Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W2T	43758	2025-07-25	2024-02-21	2.52	2.70	2.58	2.7	0.011	0.63	0.0	0.04	16.00	0.00	2.118	1.70	0.65	0.4	99.6	0.0	0.04	0.58	0.78	4.39	2.7	0.004	0.56	0.0	0.04	17.17	0.00	2.491	3.73	3.03	1.4	98.6	0.0	0.27	0.57	0.62	0.83	4.57	4488	568	4	0	2	0	0	logfile
✔	8W28	43741	2025-07-25	2024-02-20	2.19	2.40	2.22	2.4	0.002	0.49	0.0	0.04	16.52	0.00	1.920	2.03	0.00	1.2	98.8	0.0	0.20	0.64	0.75	4.34	2.4	0.005	0.67	0.0	0.05	16.85	0.00	2.334	3.94	1.09	1.1	98.9	0.0	-0.22	0.98	0.61	0.79	4.61	4564	568	6	0	4	40	0	logfile
✔	8S2T	19683	2025-07-25	2024-02-19	3.3	3.47	3.30	3.7	0.025	1.81	1.0	0.10	10.26	0.01	2.334	1.20	0.00	2.5	97.5	0.0	0.52	0.71	0.79	3.18	3.7	0.003	0.70	0.0	0.05	15.10	0.00	2.424	11.50	3.86	3.4	96.6	0.0	0.69	1.44	0.66	0.77	2.31	7955	1002	6	0	1	0	0	logfile
✔	8W22	43737	2025-07-23	2024-02-19	4.0	4.25	3.94	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.1	0.004	0.70	0.0	0.05	12.29	0.00	2.606	3.36	4.44	4.7	95.3	0.0	0.07	0.75	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8YC0	39128	2025-07-23	2024-02-17	4.12	4.24	3.85	4.2	0.004	0.78	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.004	0.79	0.0	0.04	13.90	0.00	2.461	10.64	0.00	6.5	93.5	0.0	-0.82	1.34	0.61	0.72	—	4635	583	9	0	1	0	0	logfile
✔	8YBQ	39121	2025-07-29	2024-02-16	2.59	2.96	2.71	2.9	0.005	0.78	0.0	0.05	12.29	0.00	2.153	2.18	0.67	2.6	97.4	0.0	-2.76	0.67	0.87	2.97	2.9	0.003	0.55	0.0	0.04	14.14	0.00	2.631	1.80	1.68	2.0	98.0	0.0	1.52	0.92	0.62	0.85	2.42	11700	1506	9	0	3	66	0	logfile
✔	8YBK	39120	2025-07-28	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.005	0.59	0.0	0.04	27.84	0.00	2.533	4.63	1.72	2.0	98.0	0.0	2.71	1.11	0.78	0.83	2.81	10261	708	10	228	0	0	0	logfile
✔	8W0R	43712	2025-07-24	2024-02-14	2.8	2.89	2.82	2.9	0.005	0.71	0.0	0.11	12.17	0.01	2.073	0.57	0.00	2.4	97.6	0.0	0.55	0.61	0.77	3.21	2.9	0.003	0.49	0.0	0.04	14.48	0.00	2.657	5.71	1.34	1.4	98.6	0.0	2.36	1.74	0.59	0.78	3.18	3556	426	4	0	2	0	0	logfile
✔	8YBJ	39119	2025-07-29	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.57	0.0	0.03	28.29	0.00	2.579	3.51	1.75	0.7	99.3	0.0	2.82	0.26	0.76	0.84	3.84	11953	758	10	290	0	0	0	logfile
✔	8YBE	39117	2025-07-23	2024-02-13	2.3	2.50	2.33	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.005	0.70	0.0	0.04	16.72	0.00	2.597	11.19	1.67	2.2	97.8	0.0	1.27	0.33	0.68	0.83	5.63	3110	370	3	0	2	197	0	logfile
✔	8W0A	43706	2025-07-28	2024-02-13	3.2	3.72	3.22	3.6	0.003	0.59	0.0	0.04	19.61	0.00	1.561	10.62	0.09	8.1	91.9	0.0	-1.76	0.72	0.71	1.67	3.6	0.002	0.57	0.0	0.04	19.64	0.00	2.583	8.71	4.35	7.1	92.9	0.0	-1.22	0.45	0.70	0.72	0.57	10216	1272	4	14	0	0	0	logfile
✔	8RZL	19608	2025-07-26	2024-02-12	2.65	3.69	2.74	3.2	0.012	1.71	0.0	0.10	15.37	0.01	2.347	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.73	0.0	0.04	11.37	0.00	2.494	3.57	1.79	2.7	97.3	0.0	1.17	0.48	0.87	0.90	5.13	8895	915	35	0	155	0	0	logfile
✔	8VZo	43684	2025-07-24	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.003	0.58	0.0	0.04	15.19	0.00	2.609	4.69	2.12	2.0	98.0	0.0	2.24	0.51	0.67	0.88	3.83	4796	615	4	0	1	0	0	logfile
✔	8VZN	43683	2025-07-23	2024-02-12	2.77	2.94	2.78	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.003	0.59	0.0	0.04	15.27	0.00	2.619	4.82	1.20	2.2	97.8	0.0	1.74	0.97	0.61	0.87	3.24	4656	596	4	0	1	0	0	logfile
✔	8RZ9	19607	2025-07-26	2024-02-12	3.02	2.39	3.08	3.0	0.015	1.26	4.0	0.10	17.55	0.01	1.685	25.25	3.61	6.0	94.0	0.0	-1.70	0.76	0.76	0.82	2.1	0.005	1.07	1.0	0.05	18.22	0.00	1.835	19.07	5.84	5.2	94.8	0.0	-0.41	1.38	0.75	0.73	1.10	8571	1067	4	0	4	0	0	logfile
✔	8RZ7	19605	2025-07-31	2024-02-12	3.37	2.54	3.43	2.9	0.012	1.45	11.0	0.10	19.24	0.01	1.674	19.28	3.61	5.7	94.3	0.0	-1.14	0.78	0.80	1.07	2.2	0.004	0.75	0.0	0.04	19.90	0.00	1.911	14.14	4.67	4.3	95.7	0.0	0.16	1.41	0.74	0.74	1.10	13544	1593	6	38	4	0	0	logfile
✔	8RZ8	19606	2025-07-27	2024-02-12	3.06	2.38	3.08	3.0	0.007	1.19	0.0	0.08	16.61	0.00	1.729	17.03	2.74	6.1	93.9	0.0	-1.06	0.77	0.77	1.63	2.0	0.004	0.65	0.0	0.04	17.70	0.00	1.810	12.85	3.23	4.1	95.9	0.0	-0.09	0.52	0.75	0.74	1.58	9255	1160	4	0	4	0	0	logfile
✔	8YB4	39108	2025-07-26	2024-02-11	3.1	3.56	3.21	3.4	0.004	0.62	0.0	0.04	18.65	0.02	2.205	7.05	0.33	4.6	95.4	0.0	0.26	0.68	0.74	1.67	3.4	0.003	0.57	0.0	0.04	18.28	0.00	2.450	4.42	3.31	3.9	96.0	0.1	1.17	0.91	0.69	0.83	1.67	8400	1067	5	0	2	0	0	logfile
✔	8VZ6	43682	2025-07-25	2024-02-10	3.56	3.26	3.44	3.3	0.006	1.16	0.0	0.06	21.09	0.01	2.255	1.47	0.37	1.0	99.0	0.0	-1.51	0.64	0.77	2.37	3.3	0.003	0.59	0.0	0.04	21.51	0.01	2.535	5.72	1.69	2.5	97.5	0.0	0.82	1.10	0.65	0.78	0.94	6954	594	4	98	0	0	0	logfile
✔	8YAS	39106	2025-07-28	2024-02-10	3.97	4.32	4.03	4.2	0.020	1.11	0.0	0.07	16.48	0.01	1.919	8.42	0.66	5.4	94.6	0.0	-3.32	0.62	0.70	0.48	4.2	0.004	0.85	0.0	0.05	17.88	0.00	1.289	12.58	3.11	4.5	95.5	0.0	1.07	2.25	0.68	0.81	1.05	9894	1243	4	0	3	0	0	logfile

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