1.930	11.15	1.44	4.2	95.8	0.0	0.78	0.47	0.84	0.84	1.80	23896	3020	14	0	12	0	0	logfile

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