Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Y6A	38983	2025-07-27	2024-02-02	2.72	3.72	2.80	3.2	0.004	0.81	0.0	0.06	15.69	0.01	2.212	14.67	0.48	6.5	93.0	0.5	-1.89	0.79	0.64	1.10	3.3	0.004	0.93	0.0	0.05	15.97	0.01	2.077	16.79	2.19	7.9	92.0	0.1	-1.38	0.95	0.81	0.66	1.41	9786	1206	10	0	16	0	0	logfile
✔	8Y6M	38991	2025-07-24	2024-02-02	2.91	3.15	2.94	3.2	0.006	0.70	0.0	0.05	18.43	0.01	2.065	13.26	7.32	3.3	96.7	0.0	0.60	0.50	0.70	2.60	3.2	0.003	0.62	0.0	0.04	18.17	0.00	2.593	12.29	3.45	3.1	96.9	0.0	1.45	1.07	0.51	0.70	1.93	6502	826	2	0	0	0	0	logfile
✔	8Y6L	38990	2025-07-24	2024-02-02	3.4	3.59	3.33	3.6	0.006	1.02	8.0	0.06	17.31	0.01	1.397	18.84	3.53	10.0	88.5	1.5	-1.61	0.58	0.74	2.10	3.6	0.003	0.80	0.0	0.04	17.94	0.00	2.397	13.03	5.15	8.1	91.6	0.2	-0.19	1.17	0.56	0.73	1.39	6256	818	2	0	0	0	0	logfile
✔	8RW5	19543	2025-07-24	2024-02-02	2.94	3.11	2.94	3.1	0.003	0.54	0.0	0.04	15.69	0.00	2.179	5.79	0.29	2.5	97.5	0.0	0.66	0.67	0.85	3.33	3.1	0.005	0.62	0.0	0.04	16.52	0.01	2.544	5.79	2.05	2.9	97.1	0.0	0.71	0.68	0.68	0.86	3.14	6753	872	1	0	0	0	0	logfile
✔	8VWY	43605	2025-07-24	2024-02-02	2.78	2.94	2.85	3.1	0.006	0.58	0.0	0.04	12.58	0.00	2.133	11.76	6.10	5.2	94.8	0.0	-1.38	0.63	0.78	3.81	3.1	0.003	0.59	0.0	0.04	15.75	0.00	2.321	9.85	2.97	5.2	94.8	0.0	-0.82	0.83	0.62	0.80	2.62	6293	825	13	0	7	8	0	logfile
✔	8Y6J	38988	2025-07-24	2024-02-02	3.46	3.69	3.46	3.7	0.003	0.55	0.0	0.04	16.14	0.00	2.181	6.75	0.00	3.3	96.7	0.0	3.00	0.58	0.79	1.79	3.7	0.003	0.51	0.0	0.04	16.85	0.00	2.577	6.38	3.07	3.9	96.1	0.0	3.49	0.24	0.57	0.79	1.49	6650	850	2	0	0	0	0	logfile
✔	8RVN	19525	2025-07-30	2024-02-01	3.5	3.62	3.48	3.5	0.004	0.80	0.0	0.05	13.59	0.02	1.949	4.85	0.30	3.8	96.2	0.0	-0.44	0.78	0.85	2.25	3.5	0.003	0.58	0.0	0.04	15.05	0.00	2.441	3.26	2.01	4.0	96.0	0.0	-0.14	1.16	0.78	0.85	1.94	11924	1540	8	0	12	0	0	logfile
✔	8Y5X	38955	2025-07-25	2024-02-01	3.25	3.48	3.25	3.5	0.003	0.64	0.0	0.04	12.54	0.01	2.201	8.63	0.00	3.4	96.4	0.2	1.40	0.64	0.83	2.94	3.4	0.004	0.64	0.0	0.04	14.12	0.01	2.199	9.42	1.70	3.9	96.1	0.0	1.98	0.38	0.66	0.86	2.35	8032	1024	4	0	4	0	0	logfile
✔	8Y62	38964	2025-07-25	2024-02-01	3.2	2.90	3.23	3.3	0.006	0.73	0.0	0.05	13.81	0.00	2.202	9.41	0.13	5.0	95.0	0.0	-1.49	0.79	0.84	3.17	3.4	0.003	0.68	0.0	0.04	15.22	0.00	2.538	7.05	2.74	3.2	96.8	0.0	0.08	0.38	0.80	0.85	2.32	8160	1128	6	0	1	0	0	logfile
✔	8Y5W	38954	2025-07-25	2024-02-01	2.73	2.95	2.75	3.0	0.003	0.64	0.0	0.04	11.21	0.00	2.168	6.39	0.00	4.8	95.2	0.0	0.63	0.71	0.87	3.73	3.0	0.003	0.61	0.0	0.04	13.92	0.00	2.223	7.37	1.60	4.7	95.2	0.1	1.46	0.90	0.66	0.88	3.40	8015	1023	4	0	6	0	0	logfile
✔	8Y5Y	38959	2025-07-25	2024-02-01	3.3	3.56	3.32	3.6	0.004	0.68	0.0	0.05	13.07	0.01	2.298	9.39	0.46	4.2	95.2	0.6	-0.04	0.65	0.81	3.00	3.6	0.003	0.77	0.0	0.05	15.24	0.01	2.581	10.82	3.24	4.3	95.3	0.4	0.40	0.52	0.64	0.83	1.76	7918	1012	4	0	2	0	0	logfile
✔	8Y5Z	38960	2025-07-25	2024-02-01	3.35	3.68	3.40	3.7	0.003	0.61	0.0	0.04	13.09	0.01	2.201	8.65	0.00	4.7	95.3	0.0	1.63	0.65	0.84	2.63	3.7	0.003	0.57	0.0	0.04	15.44	0.01	2.275	6.47	1.62	5.2	94.8	0.0	1.80	0.92	0.65	0.86	1.94	7918	1016	4	0	4	0	0	logfile
✔	8Y5U	38953	2025-07-25	2024-02-01	3.04	3.34	3.12	3.4	0.004	0.62	0.0	0.04	13.06	0.01	2.215	8.29	0.12	3.7	96.2	0.1	1.88	0.68	0.85	2.62	3.4	0.003	0.58	0.0	0.04	15.03	0.01	2.344	7.67	1.61	3.3	96.6	0.1	2.16	0.37	0.61	0.86	2.65	7961	1016	4	0	5	0	0	logfile
✔	8Y66	38968	2025-07-23	2024-02-01	3.28	3.92	3.36	3.9	0.006	0.76	0.0	0.05	14.11	0.01	2.223	10.92	0.26	3.4	96.6	0.0	1.27	0.45	0.67	1.39	3.9	0.003	0.61	0.0	0.04	16.23	0.00	2.507	7.65	3.65	2.4	97.6	0.0	1.89	0.34	0.47	0.69	1.09	3606	467	2	0	1	0	0	logfile
✔	8Y65	38966	2025-07-23	2024-02-01	3.51	3.77	3.40	3.8	0.004	0.73	0.0	0.04	13.65	0.01	2.231	9.02	0.27	3.7	96.3	0.0	1.81	0.43	0.55	0.74	3.8	0.003	0.63	0.0	0.04	15.22	0.00	2.596	10.27	1.33	3.7	96.3	0.0	1.71	0.36	0.45	0.57	0.74	3565	467	2	0	1	0	0	logfile
✔	8Y5F	38933	2025-07-27	2024-01-31	3.13	2.36	3.22	2.2	0.003	0.66	1.0	0.05	17.96	0.01	2.255	6.71	1.84	4.3	95.5	0.2	0.71	0.78	0.79	2.17	2.1	0.003	0.61	0.0	0.04	17.80	0.01	2.590	4.51	3.13	4.2	95.7	0.1	0.79	1.15	0.78	0.81	1.79	9846	1240	4	0	0	0	0	logfile
✔	8VVi	43560	2025-07-25	2024-01-31	2.8	3.04	2.78	3.1	0.002	0.44	0.0	0.04	13.85	0.00	2.197	7.21	0.00	3.9	96.1	0.0	-0.11	0.63	0.80	3.25	3.1	0.004	0.59	0.0	0.04	16.80	0.00	2.426	7.91	2.12	4.2	95.8	0.0	1.11	1.69	0.67	0.84	3.04	7762	968	7	0	0	0	0	logfile
✔	8VVZ	43573	2025-07-26	2024-01-31	3.41	3.62	3.43	3.6	0.001	0.37	0.0	0.03	14.14	0.00	2.257	6.73	0.00	2.2	97.8	0.0	2.19	0.53	0.80	1.35	3.6	0.003	0.52	0.0	0.04	16.60	0.00	2.465	6.12	1.32	2.5	97.5	0.0	2.51	3.07	0.59	0.86	1.63	8856	1104	6	0	0	0	0	logfile
✔	8VW3	43575	2025-07-26	2024-01-31	3.47	3.56	3.37	3.5	0.002	0.38	0.0	0.03	12.88	0.00	2.141	5.39	0.00	2.0	98.0	0.0	2.82	0.56	0.84	1.74	3.5	0.003	0.54	0.0	0.04	15.56	0.00	2.487	7.90	1.52	3.1	96.9	0.0	2.50	1.63	0.59	0.87	1.85	8856	1104	6	0	0	0	0	logfile
✔	8VVN	43563	2025-07-30	2024-01-31	2.2	2.40	—	2.4	0.004	0.60	0.0	0.04	13.90	0.00	2.098	10.00	0.00	3.1	96.9	0.1	0.25	0.66	0.82	3.74	2.4	0.003	0.53	0.0	0.04	16.41	0.00	2.224	5.99	0.72	2.6	97.4	0.1	1.66	0.33	0.66	0.84	3.05	12935	1610	16	0	2	140	0	logfile

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