Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VYo	43673	2025-07-30	2024-02-09	3.74	3.99	3.82	3.8	0.005	0.73	0.0	0.04	13.90	0.01	2.100	3.23	0.31	5.4	94.6	0.0	-2.00	0.71	0.73	1.45	3.8	0.004	0.62	0.0	0.03	17.01	0.00	2.266	7.54	1.37	5.1	94.9	0.0	0.48	1.04	0.73	0.77	0.62	12075	750	4	0	2	0	6039	logfile
✔	8VYK	43663	2025-07-29	2024-02-08	3.9	4.50	3.94	4.4	0.004	0.97	0.0	0.05	20.13	0.02	2.031	10.60	0.57	7.2	92.8	0.0	-0.83	0.67	0.63	0.91	4.4	0.004	0.97	0.0	0.05	16.91	0.01	2.428	11.02	2.19	7.4	92.5	0.1	-1.05	1.25	0.66	0.72	0.95	11721	1395	6	0	23	0	0	logfile
✔	8VYJ	43662	2025-07-30	2024-02-08	3.6	4.25	3.54	4.2	0.003	0.62	0.0	0.04	20.76	0.00	2.169	8.41	0.16	7.4	92.6	0.0	-0.46	0.67	0.70	1.52	4.2	0.004	0.82	0.0	0.04	17.62	0.00	2.329	9.68	3.66	8.1	91.9	0.0	-0.84	0.79	0.66	0.75	1.67	11715	1395	6	0	23	0	0	logfile
✔	8YAA	39093	2025-07-25	2024-02-08	3.34	3.03	3.28	3.1	0.006	1.01	0.0	0.06	21.92	0.01	2.131	9.29	0.13	11.0	89.0	0.0	-4.08	0.78	0.85	3.54	3.2	0.003	0.76	0.0	0.05	15.72	0.00	2.451	5.40	1.59	6.7	93.2	0.1	-4.02	0.93	0.78	0.86	2.76	6985	844	17	0	36	0	0	logfile
✔	8VYG	43660	2025-07-23	2024-02-08	3.1	3.18	3.21	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.003	0.65	0.0	0.04	15.77	0.00	2.558	5.45	2.39	3.4	96.6	0.0	0.22	1.46	0.54	0.78	2.54	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2025-07-24	2024-02-08	3.2	3.37	3.21	3.4	0.011	1.29	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.003	0.60	0.0	0.04	12.21	0.00	2.566	2.22	1.65	2.7	97.3	0.0	0.91	0.52	0.66	0.87	5.27	5132	715	9	0	12	0	0	logfile
✔	8YA3	39090	2025-07-23	2024-02-07	3.27	3.53	3.30	3.3	0.009	0.93	0.0	0.06	15.75	0.01	2.266	7.80	0.23	7.1	92.9	0.0	-2.67	0.61	0.83	1.74	3.3	0.003	0.63	0.0	0.04	15.75	0.00	2.638	6.72	2.72	4.4	95.6	0.0	2.64	1.20	0.61	0.84	1.91	4060	519	3	0	0	0	0	logfile
✔	8VY9	43650	2025-07-26	2024-02-07	2.88	2.27	2.91	2.0	0.005	0.70	0.0	0.05	14.27	0.00	2.245	3.56	0.00	4.2	95.8	0.0	-0.69	0.78	0.80	3.74	2.1	0.005	0.64	0.0	0.04	16.43	0.00	2.394	6.31	2.32	5.0	95.0	0.0	0.88	0.48	0.79	0.82	3.31	8668	1134	6	0	2	0	0	logfile
✔	8RXK	19577	2025-07-30	2024-02-07	3.23	4.03	3.38	3.6	0.005	0.77	0.0	0.04	19.42	0.00	2.093	9.71	0.25	7.1	92.2	0.7	-0.95	0.72	0.83	2.64	3.6	0.003	0.73	0.0	0.04	19.71	0.00	2.513	7.14	1.81	6.4	93.3	0.3	0.13	0.85	0.71	0.84	2.29	12162	1446	7	48	3	0	0	logfile
✔	8VY7	43647	2025-07-26	2024-02-07	2.68	2.20	2.71	2.0	0.005	0.71	0.0	0.05	14.10	0.00	2.245	3.71	0.00	3.5	96.5	0.0	-0.25	0.80	0.82	3.65	2.0	0.003	0.59	0.0	0.04	15.76	0.00	2.498	6.40	1.49	3.4	96.6	0.0	1.29	1.30	0.80	0.82	3.28	8811	1136	6	0	2	0	0	logfile
✔	8Y9Y	39085	2025-07-28	2024-02-07	3.29	3.20	3.22	3.3	0.017	1.13	1.0	0.07	16.62	0.01	1.632	7.09	0.73	6.5	93.5	0.0	-3.25	0.77	0.83	2.48	3.2	0.003	0.63	0.0	0.04	17.52	0.00	1.185	6.07	3.00	4.0	96.0	0.0	1.36	1.20	0.72	0.82	2.26	10207	1284	5	0	3	0	0	logfile
✔	8Y9M	39083	2025-07-27	2024-02-07	2.76	3.35	3.05	3.3	0.005	0.75	0.0	0.04	19.55	0.00	2.167	8.28	0.40	4.0	96.0	0.0	-1.32	0.67	0.79	3.40	3.3	0.004	0.63	0.0	0.04	20.65	0.00	2.456	6.49	3.51	4.1	95.9	0.0	-0.29	1.26	0.59	0.75	2.81	9138	853	4	107	0	0	0	logfile
✔	8Y9N	39084	2025-07-26	2024-02-07	3.0	3.12	3.20	3.0	0.012	1.17	11.0	0.08	20.09	0.01	2.214	6.24	3.11	2.6	97.4	0.0	0.40	0.82	0.87	3.58	3.0	0.004	0.57	0.0	0.04	20.05	0.00	2.204	2.77	1.49	2.4	97.6	0.0	1.08	0.36	0.85	0.92	3.58	8961	851	5	99	1	0	0	logfile
✔	8Y9L	39082	2025-07-25	2024-02-07	3.0	3.22	2.95	3.2	0.006	0.90	3.0	0.07	17.89	0.01	1.953	10.21	1.52	3.8	96.1	0.1	-0.24	0.66	0.78	3.49	3.2	0.003	0.58	0.0	0.04	18.80	0.00	2.065	5.65	0.61	3.1	96.9	0.0	0.39	0.98	0.63	0.79	2.71	7008	757	3	41	1	0	0	logfile
✔	8Y9Z	39086	2025-07-29	2024-02-07	3.41	3.63	3.40	3.6	0.006	0.67	0.0	0.05	12.84	0.01	2.003	3.01	1.69	5.1	94.9	0.0	-1.93	0.68	0.82	2.13	3.6	0.004	0.62	0.0	0.04	15.10	0.00	1.796	4.76	2.28	5.5	94.5	0.0	0.75	2.48	0.67	0.82	1.88	11061	1388	6	0	3	0	0	logfile
✔	8VYB	43655	2025-07-25	2024-02-07	3.37	3.91	3.30	3.7	0.008	1.05	0.0	0.07	15.54	0.01	2.344	0.00	0.00	5.4	94.6	0.0	-1.28	0.70	0.63	1.89	3.7	0.003	0.67	0.0	0.04	16.94	0.00	2.489	6.71	2.00	3.9	96.1	0.0	0.13	1.21	0.79	0.80	1.92	7249	920	2	0	0	0	0	logfile
✔	8Y94	39069	2025-07-26	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.69	0.0	0.04	15.22	0.00	2.536	10.76	3.47	2.9	97.1	0.0	0.85	1.15	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8VY2	43644	2025-07-28	2024-02-06	4.3	4.36	4.28	4.3	0.010	1.03	4.0	0.06	13.16	0.02	2.212	13.22	0.97	7.6	91.9	0.5	-0.91	0.65	0.53	—	4.3	0.005	0.85	0.0	0.05	13.00	0.00	2.387	10.18	0.00	7.1	92.9	0.0	-1.29	1.59	0.78	0.74	—	10374	1319	6	0	15	0	0	logfile
✔	8Y93	39068	2025-07-27	2024-02-06	3.0	3.45	3.17	3.4	0.003	0.60	0.0	0.04	11.79	0.00	2.127	7.36	5.15	2.2	97.8	0.0	-1.85	0.51	0.68	2.29	3.4	0.003	0.70	0.0	0.04	15.71	0.00	2.263	8.35	3.05	3.6	96.4	0.0	1.05	0.80	0.61	0.83	2.00	9055	1130	3	0	3	0	0	logfile
✔	8Y95	39070	2025-07-27	2024-02-06	3.24	3.62	3.40	3.6	0.014	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.004	0.64	0.0	0.04	14.95	0.00	2.320	10.56	3.69	3.5	96.5	0.0	0.66	1.11	0.57	0.79	2.56	9018	1124	4	0	6	0	0	logfile

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