Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VVN	43563	2025-07-30	2024-01-31	2.2	2.40	—	2.4	0.004	0.60	0.0	0.04	13.90	0.00	2.098	10.00	0.00	3.1	96.9	0.1	0.25	0.66	0.82	3.74	2.4	0.003	0.53	0.0	0.04	16.41	0.00	2.224	5.99	0.72	2.6	97.4	0.1	1.66	0.33	0.66	0.84	3.05	12935	1610	16	0	2	140	0	logfile
✔	8VVH	43559	2025-07-26	2024-01-31	3.95	4.19	3.93	4.1	0.002	0.61	0.0	0.04	17.03	0.00	2.220	9.03	0.88	7.1	92.7	0.2	-1.64	0.68	0.80	1.58	4.1	0.003	0.66	0.0	0.04	16.93	0.00	2.525	6.93	6.17	7.1	92.8	0.1	-1.43	0.30	0.69	0.79	2.01	6877	941	4	0	0	0	0	logfile
✔	8Y52	38928	2025-07-25	2024-01-31	2.9	4.04	2.89	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.009	1.05	1.0	0.05	12.81	0.01	1.720	32.51	2.73	2.0	98.0	0.0	-1.00	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✔	8VVW	43571	2025-07-25	2024-01-31	3.29	3.42	3.24	3.4	0.003	0.42	0.0	0.03	13.09	0.00	2.296	5.47	0.00	2.3	97.7	0.0	2.54	0.59	0.86	1.97	3.4	0.003	0.52	0.0	0.04	16.18	0.00	2.306	7.41	2.07	2.5	97.5	0.0	2.83	1.48	0.58	0.87	2.21	7380	920	5	0	0	0	0	logfile
✔	8VVF	43557	2025-07-26	2024-01-31	3.0	2.62	—	3.1	0.003	0.67	0.0	0.05	12.63	0.00	2.229	5.99	0.00	4.7	95.3	0.0	-1.37	0.77	0.75	1.34	3.1	0.005	0.72	0.0	0.04	15.73	0.00	2.323	12.39	3.33	5.3	94.7	0.0	-0.26	0.56	0.79	0.78	1.80	8581	1135	6	0	1	0	0	logfile
✔	8Y56	38930	2025-07-24	2024-01-31	2.83	3.24	2.97	3.1	0.006	0.73	2.0	0.04	15.56	0.00	2.279	12.30	0.98	3.1	96.9	0.0	0.73	0.59	0.76	3.30	3.2	0.003	0.62	0.0	0.04	15.48	0.00	2.412	9.45	1.37	3.8	96.2	0.0	2.46	1.91	0.54	0.75	3.37	4796	586	2	0	7	5	0	logfile
✔	8Y51	38927	2025-07-26	2024-01-31	3.3	4.02	3.23	3.7	0.002	0.43	0.0	0.04	8.23	0.00	2.053	5.64	0.21	0.8	99.1	0.1	-0.93	0.69	0.74	1.74	3.6	0.003	0.77	0.0	0.04	14.32	0.00	2.475	9.25	2.77	2.3	97.7	0.0	1.23	1.80	0.70	0.83	1.91	8883	1130	5	0	0	0	0	logfile
✔	8Y48	38910	2025-07-30	2024-01-30	3.26	4.13	3.17	3.6	0.003	0.51	0.0	0.04	15.02	0.00	2.298	6.70	0.00	5.6	94.4	0.0	-0.61	0.89	0.89	2.07	3.6	0.007	0.62	0.0	0.04	15.53	0.00	2.561	4.64	3.96	7.5	92.4	0.2	-0.93	0.92	0.89	0.87	2.34	12051	1674	3	0	0	0	0	logfile
✔	8VUZ	43545	2025-07-24	2024-01-30	3.95	4.14	3.94	4.1	0.012	0.81	0.0	0.04	17.38	0.01	2.050	13.66	0.13	6.8	93.1	0.1	-0.21	0.74	0.85	2.04	4.1	0.003	0.74	0.0	0.04	17.59	0.00	2.494	10.23	4.48	5.6	94.4	0.0	0.21	0.96	0.75	0.84	1.45	6626	869	4	0	0	0	0	logfile
✔	8VVC	43550	2025-07-30	2024-01-30	4.32	4.77	4.36	4.4	0.003	0.75	0.0	0.05	14.07	0.00	2.196	13.22	0.25	7.7	92.2	0.1	-0.65	0.60	0.80	—	4.4	0.003	0.73	0.0	0.04	14.16	0.00	2.345	10.83	0.00	6.6	93.4	0.1	0.00	0.48	0.60	0.81	—	10989	1390	1	0	0	0	0	logfile
✔	8VV3	43548	2025-07-30	2024-01-30	2.61	2.94	2.67	2.9	0.004	0.52	0.0	0.04	14.37	0.00	2.233	8.42	0.00	4.2	95.8	0.0	2.23	0.61	0.75	1.70	2.9	0.003	0.61	0.0	0.04	16.81	0.00	2.477	10.55	3.48	4.5	95.5	0.0	2.62	1.58	0.61	0.77	2.36	12172	1548	8	0	4	0	0	logfile
✔	8VUW	43542	2025-07-30	2024-01-29	3.19	2.92	3.06	3.0	0.007	0.98	0.0	0.06	17.62	0.00	2.280	7.02	0.36	4.5	95.5	0.0	-1.89	0.66	0.80	4.06	3.0	0.003	0.56	0.0	0.04	16.54	0.00	2.590	7.40	0.93	3.4	96.6	0.0	-0.63	0.35	0.65	0.82	3.08	13055	1560	10	0	5	0	0	logfile
✔	8RU0	19501	2025-07-29	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.007	0.70	0.0	0.05	16.54	0.00	1.941	5.62	3.30	4.6	95.3	0.1	-0.26	1.31	0.64	0.84	2.31	11660	1476	8	0	11	0	0	logfile
✔	8Y3T	38898	2025-07-23	2024-01-29	2.61	2.83	2.38	2.8	0.008	0.72	0.0	0.05	12.61	0.00	2.231	9.51	0.00	3.5	96.5	0.0	0.24	0.44	0.80	4.67	2.8	0.003	0.58	0.0	0.04	16.38	0.00	2.666	6.99	2.06	0.0	100.0	0.0	1.17	1.05	0.45	0.82	3.53	1790	238	2	0	0	0	0	logfile
✔	8VUL	43532	2025-07-25	2024-01-29	3.83	4.04	6.72	4.0	0.004	0.68	0.0	0.04	16.80	0.01	2.218	7.73	0.27	8.8	90.9	0.3	-1.67	0.75	0.82	1.77	4.0	0.003	0.66	0.0	0.04	17.22	0.00	2.427	5.66	4.37	9.4	90.3	0.3	-1.39	0.29	0.74	0.82	1.89	7158	963	4	0	0	0	0	logfile
✔	8VUV	43541	2025-07-26	2024-01-29	3.69	3.94	3.73	3.9	0.003	0.63	0.0	0.04	17.33	0.00	2.159	8.86	0.11	7.7	92.1	0.2	-1.24	0.68	0.74	1.50	3.9	0.004	0.66	0.0	0.05	17.67	0.00	2.545	6.95	5.88	7.9	92.0	0.2	-1.31	0.34	0.69	0.75	1.53	8586	1154	4	0	0	0	0	logfile
✔	8Y3N	38892	2025-07-23	2024-01-29	3.8	4.11	3.76	4.1	0.007	0.82	0.0	0.05	13.36	0.01	2.382	11.92	0.00	11.9	88.1	0.0	-3.00	0.45	0.80	3.56	4.1	0.003	0.63	0.0	0.04	15.51	0.01	2.604	8.67	1.72	5.4	94.6	0.0	-1.26	1.04	0.42	0.78	3.56	3694	494	4	0	0	0	0	logfile
✔	8VUQ	43536	2025-07-26	2024-01-29	3.85	4.17	3.92	4.1	0.003	0.62	0.0	0.04	17.33	0.01	2.133	8.08	0.66	12.1	87.5	0.4	-1.68	0.71	0.83	1.47	4.1	0.006	0.73	0.0	0.05	17.50	0.00	2.139	8.31	5.73	13.2	86.3	0.5	-1.71	0.91	0.71	0.83	1.28	8657	1161	4	0	0	0	0	logfile
✔	8Y3V	38900	2025-07-23	2024-01-29	3.46	3.65	2.21	3.6	0.006	0.73	0.0	0.05	12.74	0.01	2.342	6.61	0.00	11.1	88.9	0.0	-2.06	0.48	0.85	4.09	3.7	0.004	0.66	0.0	0.05	15.13	0.00	2.599	4.76	1.46	8.1	91.9	0.0	-0.57	0.27	0.46	0.84	3.33	3785	513	4	0	0	0	0	logfile
✔	8Y3U	38899	2025-07-29	2024-01-29	2.98	3.75	2.99	3.4	0.004	0.74	0.0	0.05	18.33	0.01	2.130	6.39	4.19	5.5	94.1	0.4	-1.73	0.76	0.72	2.35	3.5	0.003	0.75	0.0	0.04	17.10	0.01	2.389	7.25	4.19	5.3	94.7	0.1	-1.38	3.40	0.78	0.76	2.49	11273	1447	15	0	15	0	0	logfile

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