Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VJC	43280	2024-08-06	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.005	0.68	0.0	0.05	16.21	0.00	2.429	11.55	2.75	8.5	91.3	0.2	-1.58	0.36	0.85	0.82	1.85	13927	1726	5	0	0	0	0	logfile
✔	8XQS	38587	2024-08-03	2024-01-05	3.3	2.38	3.33	2.1	0.004	0.60	0.0	0.04	15.23	0.01	2.078	14.68	0.31	3.6	96.4	0.0	0.32	0.75	0.75	2.02	2.1	0.004	0.64	0.0	0.04	15.81	0.00	2.507	12.03	4.43	3.2	96.8	0.0	0.34	0.35	0.74	0.75	1.91	8867	1122	6	0	2	0	0	logfile
✔	8XQL	38580	2024-08-03	2024-01-05	2.99	2.28	3.05	2.0	0.005	0.63	0.0	0.04	15.56	0.00	2.156	14.24	0.00	4.2	95.7	0.1	0.98	0.78	0.78	2.64	2.0	0.004	0.65	0.0	0.04	16.40	0.00	2.499	9.75	2.87	3.9	96.0	0.2	1.11	1.08	0.77	0.79	2.44	8368	1052	6	0	3	0	0	logfile
✔	8XQT	38588	2024-08-03	2024-01-05	2.94	2.26	3.07	2.0	0.003	0.59	0.0	0.04	15.34	0.00	2.168	16.18	0.21	3.1	96.9	0.0	0.33	0.74	0.74	2.16	2.0	0.004	0.64	0.0	0.04	16.13	0.00	2.511	10.95	3.08	2.8	97.2	0.0	0.25	1.52	0.76	0.76	2.12	8897	1125	6	0	2	0	0	logfile
✔	8XQP	38584	2024-08-03	2024-01-05	3.29	2.28	3.48	2.1	0.004	0.71	1.0	0.05	16.65	0.01	2.173	14.37	0.30	3.7	96.3	0.0	0.47	0.71	0.72	2.30	2.1	0.004	0.67	0.0	0.04	17.10	0.00	2.522	11.98	5.28	3.7	96.3	0.0	0.71	0.37	0.71	0.72	1.78	8987	1136	6	0	2	0	0	logfile
✔	8XQR	38586	2024-08-03	2024-01-05	3.2	2.41	3.31	2.1	0.004	0.64	0.0	0.04	15.58	0.00	2.104	13.49	0.00	3.1	96.9	0.0	1.04	0.73	0.76	2.10	2.1	0.003	0.60	0.0	0.04	16.01	0.00	2.532	10.35	5.10	2.8	97.1	0.1	1.08	1.10	0.72	0.75	1.90	8273	1046	6	0	1	0	0	logfile
✔	8VJ6	43275	2024-08-09	2024-01-05	3.5	3.70	3.56	3.6	0.008	0.73	0.0	0.05	12.95	0.00	2.113	6.40	0.00	3.6	96.2	0.2	0.46	0.58	0.72	2.37	3.6	0.004	0.68	0.0	0.04	15.80	0.00	2.392	9.47	1.84	5.0	94.9	0.1	0.53	2.12	0.60	0.78	1.71	25176	3186	6	0	4	0	0	logfile
✔	8XQN	38582	2024-08-03	2024-01-05	3.05	2.30	3.12	2.0	0.004	0.62	0.0	0.04	15.73	0.00	2.075	14.89	0.00	3.6	96.4	0.0	1.02	0.76	0.77	2.27	2.1	0.003	0.61	0.0	0.04	16.14	0.00	2.512	9.76	4.38	3.1	96.9	0.0	0.91	0.32	0.76	0.78	2.20	8976	1135	6	0	2	0	0	logfile
✔	8XQo	38583	2024-08-03	2024-01-05	2.77	2.28	2.96	2.0	0.003	0.57	0.0	0.04	15.54	0.00	1.853	11.79	0.10	3.0	97.0	0.0	1.14	0.78	0.80	3.08	2.0	0.005	0.61	0.0	0.04	16.08	0.00	2.528	8.94	3.58	3.1	96.9	0.0	0.84	0.30	0.79	0.80	2.96	8958	1132	6	0	2	0	0	logfile
✔	8XQ4	38565	2024-08-03	2024-01-04	3.21	2.33	3.21	3.1	0.003	0.74	0.0	0.05	12.52	0.01	2.267	3.69	3.90	4.0	96.0	0.0	-1.41	0.70	0.77	1.54	3.0	0.004	0.67	0.0	0.04	16.05	0.00	2.456	7.68	2.90	4.4	95.6	0.0	1.34	1.64	0.71	0.78	1.65	8237	1044	1	0	0	0	0	logfile
✔	8XQ8	38569	2024-08-03	2024-01-04	3.35	2.39	3.39	2.0	0.007	1.24	0.0	0.06	17.54	0.01	2.255	7.43	0.77	2.7	97.3	0.0	-1.52	0.68	0.76	1.59	2.8	0.004	0.69	0.0	0.04	17.84	0.00	2.473	11.62	4.42	3.3	96.7	0.0	1.51	1.62	0.69	0.78	1.43	8319	1051	2	0	1	0	0	logfile
✔	8XQA	38571	2024-08-04	2024-01-04	3.54	2.60	3.54	2.0	0.005	0.76	0.0	0.05	15.00	0.01	2.268	5.07	6.62	2.0	98.0	0.0	-1.20	0.73	0.75	1.12	2.9	0.004	0.68	0.0	0.04	16.97	0.00	2.494	11.80	5.92	2.5	97.5	0.0	2.34	0.49	0.73	0.75	0.95	10602	1356	2	0	0	0	0	logfile
✔	8XPQ	38559	2024-08-06	2024-01-04	3.1	2.45	3.09	3.0	0.006	0.80	2.0	0.05	13.26	0.01	2.286	4.94	5.24	4.0	95.9	0.1	-1.76	0.74	0.74	1.35	2.9	0.003	0.67	0.0	0.04	16.67	0.00	2.506	9.21	4.89	4.5	95.5	0.0	1.79	0.85	0.78	0.80	1.13	15966	2078	2	0	0	0	0	logfile
✔	8XQ7	38568	2024-08-06	2024-01-04	3.15	2.43	3.19	3.1	0.005	0.79	0.0	0.05	13.36	0.01	2.261	5.76	5.64	4.2	95.8	0.0	-1.41	0.78	0.80	1.57	2.8	0.003	0.70	0.0	0.04	16.27	0.00	2.397	11.53	3.96	4.6	95.4	0.0	1.50	0.68	0.79	0.80	1.39	16430	2082	4	0	2	0	0	logfile
✔	8ViF	43260	2024-08-02	2024-01-04	3.1	3.32	3.03	3.3	0.004	0.61	0.0	0.04	13.83	0.01	2.184	5.82	0.00	3.1	96.9	0.0	0.05	0.70	0.84	3.63	3.3	0.003	0.56	0.0	0.04	14.87	0.00	2.541	5.98	1.90	3.1	96.9	0.0	-0.34	0.99	0.69	0.85	3.34	3326	427	4	0	1	0	0	logfile
✔	8Vi2	43246	2024-08-03	2024-01-03	3.1	3.54	3.18	3.5	0.003	0.48	0.0	0.04	12.42	0.00	2.029	6.59	0.00	3.7	96.3	0.0	0.67	0.62	0.86	5.04	3.5	0.004	0.55	0.0	0.04	13.71	0.00	2.609	4.64	0.52	2.8	97.2	0.0	3.30	0.65	0.59	0.87	4.43	7382	924	3	0	0	0	0	logfile
✔	8Vi3	43247	2024-08-03	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.003	0.48	0.0	0.04	14.76	0.00	2.440	3.78	1.17	1.9	98.1	0.0	2.19	0.33	0.61	0.89	4.54	7359	924	3	0	0	0	0	logfile
✔	8Vi4	43248	2024-08-03	2024-01-03	3.1	3.45	3.13	3.4	0.003	0.46	0.0	0.04	12.37	0.00	2.132	4.99	0.13	1.7	98.3	0.0	2.48	0.70	0.88	4.44	3.4	0.003	0.47	0.0	0.04	13.67	0.00	2.634	3.17	1.04	2.0	98.0	0.0	3.07	0.30	0.65	0.89	3.64	7359	924	3	0	0	0	0	logfile
✔	8Vi5	43249	2024-08-03	2024-01-03	3.2	3.48	3.25	3.5	0.003	0.49	0.0	0.04	12.93	0.00	1.764	4.66	0.00	1.5	98.5	0.0	2.79	0.63	0.85	3.44	3.5	0.003	0.53	0.0	0.04	14.04	0.00	2.663	5.46	0.52	2.2	97.8	0.0	2.55	0.87	0.59	0.85	3.06	7359	924	3	0	0	0	0	logfile
✔	8ViB	43256	2024-08-02	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.004	0.79	0.0	0.04	5.91	0.00	2.425	9.23	0.00	11.5	88.1	0.5	-1.43	2.86	0.49	0.83	—	4421	888	6	0	7	0	0	logfile

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